Physical Sciences and Mathematics Commons^™

Raspberry Pi Radio Scanner Control Web Application, Jackson Marshall Strand

Computer Science and Software Engineering

In this senior project I design and develop software for the Raspberry Pi which allows the user to listen to and control a scanner radio anywhere in their home. The solution involves utilizing a Raspberry Pi 2 interfaced with the radio, a software package to communicate directly with the radio, and a web app hosting a web client providing the interface for user control. Audio streaming is achieved through the use of FFmpeg. Listening on the client is achieved by using an external software such as Video Lan (VLC) to open the audio stream. We provide an operable proof-of-concept with …

Black Holes Modeled As Fluid Droplets On Membranes, Anthony Bardessono

Physics

No abstract provided.

Real-Time, Non-Contact Heart Rate Monitor, Daniel Blike

Computer Engineering

No abstract provided.

Positive And Negative Gps-Tec Ionospheric Storm Effects During The Extreme Space Weather Event Of March 2015 Over The Brazilian Sector, P. R. Fagundes, F. A. Cardoso, B. G. Fejer, K. Venkatsch, B.A. G. Ribeiro, V. G. Pillat

All Physics Faculty Publications

We studied the response of the ionosphere (F region) in the Brazilian sector during extreme space weather event of 17 March 2015 using a large network of 102 GPS- total electron content (TEC) stations. It is observed that the vertical total electron content (VTEC) was severely disturbed during the storm main and recovery phases. A wavelike oscillation with three peaks was observed in the TEC diurnal variation from equator to low latitudes during the storm main phase on 17_18 March 2015. The latitudinal extent of the wavelike oscillation peaks decreased from the beginning of the main phase toward the recovery …

Mechanism Of Lysine 48 Selectivity During Polyubiquitin Chain Formation By The Ube2r1/2 Ubiquitin-Conjugating Enzyme, Spencer Hill, Joseph S. Harrison, Steven M. Lewis, Brian Kuhlman, Gary Kleiger

College of the Pacific Faculty Articles

Lysine selectivity is of critical importance during polyubiquitin chain formation because the identity of the lysine controls the biological outcome. Ubiquitins are covalently linked in polyubiquitin chains through one of seven lysine residues on its surface and the C terminus of adjacent protomers. Lys 48-linked polyubiquitin chains signal for protein degradation; however, the structural basis for Lys 48 selectivity remains largely unknown. The ubiquitin-conjugating enzyme Ube2R1/2 has exquisite specificity for Lys 48, and computational docking of Ube2R1/2 and ubiquitin predicts that Lys 48 is guided to the active site through a key electrostatic interaction between Arg 54 on ubiquitin and …

An Investigation Into The Use Of Polymer Bound Boronic Acid For Glucose Detection In Paper Based Microfluidic Devices, Spencer A. Schultz

Master's Theses

Paper Based Microfluidic Devices (microPADs) are a new platform for point-of-care diagnostic assays for use in resource-limited settings. These devices rely typically on enzymatic assays to produce their results, which makes them susceptible to degradation when exposed to extreme environmental conditions such as high temperature. In order to overcome this limitation, this research project focused on investigating the use of polymers instead of enzymes to detect analytes on microPADs.

Polymer-bound boronic acid, a glucose and pH sensitive polymer, was incorporated into microPADs in order to develop a chronometric, paper-based glucose assay. The polymer was tested with both lateral and vertical …

Enhancing Digestibility And Ethanol Yield Of Populus Wood Via Expression Of An Engineered Monolignol 4-O-Methyltransferase, Yuanheng Cai, Kewei Zhang, Hoon Kim, Guichuan Hou, Xuebin Zhang, Huijun Yang, Huan Feng, Lisa Miller, John Ralph, Chang-Jun Liu

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Producing cellulosic biofuels and bio-based chemicals from woody biomass is impeded by the presence of lignin polymer in the plant cell wall. Manipulating the monolignol biosynthetic pathway offers a promising approach to improved processability, but often impairs plant growth and development. Here, we show that expressing an engineered 4-O-methyltransferase that chemically modifies the phenolic moiety of lignin monomeric precursors, thus preventing their incorporation into the lignin polymer, substantially alters hybrid aspens’ lignin content and structure. Woody biomass derived from the transgenic aspens shows a 62% increase in the release of simple sugars and up to a 49% increase in the …

Book Reviews: A Chorus Of Cranes: The Cranes Of North America And The World. Paul A. Johnsgard (With Photographs By Thomas D. Mangelsen, And Drawings And Maps By Paul A. Johnsgard)., John G. Sidle

The Prairie Naturalist

Once again, naturalist and author Paul A. Johnsgard invites us to dance and chorus with cranes, and to appreciate their beauty and links to another species, Homo sapiens. A Chorus of Cranes is about natural history but also is a plea for conservation, which is a common foreword, prologue, preface, and/or epilogue of many wildlife books. It is vintage Paul Johnsgard text from preface to epilogue, words that emerge after a long wade through countless papers and reports, and a prolonged career of observation and reflection in the field. He has beckoned us before to cherish cranes and the natural …

Resource Selection By Black-Backed Woodpeckers (Picoides Arcticus) And American Three-Toed Woodpeckers (P. Dorsalis) In South Dakota And Wyoming, Sean R. Mohren, Mark A. Rumble, Chadwick P. Lehman, Stanley H. Anderson

The Prairie Naturalist

Black-backed woodpeckers (Picoides arcticus, [BBWO]) and American three-toed woodpeckers (P. dorsalis, [ATTW]) are uncommon inhabitants of conifer forests and are sympatric in some areas, including the Black Hills. Both species exhibit genetic characteristics associated with isolated populations, are species of special management concern, and for which data are lacking concerning populations and habitats. We developed resource selection models of forest vegetation within 500 m radius plots (78.5 ha) for BBWOs and ATTWs to provide forest managers with stand-level information to estimate how forest management might affect habitat for these species in the Black Hills. Relative probability of selection by BBWOs …

Missing The Point, Christopher N. Jacques

The Prairie Naturalist

Greetings GPNSS members! I hope summer finds you well and enjoying the Great Plains in some way, whether that be getting your hands dirty with field work, a reprieve from the office, anxiously awaiting the crappie bite at your favorite lake, or taking a much needed vacation. For those who enjoy cooler temperatures, summer heat and humidity are challenging and even the most seasoned field biologists among us are tested when fighting the conditions doing what we are passionate about. I personally prefer the fall and winter seasons, though also look forward to summer because it offers me a break …

The Science Of Open Spaces: Theory And Practice For Conserving Large, Complex Systems. Charles G. Curtin., Michelle L. Hellman, Caleb P. Roberts, Hannah Birge, Zachary Warren, Craig R. Allen

The Prairie Naturalist

The phrase “open spaces,” may bring to mind expansive tracts of prairie, rangeland, or even desert, stretching lonely and unchanged to the horizon. Open spaces also could conjure open oceans or interstitial rural lands between urbanized hubs, dotted with farms, fields, and woodlands. In an abstract sense, open spaces could represent gaps in human understanding or blank spaces on a map. In his book The Science of Open Spaces, landscape ecologist Charles Curtin combines all these perspectives, expanding the definition of “open spaces” to multi-layered and multi-scaled complex systems that are “greater than the sum of their parts.” He populates …

Book Review: Better Birding: Tips, Tools, And Concepts For The Field. George L. Armistead And Brian L. Sullivan., Stephen J. Dinsmore

The Prairie Naturalist

George Armistead and Brian Sullivan have written a book whose aim is to provide birders with a solid foundation upon which to develop better birding skills. They advocate a more holistic approach to bird identification than simply looking at a set of predetermined field marks. To that end, their approach combines traditional field identification approaches with behavioral and habitat cues, as well as natural history, to broaden bird identification skills. This is not the first book to make a case for looking at bird identification more broadly, although their specific approach seems unique. The authors offer constructive criticism of “traditional” …

Mink Predation Of Brown Trout In A Black Hills Stream, Jake Davis, Jerry W. Wilhite, Steven R. Chipps

The Prairie Naturalist

In the early 2000’s, declines in the brown trout (Salmo trutta) fishery in Rapid Creek, South Dakota, caused concern for anglers and fisheries managers. We conducted a radio telemetry study in 2010 and 2011 to identify predation mortality associated with mink, using hatchery-reared (2010) or wild (2011) brown trout. Estimated predation rates by mink (Mustela vison) on radio-tagged brown trout were 30% for hatchery fish and 32% for wild fish. Size frequency analysis revealed that the size distribution of brown trout lost to predation was similar to that of other, radio-tagged brown trout. In both years, a higher proportion of …

Estimability Tools For Package Developers, Russell V. Lenth

The R Journal

When a linear model is rank-deficient, then predictions based on that model become questionable because not all predictions are uniquely estimable. However, some of them are, and the estimability package provides tools that package developers can use to tell which is which. With the use of these tools, a model object’s predict method could return estimable predictions as-is while f lagging non-estimable ones in some way, so that the user can know which predictions to believe. The estimability package also provides, as a demonstration, an estimability-enhanced epredict method to use in place of predict for models fitted using the stats …

Raspberry Pi Vpn Travel Router, Daniel S. Pierson

Computer Science and Software Engineering

Consumers are increasingly relying on public wireless hotspots to access the internet from a growing number of devices. Usage of these hotspots has expanded from just laptops to everything from iPhones to tablets, which are expected to be internet-connected for full functionality. It has become common for one to check if there’s an open wireless hotspot connection available at places like coffee shops, hotels, restaurants, or even a doctor’s waiting room. The issue that arises is that these public connections present an inherent security risk, as anyone can connect and gain access to the network. For increased security, the use …

Dallimi Mes Agile Dhe Plan Driven, Dea Macula

Theses and Dissertations

Softueri ka qenë pjesë e tregut modern për shumë vite. Kemi disa metodologji të zhvillimit që përdoren në ditët e sotme. Burimet e pakta, konkurenca e ashpër si dhe kërkesat gjithnjë e në ndryshim të biznesit kërkojnë modele të zhvillimit të softuerit që janë sa më efikase dhe fleksibile. Edhe pse disa prej kompanive kanë metodologjinë e tyre përshtatëse të zhvillimit, pjesa më e madhe përodrin dy prej llojeve më të njohur siq janë: Plan Drvien dhe Agile metodologjitë. Plan Driven metodologjitë konsiderohen si formë tradicionale e zhvillimit të softuerit që përkrahin planifikimin e plotë, dokumentacion të detajuar dhe dizjan …

Prosense, Johnny Favazza Ii, Casey Glasgow, Matt Epperson

Computer Engineering

This project aims to gather advanced data sets from MEMS sensors and GPS and deliver it to the user, who can capitalize on the data. The once negligible half-degree difference of your board barreling down a wave can be recorded from a gyro and exploited for the perfect turn. The exact speed dreaded by longboarders where speed wobbles turn into a road rash can be analysed and consequently avoided. Ascertaining the summit of your flight using combined GPS sensors from the ski ramp allows for the correct timing of tricks. When it comes to pursuing excellence in professional sports, amateur …

Musictrakr, Benjamin Lin

Computer Engineering

MusicTrackr is an IoT device that musicians attach to their instruments. The device has a start and stop button that allows users to record their playing sessions. Each recorded session is sent wirelessly to a cloud database. An accompanying website displays all of the recorded sessions, organized by date. After picking a specific date, the user can view graphs showing total practice time and average session length as well play back any recordings during that date. In addition, the user may add comments to any specific date or recording. Lastly, the user may tag a specific date with a color …

Development Of Utility Theory And Utility Paradoxes, Timothy E. Dahlstrom

Lawrence University Honors Projects

Since the pioneering work of von Neumann and Morgenstern in 1944 there have been many developments in Expected Utility theory. In order to explain decision making behavior economists have created increasingly broad and complex models of utility theory. This paper seeks to describe various utility models, how they model choices among ambiguous and lottery type situations, and how they respond to the Ellsberg and Allais paradoxes. This paper also attempts to communicate the historical development of utility models and provide a fresh perspective on the development of utility models.

Electron Beam Effects In Ge–Se Thin Films And Resistance Change Memory Devices, Kasandra Wolf, Hugh Barnaby, Mahesh S. Ailavajhala, Micahel N. Kozicki, Dmitri A. Tenne, Maria Mitkova

Physics Faculty Publications and Presentations

Chalcogenide glasses are the advanced materials of choice for the emerging nanoionic memory devices – conductive bridge random access memory (CBRAM). To understand the nature of the effects occurring in these devices under influence of electron-beam radiation, the interaction of blanked chalcogenide films and nanostructured films containing chalcogenide glass and silver (Ag) source are studied. Raman spectroscopy, energy-dispersive X-ray spectroscopy and X-ray diffraction are used for establishing the structural and compositional effects occurring under radiation. They have strong compositional dependence with the stoichiometric compositions being most stable showing less structural changes after radiation. These effects are associated with the availability …

Farmstead Planning: Old Farm Buildings Repurposed For Better Farming: How To Develop A Complex, Stephen F. Higgins, Lee Moser

Agriculture and Natural Resources Publications

Farming is probably one of the most complex means of earning a living that has been devised. The many components of a farming operation that have to be managed would create an extensive list. Many beef cattle producers might focus on reproduction, nutrition, forages, health, and handling. However, there are many others operational considerations that are just as important.

Photoexcited Carrier Trapping And Recombination At Fe Centers In Gan, T. K. Uždavinys, S. Marcinkevičius, J. H. Leach, K. R. Evans, David C. Look

Physics Faculty Publications

Fe doped GaN was studied by time- resolved photoluminescence (PL) spectroscopy. The shape of PLtransients at different temperatures and excitation powers allowed discrimination between electron and hole capture to Fe3+ and Fe2+ centers, respectively. Analysis of the internal structure of Fe ions and intra-ion relaxation rates suggests that for high repetition rates of photoexciting laser pulses the electron and hole trapping takes place in the excited state rather than the ground state of Fe ions. Hence, the estimated electron and hole capture coefficients of 5.5 × 10−8 cm3/s and 1.8 × 10−8 cm3/s should be attributed to excited Fe3+ and …

Optical Bistability In A Vcsel Coupled To Serially-Connected Pin Photodiodes Quantizer Device, Sanaz Faryadras

Graduate Theses - Physics and Optical Engineering

In this work we investigated the structure and performance of vertical cavity surface emitting lasers (VCSEL) which will be used in building an optical quantizer. In any p-i-n structure, capacitance is the most important factor in deciding the highest modulation speed. Therefore, components with smaller capacitance would show higher switching speed. A novel electrical quantizer was constructed using two identical 850 nm Finisar VCSELs, which could manifest electrical switching up to 1.4 MHz. Also, a new electrical quantizer was built with two Eudyna PIN photodiodes (PD-PD), which works at higher frequencies up to 8 MHz, comparing to previous works. The …

Development And Characterization Of Reagent Pencils For Microfluidic Paper Based Analytical Devices, Cheyenne H. Liu

Master's Theses

Microfluidic paper based analytical devices (microPADs) are a novel platform for point of care (POC) diagnostics. Limitations of reagent shelf life have been overcome with the introduction of reagent pencils as a method for solid-based reagent deposition. While useful, little work has been reported on the characterization and optimization of reagent pencils. Herein, an investigation on reagent pencil composition and efficiency is conducted via colorimetric release profile tests utilizing an erioglaucine disodium salt that yields a quantifiable blue colored product in the presence of water. Within this work, an investigation on the molecular weight dependence, polymer chain end functionality, and …

Processing Of Simulated And Experimental Images Of Closely Spaced Binary Stars Using Speckle Interferometry, Niels Smidth

Master's Theses

Theory and methods of processing speckle interferometry data from close visual binary stars are presented and implemented. The effects of the optical systems used for observing close visual binary stars are explained and simulated from both the geometrical and physical optical viewpoints. The atmospheric phase distortion and shot noise responsible for the observed speckle patterns are simulated. The deconvolution technique originally presented by Labeyrie is implemented to extract astrometric data from close visual binary stars. This method is applied to both simulated and experimental data from Kitt Peak National Observatory as validation. Parts of the deconvolution process are optimized to …

Lower Scotts Creek Floodplain And Habitat Enhancement Project, Benjmain O. Cook

Master's Theses

Scotts Creek, located in northern Santa Cruz County, maintains the southernmost persistent population of Central California Coast (CCC) Coho Salmon (endangered) in addition to CCC steelhead (threatened). Fisheries biologists believe overwinter mortality due to lack of refuge habitat is the primary factor limiting salmonid production. Instream rearing habitat may also be limiting, especially during drought years. The legacy effects of historic land use practices, including dredging, wood removal, and the construction of levees, continued to limit refuge and rearing opportunities. A restoration project was implemented to improve refuge and rearing opportunities for salmonids along lower Scotts Creek by removing portions …

An Early Assessment Of Medium Range Monsoon Precipitation Forecasts From The Latest High-Resolution Ncep-Gfs (T1534) Model Over South Asia, Satya Prakash, Imaranali M. Momin, Ashis K. Mitra, Partha S. Bhattacharjee, Fanglin Yang, Vijay Tallapragada

Publications and Research

Reliable prediction of the South Asian monsoon rainfall and its variability is crucial for various hydrological applications and early warning systems. The National Centers for Environmental Prediction – Global Forecast System (NCEP–GFS) is one of the popular global deterministic numerical weather prediction models, which is recently upgraded from T574 to T1534. In this paper, medium range monsoon precipitation forecasts from both the T1534 and T574 models are critically evaluated over the South Asia for the peak monsoon months (July and August) of 2015. Although both the versions of GFS model show similar large-scale monsoon rainfall patterns, the dry bias over …

Concatenative Synthesis For Novel Timbral Creation, James Eric Bilous

Master's Theses

Modern day musicians rely on a variety of instruments for musical expression. Tones produced from electronic instruments have become almost as commonplace as those produced by traditional ones as evidenced by the plethora of artists who can be found composing and performing with nothing more than a personal computer. This desire to embrace technical innovation as a means to augment performance art has created a budding field in computer science that explores the creation and manipulation of sound for artistic purposes. One facet of this new frontier concerns timbral creation, or the development of new sounds with unique characteristics that …

Automating Self Evaluations For Software Engineers, Jonathan Rodrigo A. Miranda

Master's Theses

Software engineers frequently compose self-evaluations as part of employee perfor- mance reviews. These evaluations can be a key artifact for assessing a software engineer’s contributions to a team and organization, and for generating useful feed- back. Self-evaluations can be challenging because a) they can be time consuming, b) individuals may forget about important contributions especially when the review period is long such as a full year, c) some individuals can consciously or unconsciously overstate their contributions, and d) some individuals can be reluctant to describe their contributions for fear of appearing too proud [24].

UNBIASED, Useful New Basic Interactive Automated …

Construction Of Energy Preserving Qmf, Jian-Ao Lian, Yonghui Wang

Applications and Applied Mathematics: An International Journal (AAM)

Recently, a family of perfect reconstruction (PR) quadrature mirror filterbanks (QMF) with finite impulse response filters (FIR) from systems of biorthogonal refinable functions and wavelets were introduced and also applied to image processing. However, a detailed procedure was absent. The main objective of this paper is to present extensive examples that will provide a thorough process of construction of the new family of PR QMF with FIR filterbanks. These new filters are linearphase due to the symmetry property of their corresponding biorthogonal refinable functions and wavelets. In addition, these filters have odd lengths so that the symmetric extension can be …