Physical Sciences and Mathematics Commons^™

Buffer Vs. Swabs: Efficacy Of Carrier Nucleic Acids In Robotic Extractions, Shawn Cecil

Honors Projects

This study compared the efficiency of two carrier nucleic acid methods, specifically using salmon sperm DNA (spDNA), in robotic solid-phase extractions of cotton swab samples. Robotic extractions reduce processing time and workload but result in substantially lower DNA recovery than manual organic extraction. This research tested 10 µg of spDNA being added to the lysis buffer or pre-treating the swabs with it before DNA was added. Both methods showed a significant increase in recovery compared to extractions with no carrier. In the buffer extractions, recovery ranged from 69.4% to 117.5% and the swabs being pre-treated ranged from 84.2% to 125.8% …

Understanding Enso Through Mathematical Models, Maria I. Sanchez Muniz

Open Educational Resources

This assignment introduces students to conceptual models of the El Niño–Southern Oscillation (ENSO) and guides them through a structured investigation of their physical and mathematical foundations. Students analyze the recharge–oscillator and delayed–oscillator frameworks, explore how differential equations capture ocean–atmosphere interactions, and evaluate parameter-driven changes in oscillatory behavior. A key component of the work is the guided use of generative AI as a research tool: students employ AI models to locate peer-reviewed literature, interrogate model extensions, and refine their understanding of complex mechanisms, while synthesizing all final explanations in their own words. By blending classical climate modeling with modern AI-supported inquiry, …

Systematics And Systems Theory: Reconstructability Analysis Of The Tetrad, Martin Zwick

Complex Systems Faculty Publications and Presentations

This talk discusses the relationship between systems theory, specifically Reconstructability Analysis, and Systematics, a systems theory-like framework of number symbolism developed by John G. Bennett, which he presented in his four-volume magnum opus, The Dramatic Universe. The talk, given to a community of people interested in Bennett's ideas, focuses on Martin Zwick's paper "Ideas and Graphs: the Tetrad of Activity" archived at https://archives.pdx.edu/ds/psu/36249.

Adaptive Image Acquisition Algorithms For Resource-Constrained Single-Photon Cameras, Yeganeh Jalalpour, Wu-Chi Feng

Computer Science Faculty Publications and Presentations

Emerging single-photon camera (SPC) technologies have unique challenges in data acquisition and processing. Unlike conventional sensors that produce a single 8- to 16-bit brightness value per pixel, SPCs record photon arrivals with many more samples per pixel, using high floating-point precision for each photon collected. This means that they must handle potentially millions of timestamps, especially at higher spatial resolutions and in the presence of ambient light, creating bottlenecks within the pixel circuitry. To address these challenges associated with SPCs, this paper proposes adaptive algorithms designed to efficiently distribute hardware resources among groups of pixels. By selectively subsampling the data …

Examining The Intersectional And Structural Issues Of Routine Healthcare Utilization And Access Inequities For Lgb People With Chronic Diseases, Shiya Cao, Mehreen Mirza, Sophia Silovsky, Nicole Tresvalles, Lucia Qin, Sarah Susnea

Statistical and Data Sciences: Faculty Publications

In the United States, although the gaps in health insurance coverage by sexual orientation have been closing since the implementation of the Affordable Care Act and legalization of same-sex marriage, the LGB group (i.e., lesbian, gay, bisexual) continues to report healthcare utilization and access inequities such as more delayed or unmet care. The extant research has often examined healthcare utilization and access inequities due to affordability (e.g., out-of-pocket costs). However, healthcare utilization and access inequities are only partially explained by cost reasons; there are non-cost reasons that have not been adequately empirically examined. The present study innovatively includes discrimination structural …

Dynamic, Reconfigurable, And Hierarchical Biosynthetic Composites Via Collagen Self-Assembly Within Highly Crowded Microgel Pastes, Elif Narbay, Abbygail Caine, Sanika Pandit, Gabrielle Montgomery, Marion Harper, E. Daniel Cárdenas-Vásquez, Hatte Hamilton, Megan Hicks, Daniel Mattar, Kyle Choy, Marco Bisoffi, L. Andrew Lyon

Engineering Faculty Articles and Research

The fabrication of a new class of biomimetic biomaterials is reported using nanostructured microgel pastes formed from “overpacked” assemblies of ultrasoft poly(N-isopropyl acrylamide-co-acrylic acid) microgels and their composites with collagen. Despite the solid-like nature of microgel pastes, collagen fibrillogenesis is robust and rapid, with a 3D collagen network forming throughout the paste volume. Structural organization within the composite is interrogated via a suite of microscopy methods, while rheological characterization provides insight into the static and dynamic mechanical properties of the materials. Long-range fibrillogenesis is enabled by local crowding, dynamics, and spatial reconfigurability of pastes at the …

Hint-Guided Video Frame Interpolation For Video Compression, Pan Tan, Wu-Chi Feng

Computer Science Faculty Publications and Presentations

Traditional video compression continues to advance, but the gainsin efficiency are diminishing and come at the cost of higher compu-tational complexity. Despite achieving competitive rate-distortionresults, current neural video codecs (NVCs) generally lack sup-port for a wide range of quality levels, often requiring multiplemodels to achieve flexible rate control, which increases both train-ing cost and deployment complexity. To address the limitations ofboth traditional codecs and current NVCs, we propose a hybridvideo compression framework that integrates traditional codecswith hint-guided video frame interpolation (VFI), a learning-basedtechnique for synthesizing intermediate frames. By using decodedreference frames and leveraging compressed-domain hints to guideinterpolation, our method improves …

Stream Behavior Characterization Of Marin County Coastal Watersheds And Their Influence On Salmonid Habitat, Ellie L. Murdoch

Master's Theses

Coastal watersheds in California are increasingly affected by climatic variability, threatening stream behavior, ecological function, and salmonid habitat suitability. This study evaluated streamflow behavior of seven watersheds in Marin County, California, with detailed analysis of Corte Madera, Olema, and Redwood watersheds, which are not influenced by reservoir releases. Using USGS stream gauge records, PRISM climate data, SSURGO soils, and geologic and vegetation information, streamflow metrics critical to salmonid life cycles were quantified for water years 2014 to 2023. Watersheds with greater storage capacity, such as Redwood, exhibited muted hydrologic responses, including delayed flow activation, lower peak flows, slower recession rates, …

A (Mini) Mathematics Research Experience In A Math Teachers’ Circle Session, Michelle Manes, Linda Venenciano, Seanyelle Yagi

Journal of Math Circles

We describe a single Math Teachers’ Circle session during which a group of teachers collectively engaged in a “mini mathematics research experience.” This provides a model for providing research experiences for mathematics teachers through content-based professional development programs. We conjecture that these experiences will have many of the same benefits as research experiences for teachers in lab sciences.

Timss 2023 – Infographic: Future Pd Needs Of Maths Teachers, Jo Earp

Teacher infographics

The IEA’s Trends in International Mathematics and Science Study (TIMSS) is a global assessment measuring student achievement in years 4 and 8. Teachers from participating schools also complete a questionnaire. Today’s infographic looks at the topics that mathematics teachers reported needing professional development on in the future.

Early Warning Detection Of Gravitational Waves With Sgnl, Megan Norris

Honors Theses

Gravitational waves (GWs) provide a whole new spectrum with which to observe astrophysical events. Multi-messenger observations including GWs are of particular interest, and these are best facilitated by early warning searches of GWs, which are typically aimed at detecting binary neutron star (BNS) mergers. This work provides an introductory overview of gravitational waves and summarizes the origins and basic physical properties of neutron stars and black holes in binary systems, focusing on BNS mergers and the detection of gravitational waves with LIGO using a modeled search. We assess the performance of a new GW search pipeline called SGNL to evaluate …

Exploring Healthcare Providers' Perceptions Of Virtual Reality In Lung Cancer Treatment Preparedness: A Mixed-Methods Feasibility Study For The Development Of Everybreathmatters, Safa Elkefi, Rongyi Wu, Steven K. Feiner, Lanyi Chen, Guy Hembroff, Alicia K. Matthews

Michigan Tech Publications

This study examined healthcare providers' perceptions of the benefits, challenges, and design preferences for Virtual Reality (VR)-based interventions to support treatment preparedness in lung cancer care. Our study involves 50 surveys and 10 interview responses, in a mixed-method design. We conducted descriptive statistics and thematic analysis through a hybrid inductive-deductive approach. Analysis of the quantitative data helped us capture demographic characteristics, VR familiarity, and perceived VR usefulness. Qualitative analysis gave us a deeper understanding of the VR tool design and Implementation. Descriptive statistics and Fisher's exact tests were used to assess associations, while thematic analysis was conducted on interview transcripts. …

Environmental Risk Assessment Of Textile Waste From Bio-Engineered Fibers In The Fashion Industry, Aayush Pankaj Agarwal, Harshit Soral, Irmak Aktan, Karol Montserrat Gonzalez Saad, Maria Daniela Saa Espinosa, Sheetal Suhas Dhanuka, Yi Yang

Harrisburg University Dissertations and Theses

The global fashion industry generates over 92 million tons of textile waste annually, a figure projected to increase significantly by 2030. Bio-engineered fibers, including bacterial cellulose, mycelium-based leather, and recombinant protein textiles emerge as sustainable alternatives to conventional fibers. Despite their promise, recent evidence suggests that these fibers may pose environmental risks at the end-of-life stage, such as incomplete biodegradation in landfills, microfiber shedding, and chemical leaching from dyes and coatings. The purpose of this study is to examine how these risks are represented through scientific literature, corporate sustainability reports, and policy frameworks, and to identify strategies for integrating risk …

A Study Of The Stratigraphic And Petrological Characteristics Of Section (10,323-10,325 Ft), Prevost 1- 11, Bay County, Michigan, Hajir Al Harthi

Honors Theses

This study presents a detailed petrological characterization of a short core section (10,323-10,325 ft) from the Prevost 1-11, Bay County, Michigan. This work is part of a broader carbon capture, utilization, and storage (CCUS) project to determine whether the Glenwood Formation could be an effective confining unit (CU) for carbon dioxide (CO2) injection in the underlying St. Peter Sandstone. The methods used to collect petrological data include standard core description, Xray fluorescence spectroscopy (XRF), powder X-ray diffraction (XRD), thin section microscopy, and scanning electron microscopy (SEM) including backscattered electron (BSE), energydispersive X-ray spectroscopy (EDS), and secondary electron (SE) modes. These …

Capstone Reflection: Developing A Muslim Prayer App For Psu Students, Jeremiah Su

University Honors Theses

This thesis examines the development process of the Muslim Student Association (MSA) App, a computer science capstone project. The app strives to help the Muslim community at Portland State University (PSU) and the Portland area by consolidating essential information for prayers, such as local prayer times, nearby masjids, and the direction of Qibla. The team behind this project was developed by 6 computer science developers, a majority of whom were from the Muslim culture and background. This paper describes the entire capstone development process from the perspective of a developer who is not rooted in Muslim customs. It also describes …

Enhancing Breast Cancer Detection In Mammographic Imaging Using Explainable Clinical Decision Support System And Framework, Ahed Abugabah, Prashant Kumar Shukla, Piyush Kumar Shukla, Abhishek Dwivedi

All Works

Breast cancer remains one of the leading causes of mortality among women worldwide, where early and precise detection plays a vital role in improving survival rates and treatment outcomes. However, conventional deep learning approaches often encounter challenges in handling dense mammographic tissues and lack transparency in decision-making, limiting their clinical reliability. To address these limitations, this study introduces TransYOLO-GJO, an explainable and optimized detection framework that integrates transformer-based attention mechanisms into the YOLOv9 architecture and leverages the Golden Jackal Optimization (GJO) algorithm for hyperparameter tuning. The transformer encoder enhances contextual feature extraction, particularly in dense breast regions, while GJO dynamically …

Model For Calculating Impact Force For Individualized Hip Fracture Prediction During A Fall, Alisha Agarwal, Daniel Kargilis, Nishtha Gupta, Michael Chang, Rui Feng, Gregory Chang, Chamith S. Rajapakse

Student Papers, Posters & Projects

Osteoporotic-related weakening of bone is a common cause of hip fractures. The standard of care for the diagnosis and management of osteoporosis is the dual-energy x-ray absorptiometry bone mineral density T-scores. Many individuals considered nonosteoporotic, however, still sustain fractures since these tools do not incorporate vital bone parameters and subject-specific characteristics. The purpose of this work was to (1) develop a simple analytical model for estimating the force exerted on the femur during a fall (i.e., impact force) based on measurable patient metrics and (2) define a quantifiable fracture risk index by comparing finite-element-derived bone strength and impact force, which …

A Predictive Model For Multi- Week Respiratory Risk From Red Tide On Florida’S Gulf Coast., Elmer S. Ochaeta

Computer Science and Engineering Faculty Publications

Florida’s Gulf Coast red tide (Karenia brevis) can put toxins into the air, making people cough, irritating the throat, and worsening asthma or other breathing problems especially when winds blow from the ocean toward the beach. Right now, most public updates don’t really help with the question people actually ask when planning a weekend or vacation: “Will going to or close to the beach be risky in the next few weeks?”.

In this project, I build a weekly early warning system that estimates respiratory risk for specific beaches and predicts that risk 2 to 4 weeks ahead. The study covers …

The Heterogeneity Of Healthcare And Insurance In The Midwest, William Robb

Honors Theses

Background 
Healthcare varies in each state from labor and capital to the laws governing the state and the finances they run under. United States citizens have criticized healthcare and call for change as the United States lacks a universal healthcare system. Even with a universal healthcare system, there are systematic issues and a financial downturn that need to be addressed even if it were to be adopted. Half of the counties in the U.S. see a shortage in labor and hospitals leading to a desert for both cases. Funding through the government is unstable and lacks clear and meaningful payments …

Establishing Convergence Thresholds For Pre-Trajectory Sampling With Batched Execution Across Random Quantum Circuits, Taylor L. Eskew, Jerome F. Gonthier, Taylor L. Patti, Andrew N. Jordan

Student Scholar Symposium Abstracts and Posters

A crucial aspect of validating quantum protocols is understanding the noise produced by quantum computing devices. Using simulations that can replicate this noise allows for a lower-cost alternative to hardware experiments. Stochastic, so-called "trajectory" methods are often used as a quadratically reduced approximation to density matrix simulations, but traditional implementations have limited sampling capacity and provide no error-based metadata. The Pre-Trajectory Sampling with Batched Execution (PTSBE) [Patti et al., 2025] algorithm provides a solution by combining fine-tuned, well-documented noise sampling with computational intermediate caching.

While the original work is effective on quantum error correction circuits, its performance on general circuits …

Facility Usage On The International Space Station, Justin St. P. Walsh, Rao Hamza Ali, Ryan Shihabi, Erik Linstead

Art Faculty Articles and Research

Science experiments on the International Space Station (ISS) and in future space habitats require “facilities,” as they are known to space agencies, as the core building blocks of the research capabilities they provide. Facilities are experimental apparatus that enable research, often (but not always) used for more than one experiment, such as centrifuges, furnaces, gloveboxes, freezers, and more. The US Orbital Segment of the ISS has been home to 191 such facilities, belonging to four of the five ISS international partner agencies as well as private companies, in its 25 years of continuous operation. Until now, there has been no …

Evaluating How New York City’S Recycling And Organic Waste Systems Reduce Resource Waste And Methane Emissions, Zihan Cao

Publications and Research

This study analyzes New York City’s waste management systems, with a focus on food waste diversion, composting, and renewable energy initiatives, to assess their role in methane emission reduction and resource efficiency. The analysis highlights the relative effectiveness of different waste management pathways and suggests that community-scale composting and decentralized anaerobic digestion are associated with substantial methane reductions relative to cost.

Developing A Waste-To-Energy Assessment Framework Integrating Engineering And Policy Dimensions Using A Triple Bottom Line Approach, Izech Brian O. Edwin, King Harold A. Recto

Electronics, Computer, and Communications Engineering Faculty Publications

The management of municipal solid waste (MSW) in swiftly urbanizing Philippine cities has emerged as a critical concern in both energy and governance. Dependence on landfills is approaching critical thresholds as disposal sites near saturation, transportation costs escalate, and host communities increasingly resist garbage transfers. In response, this study proposes a comprehensive Waste-to-Energy (WtE) assessment framework that integrates engineering evaluation with policy and stakeholder analysis to support sustainable decision- making.

Using Baguio City as a case study, the framework applies a Triple Bottom Line (TBL) approach to evaluate three waste management scenarios: (1) current landfill-dominated practices, (2) engineered landfill with …

The Study Of Hybrid Nanostructures For Optoelectronics, Alex Davis, Khaoula Dehhou

Publications and Research

Hybrid nanostructures that combine zero-dimensional (0D) quantum dots (QDs) with two-dimensional (2D) transition-metal dichalcogenides (TMDs) are promising building blocks for next-generation optoelectronic devices, such as highly sensitive photodetectors, light-emitting diodes, and tunable light sources. These hybrid systems take advantage of the strong, size-dependent emission of colloidal QDs and the high carrier mobility and tunable band structure of 2D materials. In this research, we investigate hybrid structures composed of colloidal CdSe/ZnS, CuInS/ZnS, and PbS QDs integrated with indium selenide (InSe), a TMD known for its exceptional electron mobility and robust photoluminescence in few-layer form. The goal is to understand how interfacial …

2025 December 4 - Tennessee Weekly Drought Summary, Tennessee Climate Office, East Tennessee State University

Tennessee Climate Office Weekly Drought Summaries

No abstract provided.

Toward Understanding Multi-Agent Decision Making In Complex Societies, Jonathan Skaggs

Theses and Dissertations

This dissertation investigates Multi Agent Decision Making (MADM) within Complex Societies (CS), systems of interdependent agents whose collective behaviors emerge from local interactions. Such emergent dynamics are nonlinear and difficult to predict, posing significant challenges towards understanding how individual decisions scale to societal outcomes. Existing approaches often fall short of capturing the combined attributes of CS, including asymmetry, decentralization, and adaptivity. To address this gap, we introduce new models and analyses of agent strategies that explain how cooperation and stability can arise in CS. Structured around three interrelated projects, this dissertation enhances our comprehension of MADM in CS. The research …

Gamification Of A Bimanual Coordination Task, Robby Johnson, Caeden Kidd, Johnathan Oestringer, Jaylin Pigeon, Brandon Woolman

Infinite Loop

Video games are a promising future for research and development. A new way to measure motor skills is to use robots to test individuals. This technology is incredible and has helped the medical field, but there must be a way to allow individuals to use this technology in a similar and affordable manner. Space Trash is a game that was developed with the intent to gamify the object hit detection that is used in the Kin Arm Robot with the intent to see if a person will show signs of Alzheimer’s. The goal is to not only be able to …

A Proposed Study Of Tone Indicators In Sentimental Analysis And Emotion Detection, Andrea Llanas

Infinite Loop

Sentimental analysis and emotion detection have been an ever-growing field in academic literature in recent years [1,2,3]. There are many methods and techniques to distinguish positive and negative tokens as well as classification of emotions respectively. However, the use of tone indicators has been relatively underexplored within the field.

Tone indicators are a relatively recent trend in social media. Users denote a positive or negative connotation as well as an emotion in a sentence at the moment of conception with syntax such as “/s,” “/pos,” and “/neg.” These annotations often are context-free, or do not depend on previously declared information, …

Business Financial Information Systems, Lirie Koraqi, James Jolovski Prof.

International Journal of Business and Technology

An information system is a combination of software, hardware, and telecommunication networks to collect useful data, especially in an organisation. Many businesses use information technology to complete and manage their operations, interact with their consumers, and stay ahead of their competition. Some companies today are completely built on information technology.

Well designed and implemented business information systems should provide the information management and outside parties need to make informed and timely decisions about the operating health of the company. Business considers the need to have information available to assess the profitability of a new product they are selling or their …

Digital Transformation Management And Organizational Performance: The Case Of Albanian Healthcare Sector, Oltjan Hamza

International Journal of Business and Technology

Purpose - The integration of digital technologies into the healthcare system is essential for improving both operational efficiency and quality of services. This study examines the relationship between digital transformation management and organizational performance in the healthcare sector in Albania, with particular focus on the mediating role of leadership in digital transformation and the digital skills of the healthcare staff. Methodology - The study employ a quantitative method through a structured questionnaire using a Likert scale, which was distributed to 93 healthcare sector employees in public and private institutions in Albania. Findings - Data collected through the survey were analyzed …