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Full-Text Articles in Medicine and Health Sciences

Expanding Inducible Epithelial Resistance Against Pneumonia: Novel Virus, Novel Receptor, Michael Longmire May 2025

Expanding Inducible Epithelial Resistance Against Pneumonia: Novel Virus, Novel Receptor, Michael Longmire

Dissertations and Theses (Open Access)

Pneumonia is the leading infectious cause of death worldwide and presents a continuing risk among immunocompromised patients. Our work has been focused for many years on the phenomenon of inducible epithelial resistance, where activation of the innate immune response in the airway epithelium is necessary and sufficient to produce a pathogen-killing but self-protective environment to prevent severe disease. Inducible resistance is pathogen-agnostic and has been demonstrated against an array of respiratory infections. We achieve this using a combination of pattern recognition receptor agonists – Pam2CSK4 and ODN M362 being the current formulation – which produce synergistic levels of pathogen reduction …


Healthy Sendoffs: The Long-Term Mental Health Effects On Nicu Parents And How Nurses Can Improve Outcomes, Christine Lyford May 2025

Healthy Sendoffs: The Long-Term Mental Health Effects On Nicu Parents And How Nurses Can Improve Outcomes, Christine Lyford

Senior Honors Theses

Parents who enter the neonatal intensive care unit (NICU) undergo numerous stressors on their psychological wellbeing that can leave them with impacts long after discharge. This review was conducted to analyze the severity of long-term mental health deficits in parents and compare various nursing interventions that could decrease the incidence of these deficits. Seven databases were searched within the past seven years and documented in the PRISMA flow chart with twelve articles being identified as meeting the inclusion requirements. These articles found a higher prevalence of adverse mental health outcomes in NICU parents, with a focus on family centered care …


Professional Quality Of Life Among Emergency Department Clinicians And Impact Of Trauma Informed Care Training: A Before-And-After Cohort Study, Savannah F. Steinhauser, Rachel Haroz, Iris Jones, Christopher W. Jones, William Skelton, Stephen Trzeciak, Brian Roberts May 2025

Professional Quality Of Life Among Emergency Department Clinicians And Impact Of Trauma Informed Care Training: A Before-And-After Cohort Study, Savannah F. Steinhauser, Rachel Haroz, Iris Jones, Christopher W. Jones, William Skelton, Stephen Trzeciak, Brian Roberts

Cooper Rowan Medical Journal

Objectives: Trauma exposures and high rates of burnout are widespread among emergency department (ED) clinicians and patients. Trauma-informed care (TIC) education promotes resilience for patients and clinicians. However, there remains a scarcity of data on the impact of TIC on ED clinician outcomes. The objectives of this study were to evaluate post-COVID-19 pandemic professional quality of life among ED clinicians and to test if participation in a TIC education initiative among ED clinicians (1) improves professional quality of life and (2) decreases bias toward patients who misuse opioids.

Methods: This was a single center, prospective, parallel before-and-after pilot study conducted …


Replication Of “Assessing The Student Nurses’ Knowledge Of Oral Health Care”, Heaven Mcnalty May 2025

Replication Of “Assessing The Student Nurses’ Knowledge Of Oral Health Care”, Heaven Mcnalty

Honors Theses

Oral health is an important part of overall health and well-being. In nursing care, maintaining good oral hygiene helps prevent infections, improves comfort, and supports nutrition especially in patients who are extremely sick, elderly, or unable to care for themselves. Nurses play a key role in assessing and promoting oral health as part of the daily care that they provide to patients. Even though oral health is important, it is often not emphasized enough in nursing education. Many nursing students may not get enough training or experience in this area, which can lead to gaps in their knowledge and confidence …


Cord Blood Treatment For Children With Cerebral Palsy: Individual Participant Data Meta-Analysis, Megan Finch-Edmondson, Madison C B Paton, Annabel Webb, Mahmoud Reza Ashrafi, Remy K Blatch-Williams, Charles S Cox, Kylie Crompton, Alexandra R Griffin, Minyoung Kim, Steven Kosmach, Joanne Kurtzberg, Masoumeh Nouri, Mi Ri Suh, Jessica Sun, Morteza Zarrabi, Iona Novak May 2025

Cord Blood Treatment For Children With Cerebral Palsy: Individual Participant Data Meta-Analysis, Megan Finch-Edmondson, Madison C B Paton, Annabel Webb, Mahmoud Reza Ashrafi, Remy K Blatch-Williams, Charles S Cox, Kylie Crompton, Alexandra R Griffin, Minyoung Kim, Steven Kosmach, Joanne Kurtzberg, Masoumeh Nouri, Mi Ri Suh, Jessica Sun, Morteza Zarrabi, Iona Novak

The Brown Foundation: Institute of Molecular Medicine

Context: Umbilical cord blood (UCB) is a novel treatment for cerebral palsy (CP), with trials indicating UCB can improve gross motor function. However, heterogeneity has limited the ability to interpret findings.

Objective: Assess the safety and efficacy of UCB for improving gross motor function in children with CP, including exploring cell dose effect and responder subgroups.

Data sources: Individual participant data from published reports and registered trials identified via systematic searches.

Study selection: Studies administering UCB to individuals with CP collecting Gross Motor Function Measure (GMFM) scores.

Data extraction: A 1-stage individual participant data meta-analysis was conducted in R to …


Joint Modelling Of Longitudinal Egfr Trajectory And Time To Acute Kidney Injury In Lung Transplant Patients, Samiha Zakir May 2025

Joint Modelling Of Longitudinal Egfr Trajectory And Time To Acute Kidney Injury In Lung Transplant Patients, Samiha Zakir

Theses and Dissertations

Progressive declines in estimated glomerular filtration rate (eGFR) often precede acute kidney injury (AKI), yet the relationship between eGFR trends and AKI risk remains unclear. This study investigates longitudinal eGFR changes and their association with AKI in 459 lung transplant patients followed for up to 7 years (n = 6419). We applied a piecewise linear mixed-effects model to evaluate eGFR trajectories and a Cox proportional hazards model to assess time to AKI. A joint model was used to explore the interplay between longitudinal and survival processes. Key covariates included gender, age at transplantation, antibody-mediated rejection (AMR), and pre-transplant eGFR. Males …


Novel Application Of Orthopedic Suture Tape For Sternal Closure After Upper Hemisternotomy, Vishal N. Shah, Joshua R. Chen, Konstadinos A. Plestis May 2025

Novel Application Of Orthopedic Suture Tape For Sternal Closure After Upper Hemisternotomy, Vishal N. Shah, Joshua R. Chen, Konstadinos A. Plestis

Department of Surgery Faculty Papers

The FiberTape (FT) System (Arthrex, Naples, FL, USA), initially developed for orthopedic surgery, is a new, nonmetallic, suture-based alternative to standard stainless-steel wires for sternal reapproximation. Publications on FT use after cardiothoracic surgery are limited. The FT System has not been used in upper hemisternotomy (UHS) closure. Consequently, we report the use of the FT System for sternal closure in a 70-year-old man after UHS aortic valve replacement and discuss several advantages of its application.


Targeting Bard1 Suppresses A Myc-Dependent Transcriptional Program And Tumor Growth In Pancreatic Ductal Adenocarcinoma, Sohum Patel, Eleanor Jenkins, Rutuj P. Kusurkar, Sherry Lee, Wei Jiang, Avinoam Nevler, Matthew Mccoy, Michael J. Pishvaian, Rosalie C. Sears, Jonathan R. Brody, Charles J. Yeo, Aditi Jain May 2025

Targeting Bard1 Suppresses A Myc-Dependent Transcriptional Program And Tumor Growth In Pancreatic Ductal Adenocarcinoma, Sohum Patel, Eleanor Jenkins, Rutuj P. Kusurkar, Sherry Lee, Wei Jiang, Avinoam Nevler, Matthew Mccoy, Michael J. Pishvaian, Rosalie C. Sears, Jonathan R. Brody, Charles J. Yeo, Aditi Jain

Department of Surgery Faculty Papers

Pancreatic ductal adenocarcinoma (PDAC) remains one of the deadliest cancers demanding better and more effective therapies. BARD1 or BRCA1-Associated -Ring Domain-1 plays a pivotal role in homologous recombination repair (HRR). However, its function and the underlying molecular mechanisms in PDAC are still not fully elucidated. Here, we demonstrate that BARD1 is overexpressed in PDAC and its genetic inhibition suppresses c-Myc and disrupts c-Myc dependent transcriptional program. Mechanistically, BARD1 stabilizes c-Myc through ubiquitin-proteasome system by regulating FBXW7. Importantly, targeting BARD1 using either siRNAs or CRISPR/Cas9 deletion blocks PDAC growth in vitro and in vivo, without any signs of toxicity to mice. …


Labour Companionship And Respectful Treatment Of Women During Childbirth: A Cross-Sectional Study Across 16 Hospitals In Benin, Malawi, Tanzania And Uganda, Soha El-Halabi, Kristi Sidney Annerstedt, Christian Agossou, Fadhlun Al-Beity, Andrea B. Pembe, Phillip Wanduru, Bianca Kandeya, Jean-Paul Dossou, Helle Molsted-Alvesson, Claudia Hanson May 2025

Labour Companionship And Respectful Treatment Of Women During Childbirth: A Cross-Sectional Study Across 16 Hospitals In Benin, Malawi, Tanzania And Uganda, Soha El-Halabi, Kristi Sidney Annerstedt, Christian Agossou, Fadhlun Al-Beity, Andrea B. Pembe, Phillip Wanduru, Bianca Kandeya, Jean-Paul Dossou, Helle Molsted-Alvesson, Claudia Hanson

Centre of Excellence in Women and Child Health

Introduction: Evidence suggests that women value and benefit from having a labour companion during childbirth. However, the applicability of the evidence to low-income and lower-middle-income countries is limited and varies. Thus, we assessed the association between the presence of labour companions and mistreatment in 16 hospitals of Benin, Malawi, Tanzania and Uganda.

Methods: We conducted a cross-sectional survey using a validated questionnaire administered to women at discharge after birth between December 2021 and March 2024. The main outcomes were factor-weighted respectful treatment score and its subscores on maintained respect and dignity, privacy and maintained confidentiality and no physical and verbal …


Comparison Of Physical Characteristics Among English Professional And Semi-Professional Soccer Players Across Different Leagues, Nicholas Joel Ripley, Jack Fahey, Paul Jones, Jake Batsford, Paul Sindall, Christopher Bramah, Paul Comfort May 2025

Comparison Of Physical Characteristics Among English Professional And Semi-Professional Soccer Players Across Different Leagues, Nicholas Joel Ripley, Jack Fahey, Paul Jones, Jake Batsford, Paul Sindall, Christopher Bramah, Paul Comfort

Research outputs 2022 to 2026

The purpose of the present study was to investigate if differences exist in neuromuscular qualities between different leagues in English male soccer. Twenty soccer players (age: 23.3±5.2 years, stature: 180.3±7.0cm, mass: 82.5±7.7kg) from English football league two (EFL2). 34 soccer players (age: 25.8±4.3 years, stature: 180.9±5.6cm, mass: 81.4±8.6kg) from National league (NL) and 23 soccer players (age: 27.5±4.3 years, stature: 182.1±5.5cm, mass: 84.1±8.0kg) from National league North (NLN). Each player completed three to five repetitions of the countermovement jump (CMJ), countermovement rebound jump (CMJRJ) and isometric mid-thigh pull (IMTP). Trivial to small differences were observed in CMJ jump height, CMJ …


The Barefoot Lifestyle: Bringing Nature Back Into Health, Rachel Murray May 2025

The Barefoot Lifestyle: Bringing Nature Back Into Health, Rachel Murray

Senior Honors Theses

The Barefoot lifestyle has many research questions revolving around the topic. Throughout the introduction, new solutions, such as natural way, will be spoken about broadly. The questions asked are to figure out why going barefoot has so many benefits physically, mentally, emotionally, and spiritually while introducing examples and other supportive studies and or cases. Additionally, the purpose of this research is to find a way back to a natural way of healing with specific examples of barefoot scenarios, trials of barefoot running and walking, and specific techniques to enhance the effects.


Highly Pathogenic Avian Influenza Outbreak Preparedness In The United States: A Scoping Review, Emma J. Gurley May 2025

Highly Pathogenic Avian Influenza Outbreak Preparedness In The United States: A Scoping Review, Emma J. Gurley

Honors Theses

In order to gauge preparedness for an outbreak of highly pathogenic avian influenza (H5N1) in the United States, a scoping review of the current literature was conducted. This process involved (1) identifying the research question, (2) identifying studies relevant to the topic, (3) selecting studies for inclusion (4) charting the data, and (5) analyzing and reporting the final data. Ultimately, seventeen studies were deemed appropriate for examination within this scoping review and several key themes were identified. The results emphasize the importance of adopting a One Health approach, the key role that vaccination may well play in preventing the spread …


05-20-25 Bor Hsc Committee Meeting Minutes, Patricia Serna May 2025

05-20-25 Bor Hsc Committee Meeting Minutes, Patricia Serna

HSC Committee (A subcommittee of the UNM Board of Regents)

05-20-25 BOR HSC Committee Meeting Minutes


Bibliography For "Mindfulness Reference Display", Isabella Piechota, Arianna Tillman, Annikah Carpio May 2025

Bibliography For "Mindfulness Reference Display", Isabella Piechota, Arianna Tillman, Annikah Carpio

Library Displays and Bibliographies

A bibliography created to support a display about mindfulness in May 2025 at the Leatherby Libraries at Chapman University.


Kansas City, Kansas, Vida Davidović May 2025

Kansas City, Kansas, Vida Davidović

Department of English: Dissertations, Theses, and Student Research

KANSAS CITY, KANSAS is a thesis that operates in the tradition of expressionist dramaturgy and playwriting, taking up themes of abuse, imperialism, war, trauma, womanhood, Balkan identities, history of the Balkans, as well as the discourses of psychoanalysis and postcolonial theory. The use of different theoretical frameworks related to both international and personal politics, which are shown to be intertwined, suggests a strong relationship between political processes in the Second World Countries that had experienced many occupations throughout their history and the way women in those countries relate to the questions of body, authority, feminity, and interpersonal relationships. The play …


Dr. Doctor: A Look At Life In Medicine, Alexandra Hausmann May 2025

Dr. Doctor: A Look At Life In Medicine, Alexandra Hausmann

Honors Program: Senior Projects (Public)

The life of a medical professional is not easy. The road to get there and the lifestyle when practicing is mentally draining and results in many physicians experiencing burnout. This project and paper explore the stigma surrounding mental health in medicine, examining how fear of professional repercussions prevents many physicians from getting help. Through research and interviews with medical professionals of various specialties, this project looks at the different mental health struggles that each specialty faces. Additionally due to increased social media, medicine continues to evolve at a fast rate. Looking forward, medical professionals will have to deal with increased …


Strategies For Reducing Racial Disparities In Maternal Health Outcomes: An Examination Of The Role Of Doulas, Samavi Rafique May 2025

Strategies For Reducing Racial Disparities In Maternal Health Outcomes: An Examination Of The Role Of Doulas, Samavi Rafique

Honors Program: Senior Projects (Public)

Comparatively high rates of maternal morbidity and mortality remain a significant concern in the United States, particularly for Black women, who face a risk of maternal mortality that is four times higher than that of white women. Realizing the historical context of this burden requires tracing American obstetric and gynecological medicine to its 19th-century roots, where the medical experimentation of enslaved Black women occurred largely unopposed by the voices of those in power. The legacy of this is embodied in the modern maternal health crisis, marked by stark racial disparities in maternal health outcomes. As non-clinically trained professionals whose supportive …


Environmental Effects On Preweaning Calf Health, Lindsay L. Waechter-Mead May 2025

Environmental Effects On Preweaning Calf Health, Lindsay L. Waechter-Mead

School of Veterinary and Biomedical Sciences: Dissertations, Theses, and Student Research

Neonatal calf health is an important factor in the productivity and profitability in the beef cattle industry, influencing preweaning survival, growth, and long-term performance. The overall objective of this thesis is to characterize risk factors that contribute to health issues in young beef calves. The first objective is to review literature exploring the environmental factors affecting preweaning morbidity and mortality, including hypothermia, precipitation, and wind. Management strategies such as the effect of environmental conditions of calving location, body condition score in dams at parturition, and the impacts of dystocia on calf health will also be discussed. Gaps in current research …


“Re-Storying” Anne Shirley And The Adhd Child: A Crip Genealogy Of Anne Of Green Gables, Darian Aleyna Wilson May 2025

“Re-Storying” Anne Shirley And The Adhd Child: A Crip Genealogy Of Anne Of Green Gables, Darian Aleyna Wilson

Department of English: Dissertations, Theses, and Student Research

This thesis explores the contested nature of Attention Deficit Hyperactivity Disorder (ADHD), focusing on its cultural and historical constructions. While ADHD has been included in the Diagnostic and Statistical Manual of Mental Disorders since 1980, its legitimacy remains a subject of debate across medical, disability studies, and historical scholarship. Using Eli Clare’s critique of diagnosis as a tool rather than a fact, this project examines how ADHD is both pathologized and re-storied within societal and medical discourses. It highlights the tension between medical classifications and lived experiences of those diagnosed with ADHD, particularly in the context of girlhood.

The central …


Association Of Nucleoside Reverse Transcriptase Inhibitor Use With Reduced Risk Of Alzheimer's Disease Risk, Joseph Magagnoli Ph.D., Ms, Meenakshi Ambati, Tammy H. Cummings, Joseph Nguyen, Claire C. Thomas, Vidya L. Ambati, S. Scott Sutton, Bradley D. Gelfand, Jayakrishna Ambati May 2025

Association Of Nucleoside Reverse Transcriptase Inhibitor Use With Reduced Risk Of Alzheimer's Disease Risk, Joseph Magagnoli Ph.D., Ms, Meenakshi Ambati, Tammy H. Cummings, Joseph Nguyen, Claire C. Thomas, Vidya L. Ambati, S. Scott Sutton, Bradley D. Gelfand, Jayakrishna Ambati

Faculty Publications

INTRODUCTION

Inflammasome activation is implicated in Alzheimer's disease (AD). We previously demonstrated that nucleoside reverse transcriptase inhibitors (NRTIs), drugs approved to treat human immunodeficiency virus (HIV) and hepatitis B, also inhibit inflammasome activation.

METHODS

We evaluated the association between NRTI exposure and subsequent development of AD in the United States Veterans Health Administration over a 24-year period and in the MarketScan database over a 14-year period using propensity score-matched multivariate Cox hazards regression and Kaplan–Meier analyses.

RESULTS

We report that in humans, NRTI exposure was associated with a significantly lower incidence of AD in two of the largest health insurance …


Glim Consensus Approach To Diagnosis Of Malnutrition: A 5-Year Update., Gordon L Jensen, Tommy Cederholm, M Isabel T D Correia, M Cristina Gonzalez, Ryoji Fukushima, Veeradej Pisprasert, Renee Blaauw, Diana Cardenas Braz, Fernando Carrasco, Alfonso J Cruz Jentoft, Cristina Cuerda, David C Evans, Vanessa Fuchs-Tarlovsky, Leah Gramlich, Han Ping Shi, Jeanette M Hasse, Michael Hiesmayr, Naoki Hiki, Harriët Jager-Wittenaar, Shukri Jahit, Anayanet Jáquez, Heather Keller, Stanislaw Klek, Ainsley Malone, Kris M Mogensen, Naoharu Mori, Manpreet Mundi, Maurizio Muscaritoli, Doris Ng, Ibolya Nyulasi, Matthias Pirlich, Stephane Schneider, Marian De Van Der Schueren, Soranit Siltharm, Pierre Singer, Alison Steiber, Kelly A Tappenden, Jianchun Yu, André Van Gossum, Jaw-Yuan Wang, Marion F Winkler, Charlene Compher, Rocco Barazzoni May 2025

Glim Consensus Approach To Diagnosis Of Malnutrition: A 5-Year Update., Gordon L Jensen, Tommy Cederholm, M Isabel T D Correia, M Cristina Gonzalez, Ryoji Fukushima, Veeradej Pisprasert, Renee Blaauw, Diana Cardenas Braz, Fernando Carrasco, Alfonso J Cruz Jentoft, Cristina Cuerda, David C Evans, Vanessa Fuchs-Tarlovsky, Leah Gramlich, Han Ping Shi, Jeanette M Hasse, Michael Hiesmayr, Naoki Hiki, Harriët Jager-Wittenaar, Shukri Jahit, Anayanet Jáquez, Heather Keller, Stanislaw Klek, Ainsley Malone, Kris M Mogensen, Naoharu Mori, Manpreet Mundi, Maurizio Muscaritoli, Doris Ng, Ibolya Nyulasi, Matthias Pirlich, Stephane Schneider, Marian De Van Der Schueren, Soranit Siltharm, Pierre Singer, Alison Steiber, Kelly A Tappenden, Jianchun Yu, André Van Gossum, Jaw-Yuan Wang, Marion F Winkler, Charlene Compher, Rocco Barazzoni

Ambulatory and Primary Care Articles

BACKGROUND: The Global Leadership Initiative on Malnutrition (GLIM) introduced an approach for malnutrition diagnosis in 2019 that comprised screening followed by assessment of three phenotypic criteria (weight loss, low body mass index [BMI], and low muscle mass) and two etiologic criteria (reduced food intake/assimilation and inflammation/disease burden). This planned update reconsiders the GLIM framework based on published knowledge and experience over the past 5 years.

METHODS: A working group (n = 43 members) conducted a literature search spanning 2019-2024 using the keywords "Global Leadership Initiative on Malnutrition or GLIM." Prior GLIM guidance activities for using the criteria on muscle mass …


Measuring The Strategies To Cope With Shift Work Among Healthcare Workers, Khushi Mehta, Lindsay Ham May 2025

Measuring The Strategies To Cope With Shift Work Among Healthcare Workers, Khushi Mehta, Lindsay Ham

Psychological Science Undergraduate Honors Theses

It is known that lack of sleep, no matter what career a person is in, is detrimental to the overall longevity and health of an individual. Balance of sleep can be easy to attain, especially if one’s work life is able to facilitate it. Healthcare workers, however, often do not have that luxury. Healthcare professionals work a variety of shifts ranging from night shifts, 12-16-hour shifts, regular daytime hours, and being on call during the night. These irregular working schedules can have a detrimental effect on their sleep quality and quantity. If healthcare workers don’t get enough sleep, it can …


Efficacy Of Manuka Honey Oral Rinsein Treatment Of Xerostomia Among Elderlypatients: A Randomized Controlled Trial, Dalia Ghalwash, Asmaa Abou-Bakr, Ayman Elgawish May 2025

Efficacy Of Manuka Honey Oral Rinsein Treatment Of Xerostomia Among Elderlypatients: A Randomized Controlled Trial, Dalia Ghalwash, Asmaa Abou-Bakr, Ayman Elgawish

Dentistry

Background Xerostomia is a common complaint among elderly patients. Due to the anti-inflammatory effect, Manuka honey could be a promising alternative remedy for many medical conditions, including xerostomia. The present study aimed to evaluate the effectiveness of Manuka honey oral rinse as a novel management for xerostomiain elderly patients. Methods This study was designed as a randomized, single-blinded clinical trial. 42 elderly patients who were allevaluated for the presence of xerostomia and hyposalivation were randomly allocated into 3 equal groups. The interventions were used 3 times per day for 1 month as follows: Manuka honey oral rinse in group I, …


Evaluation Of Marginal And Internal Fit In Cad/Cam-Fabricated Indirect Restorations, Sara Adel Botros, Mohamed Samy Salama, Hend Sayed Ahmed, Ayman Helmy May 2025

Evaluation Of Marginal And Internal Fit In Cad/Cam-Fabricated Indirect Restorations, Sara Adel Botros, Mohamed Samy Salama, Hend Sayed Ahmed, Ayman Helmy

Dentistry

No abstract provided.


Heterotopias Of Confinement: Zoo Architecture And The Loss Of Elephant Agency, Clayton Gill Beasley May 2025

Heterotopias Of Confinement: Zoo Architecture And The Loss Of Elephant Agency, Clayton Gill Beasley

Electronic Theses and Dissertations

Zoos functions as a site where human-animal relationships are structured through built environments that mediate control and representation. This study examines zoos as heterotopias—spaces where power and surveillance are negotiated between human observers and captive nonhuman animals. While zoos are often framed as spaces of conservation and education, their architectural design reinforces hierarchies of observation and confinement, shaping both human perceptions of nature and the lived experiences of nonhuman animals. This research focuses on Asian elephants as a critical species within this framework, exploring how their captivity illuminates tensions between human-imposed structures and nonhuman autonomy. Drawing from theories of heterotopia, …


Kinasefusiondb: An Integrative Knowledge Of Kinase Fusion Proteins In Multi-Scales, Himansu Kumar, Zikang Chen, Abayomi Adegunlehin, Loren Trowbridge, Leonardo Aguilar, Pora Kim May 2025

Kinasefusiondb: An Integrative Knowledge Of Kinase Fusion Proteins In Multi-Scales, Himansu Kumar, Zikang Chen, Abayomi Adegunlehin, Loren Trowbridge, Leonardo Aguilar, Pora Kim

Faculty, Staff and Student Publications

Kinase fusion genes were the most targeted fusion gene group among multiple major cellular gene groups. Kinase inhibitors disrupt aberrant signaling cascades and inhibit tumor progression, yet the specific mechanisms of action of the U.S. Food and Drug Administration (FDA)-approved inhibitors in the context of kinase fusion oncoproteins remain largely unknown. This gap limits our ability to develop personalized therapies and next-generation kinase inhibitors. To address this, we developed a novel in silico pipeline for predicting 3D structures of kinase fusion proteins and performing structure-based virtual screening. This approach enables large-scale structural annotation and drug screening across pan-cancer kinase fusions. …


Cafe: Improved Federated Data Imputation By Leveraging Missing Data Heterogeneity, Sitao Min, Hafiz Asif, Xinyue Wang, Jaideep Vaidya May 2025

Cafe: Improved Federated Data Imputation By Leveraging Missing Data Heterogeneity, Sitao Min, Hafiz Asif, Xinyue Wang, Jaideep Vaidya

Faculty, Staff and Student Publications

Federated learning (FL), a decentralized machine learning approach, offers great performance while alleviating autonomy and confidentiality concerns. Despite FL's popularity, how to deal with missing values in a federated manner is not well understood. In this work, we initiate a study of federated imputation of missing values, particularly in complex scenarios, where missing data heterogeneity exists and the state-of-the-art (SOTA) approaches for federated imputation suffer from significant loss in imputation quality. We propose Cafe, a personalized FL approach for missing data imputation. Cafe is inspired from the observation that heterogeneity can induce differences in observable and missing data distribution across …


Implications Of Type Iv Pilus Retraction For Dna Uptake By Acinetobacter Baumannii, Yafan Yu May 2025

Implications Of Type Iv Pilus Retraction For Dna Uptake By Acinetobacter Baumannii, Yafan Yu

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Horizontal gene transfer (HGT) via natural competence allows bacteria to incorporate extracellular DNA (eDNA) into their genomes, facilitating genetic diversity and adaptation. In Acinetobacter species, natural competence depends on DNA binding and uptake mediated by type IV pili (T4P). T4P are dynamic extracellular filaments composed primarily of the major pilin subunit PilA, along with a few minor subunits. T4P drive a range of cellular functions including twitching motility, biofilm formation, and DNA uptake, with some functions dependent on pilus retraction and others not. However, how Acinetobacter T4P bind DNA and how T4P/eDNA interactions impact biofilm formation remain unclear. Here, I …


Crisis Response Hospital Physical Layout Considerations During Covid-19: A Framework For Surge Preparedness, Future Investigations, And Analysis, Golnoosh Abdolahzadeh May 2025

Crisis Response Hospital Physical Layout Considerations During Covid-19: A Framework For Surge Preparedness, Future Investigations, And Analysis, Golnoosh Abdolahzadeh

Durham School of Architectural Engineering and Construction: Dissertations, Theses, and Student Research

This thesis investigates the intersection of hospital design and operational performance during health emergencies, explicitly focusing on layout modifications in emergency departments. The study is structured around four key components. First, it explores hospitals' significant challenges during the COVID-19 pandemic through data collected from interviews with Nebraska hospital leaders. Second, the research introduces a surge-based conceptual framework to guide hospital responses during crisis events. Developed from empirical data, the framework highlights the importance of flexible spatial planning and information-driven decision-making. Third, the study focuses on hospital physical layout considerations, identifying features that either supported or hindered Nebraska hospital operations during …


Epidemiological Inferences Of The Impacts Of Winter Ticks On Moose Health, Krishna S. Woerheide May 2025

Epidemiological Inferences Of The Impacts Of Winter Ticks On Moose Health, Krishna S. Woerheide

Department of Entomology: Dissertations, Theses, and Student Research

The North American Moose (mooz in Anishinaabemowin, Ojibwe language, Alces alces), a culturally significant subsistence species for the Anishinaabe people, faces population decline due to calf predation, pathogen transmission, and parasitism by the winter tick (Dermacentor albipictus), all exacerbated by climate change. This study explores the impact of winter tick infestations on moose health, with a focus on natural mineral seeps as potential transmission hotspots in moose habitats within the Grand Portage Indian Reservation (Gichi Onigaming), on Isle Royale National Park (Minong), and within the 1854 Ceded Territory (greater northeastern Minnesota) - ancestral and present homelands of …