Physical Sciences and Mathematics Commons^™

Feasibility, Acceptability, And Preliminary Efficacy Of A Pilot Study To Integrate Buprenorphine Into A Harm-Reduction Drop-In-Center In Kampala, Uganda, Julia Dickson-Gomez, Sergey Tarima, Wamala Twaibu, Dan Katende, Latifah Kyeswa, Laura Glasman, Arthur Kiconco, Sarah Krechel, Bryan Johnston, Moses Ogwal, Brian Byamah Mutamba, Peter Mudiope, Stella Alamo, Rhoda Wanyenze, Geofrey Musinguzi

Biostatistics Faculty Publications

Illicit drug use has been increasing rapidly in Sub-Saharan Africa in the past decade. However, until recently HIV prevention has largely ignored people who inject drugs and medications to treat opioid use disorder (MOUD) were largely absent. This paper reports results of a pilot intervention that integrated buprenorphine into a harm-reduction drop-in-center for people with opioid use disorder (OUD) in Kampala, Uganda. We collected implementation outcomes and changes in self-reported drug use after buprenorphine initiation. We conducted qualitative interviews with a subset of 14 participants who had initiated buprenorphine. Sixty-two participants were screened for OUD, of whom 57 were eligible …

Artificial Intelligence In Biomedical Team Science: Perceptions, Practices, And Training Needs, Emily Slade, Kelsey N. Karnik, Caitline Phan, Megan E. Hall, Yana Feygin, Kristen J. Mcquerry

Biostatistics Faculty Publications

Introduction: Artificial intelligence (AI) is increasingly used in biomedical research, yet limited empirical work has described how researchers use AI tools on collaborative research teams and how they view their role within team-based research. This study examines researchers’ experience with and attitudes toward AI use in collaborative research environments.

Methods: A cross-sectional survey was administered to 178 investigators engaged in collaborative research at the University of Kentucky. Questions assessed AI use across research and communication tasks, team-related decision-making practices, perceived benefits and concerns, and preferences for training and frameworks.

Results: Thirty-nine participants responded (22%). AI use was heterogeneous: 26% had …

Aquatic Invasive Species Survey And Treatment On Lake Umatilla And Lake Celilo 2024-2025 Report, Jacob Rose, Gabriel E. Campbell

Center for Lakes and Reservoirs Publications and Presentations

Flowering Rush (Butomus umbellatus) is an invasive aquatic plant in the Pacific Northwest that threatens salmon habitat. The Center for Lakes and Reservoirs staff surveyed for this and other aquatic species from 2024 and 2025 in the Columbia River in Lake Umatilla and Lake Celilo. This document summarizes their survey efforts including their protocols, data, and small-scale removal efforts.

Biochemical Investigations Of F420-Dependent Glucose-6-Phosphate Dehydrogenase From Cryptosporangium Arvum, Sarah T. Al-Noubani

2026 Spring Honors Capstones Projects

F₄₂₀-dependent glucose-6-phosphate dehydrogenase (FGD) catalyzes the conversion of glucose-6-phosphate to 6-phosphogluconolactone using the deazaflavin, Cofactor F₄₂₀. FGD from Mycobacterium tuberculosis has been investigated due to its health relevance to prodrug activation. More recently, FGD from Cryptosporangium arvum (Cryar- FGD) has been investigated due to its broader substrate specificity toward multiple sugar phosphates. Kinetic and NMR studies have shown that Cryar-FGD has dual catalytic activity as a dehydrogenase and isomerase. Further investigations are being conducted on Cryar-FGD to characterize key residues involved in catalysis.

To investigate the catalytically active residues of Cryar-FGD, …

Bursty Bulk Flows: The What, The Why, And Their Impacts On The Earth, Fariza Tanvir

2026 Spring Honors Capstones Projects

Due to solar wind-magnetosphere interactions, the Earth's magnetic field lines stretch into a long, comet-shaped magnetotail, which extends thousands of miles away from the Earth. Bursty Bulk Flows (BBFs) are transient, high-speed ion bulk flows in the magnetotail that play an essential role in energy and mass transport. Characterized by their short-lived duration, they are related to magnetic reconnection events. This investigation focuses on being able to identify BBFs using the Magnetospheric Multiscale (MMS) probes, a mission consisting of four probes arranged in a tetrahedron to study the Earth’s magnetosphere. We examine parameters such as energy spectra, spin bulk velocity, …

Relationships Between Benthic Macroinvertebrate Communities And Environmental Conditions In Headwater Tributaries Of The Pend Oreille Lake Watershed, Idaho, Devlin Mee

EWU Masters Thesis Collection

Benthic macroinvertebrates are widely used indicators of stream condition, and their communities respond to thermal and land-use conditions in headwater streams. This study characterized macroinvertebrate biomass, community composition, and diversity across forested headwater tributaries of the Pend Oreille lake watershed in northern Idaho, and examined their relationships with summer temperature, land development, and road proximity. Samples from thirteen streams collected in 2024 were identified to genus, measured, and converted to estimated biomass using published length–mass regressions; ten streams had recovered temperature loggers. Because environmental variables were characterized once per stream, all analyses were conducted at the stream level.

Estimated total …

Handwriting Recognition In Vr, Dominique Mosley

EWU Masters Thesis Collection

Virtual Reality (VR) is slowly becoming more popular for more than just entertainment. VR can be found in educational, office, and even healthcare settings to help discover more intuitive ways to teach, collaborate, and treat patients. Outside of the virtual world, these environments typically rely on writing for communicating or note-taking. Currently, VR input forces users to rely on clunky on-screen keyboards which disrupts the user’s immersion and breaks the flow of natural interaction. This thesis explores the potential of VR as a learning platform by combining it with artificial intelligence (AI). It aims to develop a VR-enhanced handwriting practicing …

An Empirical Framework For Evaluating Semantic Preservation Using Hugging Face, Nan Jia, Anita Raja, Raffi Khatchadourian

Publications and Research

As machine learning (ML) becomes an integral part of high-autonomy systems, it is critical to ensure the trustworthiness of learning-enabled software systems (LESS). Yet, the nondeterministic and run-time-defined semantics of ML complicate traditional software refactoring. We define semantic preservation in LESS as the property that optimizations of intelligent components do not alter the system's overall functional behavior. This paper introduces an empirical framework to evaluate semantic preservation in LESS by mining model evolution data from HuggingFace. We extract commit histories, $\textit{Model Cards}$, and performance metrics from a large number of models. To establish baselines, we conducted case studies in three …

Color-Blind Resilience: How Uniform Climate Standards Reproduce Environmental Inequality In The Rockaways, Aaryan M. Nair

Publications and Research

This paper examines how ostensibly uniform climate resilience standards can reproduce environmental inequality in socially uneven landscapes, using the Rockaway Peninsula in New York City as a critical case study. While flood-resistant building codes, zoning regulations, and insurance frameworks are designed to provide equal protection across flood-prone areas, this analysis argues that their “color-blind” application obscures and intensifies underlying disparities in financial capacity, housing conditions, and tenure. Drawing on environmental justice (EJ) theory, the paper identifies two key mechanisms through which inequality is reproduced. First, “code without capacity” demonstrates how uniform technical standards—such as elevation requirements under NYC Building Code …

Resilience For Whom? A Study In Pathways And Production Of Unequal Risk In The Rockaways, Aaryan M. Nair

Publications and Research

This paper investigates how climate adaptation policies in the Rockaway Peninsula of New York City produce unequal outcomes despite their ostensibly neutral design, framing resilience as an environmental and climate justice problem. Situated within a landscape marked by stark socioeconomic disparities, aging housing stock, and high exposure to coastal flooding, the study demonstrates that existing adaptation strategies—centered on uniform technical standards, insurance frameworks, and large-scale coastal infrastructure—systematically advantage actors with greater financial and institutional capacity while leaving low-income residents, particularly renters, disproportionately vulnerable.

The analysis identifies three core dynamics underlying this “unequal-by-design” resilience regime: (1) the stratified feasibility of compliance …

Water Resource Protection Principles And Strategies, Julia Peterson

UNH Cooperative Extension

No abstract provided.

Learning-Based Graph Shrinking For Quantum Optimization Of Constrained Combinatorial Problems, Monit Sharma, Hoong Chuin Lau

Research Collection School Of Computing and Information Systems

Graph shrinking has recently emerged as a powerful preprocessing technique for hybrid classical–quantum optimization, enabling variable and constraint reduction before quantum solving. Conventional approaches rely on Semi-Definite Programming (SDP) relaxations to compute vertex correlations, but these methods suffer from high computational overhead, instance-specific tuning, and limited generalizability. In this work, we replace the handcrafted SDP correlation stage with a reinforcement learning (RL) based correlation estimator, trained to predict merge quality directly from graph structure. We reformulate the graph shrinking process as a Markov Decision Process (MDP), design a Graph Neural Network (GNN) policy to guide vertex merging, and integrate the …

Geovig And Purevig: Geometry-Aware Architectures For Efficient Computer Vision, Omar Ismail

Theses and Dissertations (Comprehensive)

Deploying deep learning models for medical image analysis on mobile devices requires a balance between inference latency, memory footprint, and delineating anatomical boundaries with high accuracy. While Convolutional Neural Networks (CNNs) and mobile Vision Transformers (ViTs) offer efficiency, they often struggle to model the irregular, non-local geometric structures inherent in biological tissues without incurring prohibitive computational costs. In this thesis, we introduce GeoViG (Geometric Vision Graph), an architecture that bridges the gap between efficient grid-based processing and explicit Geometric Deep Learning. GeoViG introduces a novel transition from high-resolution pixel grids to low-resolution dynamic graphs via a SpreadEdgePool operator, a geometry-aware …

Assessing Dissolved Organic Matter Sources And Dynamics In Urban Stormwater: Implications For Greenhouse Gases, Harper W. Schmalz

Theses and Dissertations (Comprehensive)

Stormwater management ponds (SWMPs) are important aspects of land-use planning and increasingly recognized as active sites of biogeochemical processing that influence carbon cycling; however, little research has investigated the controls on dissolved organic and dissolved inorganic carbon (DOC and DIC) within these systems. This thesis examined the processing and transformations of dissolved carbon between three compartments to support the development of a greenhouse gas (GHG) box-model for urban stormwater ponds, including SWMP sediment, surface water, and vegetation. The objective of this thesis was to assess the biogeochemical processes that govern the rate and transformation of DOC and DIC between these …

Do Comments And Expertise Still Matter? An Experiment On Programmers’ Adoption Of Ai-Generated Javascript Code, Changwen Li, Christoph Treude, Ofir Turel

Research Collection School Of Computing and Information Systems

This paper investigates the factors influencing programmers’ adoption of AI-generated JavaScript code recommendations within the context of lightweight, function-level programming tasks. It extends prior research by (1) utilizing objective (as opposed to the typically self-reported) measurements for programmers’ adoption of AI-generated code and (2) examining whether AI-generated comments added to code recommendations and development expertise drive AI-generated code adoption. We tested these potential drivers in an online experiment with 173 programmers. Participants were asked to answer some questions to demonstrate their level of development expertise. Then, they were asked to solve a LeetCode problem without AI support. After attempting to …

Leveraging Large Language Models For Career Mobility Analysis: A Study Of Gender, Race, And Job Change Using Us Online Resume Profiles, Palakorn Achananuparp, Ye Xu, Yao Lu, Xavier Jayaraj Siddarth Ashok, Ee-Peng Lim

Research Collection School Of Computing and Information Systems

We present a large-scale analysis of career mobility of college-educated U.S. workers using online resume profiles to investigate how gender, race, and job change options are associated with upward mobility. This study addresses key research questions of how the job changes affect their upward career mobility, and how the outcomes of upward career mobility differ by gender and race. We address data challenges – such as missing demographic attributes, missing wage data, and noisy occupation labels – through various data processing and Artificial Intelligence (AI) methods. In particular, we develop a large language models (LLMs) based occupation classification method known …

Constrained Reinforcement Learning: From Single-Agent Safety To Multi-Agent Coordination, Hao Jiang

Dissertations and Theses Collection (Open Access)

Real-world decision-making systems such as autonomous driving and largescale ride-pooling must operate under strict safety and resource constraints. Traditional Reinforcement Learning (RL) methods, while powerful in simulation, often fail to guarantee such constraints, limiting their real-world deployment. The fundamental challenge lies in integrating constraint satisfaction with long-term reward optimization, especially when outcomes are stochastic and interdependent across multiple agents.

This dissertation advances the field of Constrained Reinforcement Learning (CRL) from both single-agent safety and multi-agent coordination perspectives. In the single-agent setting, we introduce a Reward Penalty framework that augments the state space with cumulative cost and penalizes only trajectories that …

Visual Analytics For Interpretable Quantum Computing, Shaolun Ruan

Dissertations and Theses Collection (Open Access)

Quantum computing has entered a stage of increasing practicality. Many quantum hardware vendors such as IBM, Rigetti, Honeywell, and IonQ now enable experiments on real devices in the Noisy Intermediate-Scale Quantum (NISQ) era. These platforms show computational advantages in domains such as optimization, machine learning, and materials science. However, they remain limited by hardware noise and the absence of human-interpretable information. Existing visual metaphors, such as the Bloch Sphere for single-qubit states or circuit schematics for algorithm design, struggle to convey multi-qubit entanglement or measurement probabilities in ways accessible to human reasoning. Likewise, the rise of variational quantum circuits and …

Inside Out: Improving Large Model Safety, Wei Zhao

Dissertations and Theses Collection (Open Access)

While Large Language Models (LLMs) and Multimodal Large Language Models (MLLMs) are at the frontier of current advancements in artificial intelligence, demonstrating remarkable capabilities across diverse applications, there are growing concerns about their reliability and security. LLMs remain vulnerable to adversarial attacks through carefully crafted prompts that circumvent safety mechanisms, while MLLMs face additional security challenges stemming from their multimodal nature. Despite considerable efforts in reinforcement learning from human feedback (RLHF) and supervised fine-tuning, existing safeguards have proven inadequate in addressing these critical vulnerabilities. This inadequacy stems from the fact that these models are inherently blackboxes that do not provide …

Western Massasauga (Sistrurus Tergeminus): A Species Conservation Assessment For The Nebraska Natural Legacy Project, Colleen Rothe-Groleau, Melissa J. Panella

Nebraska Game and Parks Commission: Publications

The Nebraska Natural Legacy Project recognizes the western massasauga (Sistrurus tergeminus) as a Tier I at-risk species. Provided are some general management recommendations regarding western massasaugas. Conservation practitioners will need to use professional judgment to make specific management decisions based on objectives, location, and a multitude of variables. This resource was designed to share available knowledge of this at-risk species that will aid in the decision-making process or in identifying research needs to benefit the species.

Criteria for selection as Tier I: State listed, G3

Estimated Population in NE: 1,000–2,500

Estimate based on: Field surveys

Trends since 2005 …

Modular Synthesis Of Conjugated Aromatic Systems Via Palladium-Catalyzed Cross-Coupling Reactions, Joden Russell Robinson

Dissertations, Master's Theses and Master's Reports

This thesis describes the development of a modular synthetic route to extended conjugated aromatic systems through iterative palladium-catalyzed Sonogashira crosscoupling reactions. The work was motivated by the challenge of preparing a discrete conjugated molecule in a controlled manner. The synthetic strategy used complementary protected alkyne functionalities that could be selectively activated. This enabled sequential deprotection and coupling reactions to predictably extend the molecular scaffold. Using this approach, a series of conjugated intermediates was prepared and exponentially extended. Spectroscopic characterization by NMR and mass spectrometry supported the structures of the isolated products and the success of the iterative elongation strategy. Overall, …

Characterizing Cyber Intrusions In Critical Infrastructure Networks Using Discrete-Event Simulation, Lawrence M. Dilworth

Dissertations, Master's Theses and Master's Reports

Over the past two decades, cybersecurity compliance frameworks such as the North American Electric Reliability Corporation Critical Infrastructure Protection (CIP) have introduced prescriptive measures for protecting power system networks, emphasizing restricted access, segmentation, and minimizing routable exposure. While effective for baseline cyber hygiene, these approaches do not capture system-level risks or adversarial propagation across interconnected infrastructure. In contrast, Cyber-Informed Engineering (CIE), advanced by Idaho National Laboratory, embeds security in system design by considering threat vectors and physical constraints.

Despite CIP guidance, many deployments rely on IP-routable, bidirectional communication that enables handshaking, allowing adversaries to infer reachable targets. This work presents …

The Excess Path Length Distribution: A Stochastic Model For Sample-Based Path Planners, Chaz B. Cornwall

Dissertations, Master's Theses and Master's Reports

Through random sampling, sample-based path planners enable autonomous agents to quickly find paths without human intervention. However, due to the paths' randomness, sample-based path planners currently require additional verification, partially nullifying agents' ability to act autonomously. I set out to characterize this uncertainty so humans know what to expect from these path planners and know how to alter the path planner to desired specifications. To ensure the results are theoretical as well as practical, I first create a stochastic model of path length uncertainty using the trade-off between sampling time and optimality. By leveraging this model, my proposed algorithm reduces …

Microgravity-Induced Alterations In Left Atrial Hemodynamics And Thrombogenic Risk: Insights From Healthy And Atrial Fibrillation Models, Grace M. Hoeppner

Dissertations, Master's Theses and Master's Reports

Background: Microgravity exposure alters cardiovascular loading, yet its impact on left atrial flow dynamics and thrombotic risk remains poorly understood. This study investigates how spaceflight-relevant microgravity-induced changes in cardiac outflow affect left atrial hemodynamics in healthy individuals and patients with atrial fibrillation.

Methods: Patient-specific left atrial models were generated for three healthy individuals and three AF patients. Computational fluid dynamics (CFD) simulations were performed using each patient’s baseline mitral outflow waveform and two modified waveforms representing short- and long-duration post-flight cardiac loading changes derived from echocardiographic observations. Hemodynamic metrics included left atrial velocity, time averaged wall shear stress, oscillatory shear …

Computational And Ai Frameworks For Identifying Key Regulatory Genes And Their Target Genes In Plants And Humans, Md Khairul Islam

Dissertations, Master's Theses and Master's Reports

This dissertation presents computational and AI-driven frameworks for identifying key regulatory genes and their downstream targets across plant and human biological systems. Three studies address distinct challenges in genomic regulation using advanced machine learning and bioinformatics approaches.

The first study introduces DyGAF (Dynamic Gene Attention Focus), a dual-attention transformer framework that identifies and ranks disease-relevant biomarker genes by simultaneously modeling independent molecular responses and interdependent regulatory network behavior. Two attention models provide complementary perspectives on gene importance and are fused through a novel combination metric. Applied to COVID-19 nasopharyngeal swab profiles, the attention-weighted representations achieved 94.23% classification accuracy, high sensitivity, …

Designing A Research Study: Controlling For A Variable And Using Chatgpt, Fritz Umbach

Open Educational Resources

This assignment uses a hypothetical society to help students understand the idea of “controlling for a variable” and practice applying it to a real-world research question. Students design a research approach to examine whether income differences are better explained by family background or by systemic prejudice, working within clear data limits. ChatGPT is used as a research guide to help students brainstorm, test, and revise their methods, while encouraging them to critically evaluate the usefulness and limits of AI-generated suggestions. The assignment emphasizes careful reasoning, clear research design, and thoughtful use of AI as a support for learning rather than …

Ma 250 – Evaluating & Creating With Genai, Mohamed Ben Zid

Open Educational Resources

In this assignment, students use Excel and ChatGPT to design, analyze, and interpret a regression model. They create visualizations, calculate the regression equation manually, and make predictions before consulting AI-generated feedback on their model’s strengths and limitations. Students then compare their own interpretation with ChatGPT’s insights, summarize their findings, and critically assess the model’s accuracy and real-world usefulness. The exercise develops quantitative reasoning, practical AI application, and reflective evaluation skills.

Af-Xray: Visual Explanation And Resolution Of Ambiguity In Legal Argumentation Frameworks, Yilin Xia, Heng Zheng, Shaun Bowers, Bertram Ludäscher

Computer Science Faculty Scholarship

Argumentation frameworks (AFs) provide formal approaches for legal reasoning, but identifying sources of ambiguity and explaining argument acceptance remains challenging for non-experts. We present AF-XRAY, an open-source toolkit for exploring, analyzing, and visualizing abstract AFs in legal reasoning. AF-XRAY introduces: (i) layered visualizations based on game-theoretic argument length revealing well-founded derivation structures; (ii) classification of attack edges by semantic roles (primary, secondary, blunders); (iii) overlay visualizations of alternative 2-valued solutions on ambiguous 3-valued grounded semantics; and (iv) identification of critical attack sets whose suspension resolves undecided arguments. Through systematic generation of critical attack sets, AF-XRAY transforms ambiguous scenarios into grounded …

Typology And Spatiotemporal Patterns Of Illegal Fishing Activities In The Philippines: Implications For Fisheries Management, Marlowe O. Acevedo, Tzu-Yun Ching, Chih-Shin Chen

Journal of Marine Science and Technology–Taiwan

Illegal, unreported, and unregulated (IUU) fishing activity is a global threat and continues to undermine the effectiveness of fisheries regulations and management measures. However, the extent of illegal fishing in Philippine waters remains unclear. This study aims to identify the types of illegal fishing in Philippine waters and analyzed their temporal and spatial patterns. Data were obtained from the records of the Philippine Coast Guards (PCG) and Maritime Law Enforcement Agencies from 2015 to 2020. A total of 602 apprehensions were recorded, resulting in 813 violations, of which 630 cases were fishery violations. Most of the watercrafts involved in the …

Soft-Constrained Variants Of T-Distributed Stochastic Neighbor Embedding For Global Structure Preservation, Joseph A. Balderas

Mathematics Dissertations

Dimensionality reduction (DR) is a fundamental tool in data science and machine learning that transforms high-dimensional data into a low-dimensional representation while preserving important structural properties of the original data. Among modern DR methods, t-distributed stochastic neighbor embedding (t-SNE) has become one of the most widely used techniques for visualization due to its strong ability to preserve local neighborhood structure and produce visually separated clusters. However, despite its popularity, t-SNE is well known to struggle with preserving global structure of data, often producing embeddings in which distances between clusters and neighborhoods do not accurately reflect relationships in the high-dimensional space. …