Physical Sciences and Mathematics Commons^™

Cross-Protection Against Als-Inhibiting Herbicides In Non-Transgenic Switchgrass Selected For Imazapic Resistance, C. M. Adams, J. I. Morrison, B. S. Baldwin

IGC Proceedings (1977-2023)

Switchgrass (Panicum virgatum L.) is a North American native warm-season perennial grass that is a cornerstone species in conservation systems and can also be utilized as a high-quality forage. ‘Tusca’ is a cultivar of lowland switchgrass selected from ‘Alamo’ (USDA NRCS, Knox City, TX) for resistance to the herbicide imazapic. This study was conducted to determine if selection in Tusca conferred cross-protection to other ALS-inhibiting herbicides. Five ALS-inhibiting herbicides, including imazapic (IPIC), imazamox (IMOX), imazapyr (IPYR), imazethapyr (ITHR), and metsulfuron methyl (MSUL), were tested on Tusca, Alamo, and wildtype johnsongrass (Sorghum halepense L. (Pers.)) at five rates (25, …

Comparison Of Causality Of Temperature And Precipitation On Italian Ryegrass (Lolium Multifloru Lam.) Yield Between Cultivation Fields Via Multi-Group Structural Equation Model Analysis In The Republic Of Korea, M. Kim, J. Y. Kim, M. H. Jo, C. H. Kim, K. Sung

IGC Proceedings (1977-2023)

This study aimed to compare the causality of climatic factors affecting the yield of Italian ryegrass (IRG) between upland fields and paddy fields, by multi-group structure equation modeling. The raw data (n = 728) on forage contains both yield, field type, and the plantation address were collected from the Rural Development Administration, Republic of Korea. The climatic factors were: growing days, temperature and precipitation - in autumn and next spring seasons - from the climate big data of the weather information system of Korean Meteorology Administration. In the result, the composition of climatic factors was similar, but the causality by …

Geospatial Applications Of Cave Resource Data To Better Understand Epikarst And Unsaturated Zone Groundwater Flow Path Development, Sierra M. Heimel, Benjamin W. Tobin

Faculty, Staff, and Affiliated Publications--KGS

The unsaturated zone is a critical component of karstic groundwater systems and is shown to provide substantial storage capacities. Understanding the spatial patterns and controls on flow path activation is often a challenge. Previous research focused on remotely sensed data or inferential analyses to quantify these patterns. Here, we use two cave systems—one in Arizona, USA and a second in Kentucky, USA—to show the value of the cave survey and inventory data in the direct observation of speleogenesis and unsaturated zone processes. Using geospatial statistical analyses, we show that passage size varies with distance from some faults, indicating that these …

Graphs, Local Zeta Functions, Log-Coulomb Gases, And Phase Transitions At Finite Temperature, Wilson A. Zuniga-Galindo, Brian A. Zambrano-Luna, E. León-Cardenal

School of Mathematical & Statistical Sciences Faculty Publications

We study a log-gas on a network (a finite, simple graph) confined in a bounded subset of a local field (i.e., R, C, and Qp being the field of p-adic numbers). In this gas, a log-Coulomb interaction between two charged particles occurs only when the sites of the particles are connected by an edge of the network. The partition functions of such gases turn out to be a particular class of multivariate local zeta functions attached to the network and a positive test function, which is determined by the confining potential. The methods and results of the theory of local …

Effects Of Foliar Application Of Zno Nanoparticles On Lentil Production, Stress Level And Nutritional Seed Quality Under Field Conditions, Marek Kolenčík, Dávid Ernst, Matej Komár, Martin Urík, Martin Šebesta, Ľuba Ďurišová, Marek Bujdoš, Ivan Černý, Juraj Chlpík, Martin Juriga, Ramakanth Illa, Yu Qian, Huan Feng, Gabriela Kratošová, Karla Čech Barabaszová, Ladislav Ducsay, Elena Aydın

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Nanotechnology offers new opportunities for the development of novel materials and strategies that improve technology and industry. This applies especially to agriculture, and our previous field studies have indicated that zinc oxide nanoparticles provide promising nano-fertilizer dispersion in sustainable agriculture. However, little is known about the precise ZnO-NP effects on legumes. Herein, 1 mg·L⁻¹ ZnO-NP spray was dispersed on lentil plants to establish the direct NP effects on lentil production, seed nutritional quality, and stress response under field conditions. Although ZnO-NP exposure positively affected yield, thousand-seed weight and the number of pods per plant, there was no statistically significant …

Inverse Modeling Of Atmospheric Ch4 And Δ13C-Ch4 Measurements From Surface Observation Sites To Understand Trends In Global Methane Emissions Over More Than Three Decades, Sayantani Karmakar

Dissertations and Theses

Methane (CH₄) is the second most important greenhouse gas with a radiative forcing of 0.97 W/m² including both direct and indirect effects and a global warming potential of 28 over a 100-year time horizon. Unlike CO₂ whose rate of growth in the atmosphere has remained positive and increased in recent decades, the behavior of atmospheric methane is considerably more complex and is much less understood on account of the spatiotemporal variability of its emissions which include biogenic (e.g., wetlands, ruminants, rice agriculture), thermogenic (fossil fuels), and pyrogenic (i.e., biomass burning) sources. After sustained growth during most …

Me2b Alliance Validation Testing Report: Consumer Perception Of Legal Policies In Digital Technology, Noreen Y. Whysel, Karina Alexanyan, Shaun Spaulting, Julia Little

Publications and Research

Our relationship with technology involves legal agreements that we either review or enter into when using a technology, namely privacy policies and terms of service or terms of use (“TOS/TOU”). We initiated this research to understand if providing a formal rating of the legal policies (privacy policies and TOS/TOUs) would be valuable to consumers (or Me-s). From our early qualitative discussions, we noticed that people were unclear on whether these policies were legally binding contracts or not. Thus, a secondary objective emerged to quantitatively explore whether people knew who these policies protected (if anyone), and if the policies were perceived …

Changes In Crude Protein And Fiber Contents Of Small Grain Cereals For Forage Over Time, J. L. Zaragoza-Ramirez, N. Zayago-Ramos, P. A. Martinez-Hernandez

IGC Proceedings (1977-2023)

Oat, triticale, wheat and barley are small grain cereals used as forage in many temperate Mexican regions. The objective was to determine crude protein and van Soest fiber contents of these forages cut at 80, 96, 108, 121, 138 and 153 days after seeding. Cultivars used were: Chihuahua (OC) for oat; Arne (TA), Bicentenario (TB) and Siglo XXI (TS) for triticale; Saturno (WS) for wheat; and San Marcos (BSM) for barley. Experiment was under greenhouse conditions from November 2015 to May 2016. Crude protein (CP), neutral (NDF) and acid (ADF) detergents fibers were determined on the forage harvested at each …

Collection Priorities Of Pasture Genetic Resources In The Paniceae Native To South Africa, F. L. Müller, M. Trytsman, E. L. Masemola, M. I. Kgonothi, N. R. Mkhize, T. J. Tjelele

IGC Proceedings (1977-2023)

There is an urgent need for the prioritization and ex situ conservation of pasture grass species. Many pasture grasses are still in the process of domestication and grasslands in the tropical, subtropical, semi-arid and arid regions of the world are therefore a major source of genetic material for future forage improvement. Within South Africa, it was found that the Paniceae contains several species with high pasture value and that many populations of these species are found in water-limited environments. Therefore, it was proposed that a strategy be developed for the South African National Forage Genebank to prioritize efforts to collect …

Changes In Defoliation Patterns Of Plant Functional Groups Under Variable Herbage Allowance In Campos Grasslands, N. Caram, F. Casalás, Pablo Soca, M. Wallau, M. Cadenazzi, P. Boggiano

IGC Proceedings (1977-2023)

Several studies have evaluated separately forage production, botanical composition, leaf traits and animal performance. However, few of them have focused on defoliation patterns at the level of functional groups (FGs) under different and variable herbage allowance (HA), especially in natural, diverse grasslands. The objective was to evaluate the relationship between HA and leaf traits on defoliation patterns of mature beef cows in the autumn, winter and spring. We evaluated the grazing probability (GP), intensity of defoliation (ID), and leaf traits on 14 species that represent more than 80% of total dry matter of the pasture. The experiment at which we …

Deep Learning-Based Quality Assessment Of Clinical Protocol Adherence In Fetal Ultrasound Dating Scans, Sevim Cengiz, Mohammad Yaqub

Computer Vision Faculty Publications

To assess fetal health during pregnancy, doctors use the gestational age (GA) calculation based on the Crown Rump Length (CRL) measurement in order to check for fetal size and growth trajectory. However, GA estimation based on CRL, requires proper positioning of calipers on the fetal crown and rump view, which is not always an easy plane to find, especially for an inexperienced sonographer. Finding a slightly oblique view from the true CRL view could lead to a different CRL value and therefore incorrect estimation of GA. This study presents an AI-based method for a quality assessment of the CRL view …

Detection Of Ongoing Mass Loss From Hd 63433c, A Young Mini-Neptune, Michael Zhang, Heather A. Knutson, Lile Wang, Fei Dai, Leonardo A. Dos Santos, Luca Fossati, Gregory W. Henry, David Ehrenreich, Yann Alibert, Sergio Hoyer, Thomas G. Wilson, Andrea Bonfanti

Information Systems and Engineering Management Research Publications

We detect Lyα absorption from the escaping atmosphere of HD 63433c, a R = 2.67R_⊕, P = 20.5 day mini-Neptune orbiting a young (440 Myr) solar analog in the Ursa Major Moving Group. Using Hubble Space Telescope (HST)/Space Telescope Imaging Spectrograph, we measure a transit depth of 11.1 ± 1.5% in the blue wing and 8 ± 3% in the red. This signal is unlikely to be due to stellar variability, but should be confirmed by an upcoming second transit observation with HST. We do not detect Lyα absorption from the inner planet, a smaller …

Automatic Segmentation Of Head And Neck Tumor: How Powerful Transformers Are?, Ikboljon Sobirov, Otabek Nazarov, Hussain Alasmawi, Mohammad Yaqub

Computer Vision Faculty Publications

Cancer is one of the leading causes of death worldwide, and head and neck (H&N) cancer is amongst the most prevalent types. Positron emission tomography and computed tomography are used to detect and segment the tumor region. Clinically, tumor segmentation is extensively time-consuming and prone to error. Machine learning, and deep learning in particular, can assist to automate this process, yielding results as accurate as the results of a clinician. In this research study, we develop a vision transformers-based method to automatically delineate H&N tumor, and compare its results to leading convolutional neural network (CNN)-based models. We use multi-modal data …

Hubble Space Telescope Imaging Of Isolated Local Volume Dwarfs Galfa Dw3 And Dw4, P. Bennet, D. J. Sand, D. Crnojević, D. R. Weisz, N. Caldwell, P. Guhathakurta, J. R. Hargis, A. Karunakaran, B. Mutlu-Pakdil, E. Olszewski, J. J. Salzer, A. C. Seth, J. D. Simon, K. Spekkens, D. P. Stark, J. Strader, E. J. Tollerud, E. Toloba, B. Willman

Pacific Faculty Work

We present observations of the dwarf galaxies GALFA Dw3 and GALFA Dw4 with the Advanced Camera for Surveys on the Hubble Space Telescope. These galaxies were initially discovered as optical counterparts to compact H i clouds in the GALFA survey. Both objects resolve into stellar populations which display old red giant branch (RGB), younger helium-burning, and massive main sequence stars. We use the tip of the RGB method to determine the distance to each galaxy, finding distances of Mpc and Mpc, respectively. With these distances we show that both galaxies are extremely isolated, with no other confirmed objects within ∼1.5 …

Sentinel-1 Snow Depth Retrieval At Sub-Kilometer Resolution Over The European Alps, Hans Lievens, Isis Brangers, Hans-Peter Marshall, Tobias Jonas, Marc Olefs, Gabriëlle De Lannoy

Geosciences Faculty Publications and Presentations

Seasonal snow is an essential water resource in many mountain regions. However, the spatio-temporal variability in mountain snow depth or snow water equivalent (SWE) at regional to global scales is not well understood due to the lack of high-resolution satellite observations and robust retrieval algorithms. We investigate the ability of the Sentinel-1 mission to monitor snow depth at sub-kilometer (100 m, 500 m, and 1 km) resolutions over the European Alps for 2017–2019. The Sentinel-1 backscatter observations, especially in cross-polarization, show a high correlation with regional model simulations of snow depth over Austria and Switzerland. The observed changes in radar …

The Influence Of Local Embeddedness On The Economic, Social, And Environmental Sustainability Practices Of Regional Small Firms, Jalleh Sharafizad, Janice Redmond, Craig Parker

Research outputs 2022 to 2026

Despite growing research on economic, social, and environmental sustainability, few studies explore all three sustainability pillars and implemented practices, in the context of regional small firms. This study uses a novel integration of two theoretical concepts, local embeddedness, and sustainability embeddedness orientation, to fill this knowledge gap. Using 26 interviews, the study highlights the nuanced interconnectedness of three new theoretical concepts that link local embeddedness and sustainability embeddedness–locally embedded sustainability values, spatially-driven sustainability and locally adapted sustainability. An integrated theoretical framework is provided that uses the three new concepts to explain how and why small firm local embeddedness in regional …

Atomistic Engineering Of Phonons In Functional Oxide Heterostructures, Seung Gyo Jeong, Ambrose Seo, Woo Seok Choi

Physics and Astronomy Faculty Publications

Engineering of phonons, that is, collective lattice vibrations in crystals, is essential for manipulating physical properties of materials such as thermal transport, electron-phonon interaction, confinement of lattice vibration, and optical polarization. Most approaches to phonon-engineering have been largely limited to the high-quality heterostructures of III–V compound semiconductors. Yet, artificial engineering of phonons in a variety of materials with functional properties, such as complex oxides, will yield unprecedented applications of coherent tunable phonons in future quantum acoustic devices. In this study, artificial engineering of phonons in the atomic-scale SrRuO₃/SrTiO₃ superlattices is demonstrated, wherein tunable phonon modes are observed …

Atmospheric, Geomorphological, And Compositional Analysis Of Martian Asimov And Hale Craters: Implications For Recurring Slope Lineae, Fares M. Howari, Manish Sharma, Cijo M. Xavier, Yousef Nazzal, Fatima Alaydaroos

All Works

Recurring slope lineae (RSL) are small, dark, seasonal albedo features lengthening down “warm” Martian steep slopes. Their origin has been attributed to both liquid and dry processes, hence representing one of the major open science questions on present day Mars. In the present study, we report a catalog of previous literature and newly added RSL sites making a total of 940 sites globally on Mars along with the detailed geological and compositional investigation of the Hale and Asimov craters with their RSL features. We also estimate temperature and atmospheric water abundances in the study area, which are two of the …

Scanner: A Web Platform For Annotation, Visualization And Sharing Of Single Cell Rna-Seq Data, Guoshuai Cai, Xuanxuan Yu, Choonhan Youn, Jun Zhou, Feifei Xiao

Faculty Publications

In recent years, efficient scRNA-seq methods have been developed, enabling the transcriptome profiling of single cells massively in parallel. Meanwhile, its high dimensionality and complexity bring challenges to the data analysis and require extensive collaborations between biologists and bioinformaticians and/or biostatisticians. The communication between these two units demands a platform for easy data sharing and exploration. Here we developed Single-Cell Transcriptomics Annotated Viewer (SCANNER), as a public web resource for the scientific community, for sharing and analyzing scRNA-seq data in a collaborative manner. It is easy-to-use without requiring special software or extensive coding skills. Moreover, it equipped a real-time database …

Testing Effects Of Lorentz Invariance Violation In The Propagation Of Astroparticles With The Pierre Auger Observatory, P. Abreu, M. Aglietta, J. M. Albury, I. Allekotte, K. Almeida Cheminant, A. Almela, B. Fick, D. Nitz, A. Puyleart, Et. Al.

Michigan Tech Publications, Part 1

Lorentz invariance violation (LIV) is often described by dispersion relations of the form E i2 = m i2+p i2+δi,n E 2+n with delta different based on particle type i, with energy E, momentum p and rest mass m. Kinematics and energy thresholds of interactions are modified once the LIV terms become comparable to the squared masses of the particles involved. Thus, the strongest constraints on the LIV coefficients δi,n tend to come from the highest energies. At sufficiently high energies, photons produced by cosmic ray interactions as they propagate through the Universe could be subluminal and unattenuated over cosmological distances. …

Synthesis And Biosynthesis Of 3-Hydroxy-Β-Lactam Antibiotics, Wei Wei

Arts & Sciences Graduate Student Theses and Dissertations

Novel treatments for tuberculosis (TB) are urgently needed to conquer this global health crisis. Unlike canonical β-lactam antibiotics that target transpeptidases by hydrolyzing the lactam ring, tabtoxinine-β-lactam (TβL) functions as a potent glutamine synthetase (GS) inhibitor by forming a transition state mimic. TβL has the potential to be used as an anti-TB agent by targeting the nitrogen metabolic pathway of pathogenic mycobacteria. This work reported an innovative, convergent, and flexible cross-metathesis method to obtain the fully protected TβL scaffold. The trans-olefin intermediate provides possibilities for synthesizing various derivatives through alkene functionalization reactions. We also developed and optimized a solid phase …

Tibetan Dust Accumulation Linked To Ecological And Landscape Response To Global Climate Change, Xianmei Huang, Xiaodong Miao, Qiufang Chang, Jiemei Zhong, Joseph A. Mason, Paul R. Hanson, Xianjiao Ou, Liubing Xu, Zhongping Lai

School of Natural Resources: Faculty Publications

The Tibetan Plateau (TP) is a hotspot of earth system research, and understanding its landscape and ecosystem evolution has been hampered by the lack of time-constrained geological records. Geochronological data from 14 loess sites covering a large region in the Tibetan interior show that the TP loess, rather than accumulating during glacial periods, began aggrading at either 13.4 ± 0.4 or 9.9 ± 0.2 ka. An ecological threshold was crossed, when warmer and wetter conditions resulted in increased vegetation cover enabling dust trapping. This dust accumulation model is out of phase with that of the Chinese Loess Plateau (CLP) where …

Is Contrastive Learning Suitable For Left Ventricular Segmentation In Echocardiographic Images?, Mohamed Saeed, Rand Muhtaseb, Mohammad Yaqub

Computer Vision Faculty Publications

Contrastive learning has proven useful in many applications where access to labelled data is limited. The lack of annotated data is particularly problematic in medical image segmenta-tion as it is difficult to have clinical experts manually annotate large volumes of data. One such task is the segmentation of cardiac structures in ultrasound images of the heart. In this paper, we argue whether or not contrastive pretraining is helpful for the segmentation of the left ventricle in echocardiography images. Furthermore, we study the effect of this on two segmentation networks, DeepLabV3, as well as the commonly used segmentation net-work, UNet. Our …

Is It Possible To Predict Mgmt Promoter Methylation From Brain Tumor Mri Scans Using Deep Learning Models?, Numan Saeed, Shahad Hardan, Kudaibergen Abutalip, Mohammad Yaqub

Computer Vision Faculty Publications

Glioblastoma is a common brain malignancy that tends to occur in older adults and is almost always lethal. The effectiveness of chemotherapy, being the standard treatment for most cancer types, can be improved if a particular genetic sequence in the tumor known as MGMT promoter is methylated. However, to identify the state of the MGMT promoter, the conventional approach is to perform a biopsy for genetic analysis, which is time and effort consuming. A couple of recent publications proposed a connection between the MGMT promoter state and the MRI scans of the tumor and hence suggested the use of deep …

Challenges In Covid-19 Chest X-Ray Classification: Problematic Data Or Ineffective Approaches?, Muhammad Ridzuan, Ameera Ali Bawazir, Ivo Gollini Navarrete, Ibrahim Almakky, Mohammad Yaqub

Computer Vision Faculty Publications

The value of quick, accurate, and confident diagnoses cannot be undermined to mitigate the effects of COVID-19 infection, particularly for severe cases. Enormous effort has been put towards developing deep learning methods to classify and detect COVID-19 infections from chest radiography images. However, recently some questions have been raised surrounding the clinical viability and effectiveness of such methods. In this work, we carry out extensive experiments on a large COVID-19 chest X-ray dataset to investigate the challenges faced with creating reliable solutions from both the data and machine learning perspectives. Accordingly, we offer an in-depth discussion into the challenges faced …

James Webb Space Telescope's Enlightening Journey Is Underway, Erik Johnson

Natural Science Faculty

A rocket carrying the successor to the Hubble Space Telescope launched on Christmas. Astronomers hope that the James Webb Space Telescope will provide insight about the earliest stage of the universe when it orbits about one million miles from Earth. The Staerkel Planetarium collaborated with the Illinois Space Grant Consortium to promote the launch of this revolutionary device.

Positivity Among P-Partition Generating Functions, Nathan R. T. Lesnevich, Peter R. W. Mcnamara

Faculty Journal Articles

We seek simple conditions on a pair of labeled posets that determine when the difference of their (P,ω)-partition enumerators is F-positive, i.e., positive in Gessel's fundamental basis. This is a quasisymmetric analogue of the extensively studied problem of finding conditions on a pair of skew shapes that determine when the difference of their skew Schur functions is Schur-positive. We determine necessary conditions and separate sufficient conditions for F-positivity, and show that a broad operation for combining posets preserves positivity properties. We conclude with classes of posets for which we have conditions that are both necessary and …

Annals Of Forest Science Promotes Multidisciplinary Research On Forests And Wood In A Changing World And Is Now A Full Open Access Journal, Erwin Dreyer, Jean Michel Leban, Shuguang Léo Liu, Andreas Bolte, John M. Lhotka, Marco Ferretti, Véronique Lesage

Forestry and Natural Resources Faculty Publications

No abstract provided.

Sociodemographic And Clinical Characteristics Associated With Improvements In Quality Of Life For Participants With Opioid Use Disorder, Assaf Gottlieb, Christine Bakos-Block, James R Langabeer, Tiffany Champagne-Langabeer

Faculty, Staff and Student Publications

Background: The Houston Emergency Opioid Engagement System was established to create an access pathway into long-term recovery for individuals with opioid use disorder. The program determines effectiveness across multiple dimensions, one of which is by measuring the participant's reported quality of life (QoL) at the beginning of the program and at successive intervals.

Methods: A visual analog scale was used to measure the change in QoL among participants after joining the program. We then identified sociodemographic and clinical characteristics associated with changes in QoL.

Results: 71% of the participants (n = 494) experienced an increase in their QoL scores, …

Can Livestock Alone Be The Main Source Of Income From Rangelands In Poor Countries?, Hossein Arzani, Mohammad Jafari, H. Moradii

IGC Proceedings (1977-2023)

In many countries due to the high population of land holders, there is insufficient range area for each land holder to cover all life expenses. In such places, the income of only livestock in rangelands is not enough to cover living expenses of landholders. The ideas in this paper suggest that researchers should create and explore economic models that incorporate the multiple use concept in rangelands and show how multiple uses are compatible with livestock grazing and to sustain the livelihood of rangeland families.