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Articles 6841 - 6870 of 291657

Full-Text Articles in Physical Sciences and Mathematics

Untrained Position-Encoded Multilayer Perceptron Network For Structured Illumination Microscopy Reconstruction, Sahil Sharma, Leonidas Zimianitis, Krishnendu Samanta, Balpreet Singh Ahluwalia, Joby Joseph, Dushan N. Wadduwage Jan 2026

Untrained Position-Encoded Multilayer Perceptron Network For Structured Illumination Microscopy Reconstruction, Sahil Sharma, Leonidas Zimianitis, Krishnendu Samanta, Balpreet Singh Ahluwalia, Joby Joseph, Dushan N. Wadduwage

Computer Science Faculty Publications

Structured Illumination Microscopy (SIM) enables super-resolution imaging by encoding high-frequency spatial information through patterned light. While traditional Fourier-based reconstruction methods are prone to artifacts under suboptimal conditions, recent deep learning approaches often require large training datasets and lack adaptability across different imaging setups. In this work, we present Position Encoded Multi-Layer Perceptron (PEM) network that leverages implicit neural representations (INRs) and SIM forward-model-driven modeling to reconstruct super-resolved images without any training data. PEM-SIM represents each spatial coordinate as a combination of sinusoidal functions across multiple frequencies, enabling rich encoding of fine spatial detail. A forward model grounded in SIM image …

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Near Real-Time Adaptive Isotropic And Anisotropic Image-To-Mesh Conversion For Cerebral Aneurysm Simulations, Kevin Garner, Chander Sadasivan, Nikos Chrisochoides Jan 2026

Near Real-Time Adaptive Isotropic And Anisotropic Image-To-Mesh Conversion For Cerebral Aneurysm Simulations, Kevin Garner, Chander Sadasivan, Nikos Chrisochoides

Computer Science Faculty Publications

This paper presents two performance optimization techniques for a mesh adaptation method that is designed to help streamline the discretization of complex vascular geometries within the numerical modeling process. This method is integrated into a pipeline with an image-to-mesh conversion tool to generate adaptive anisotropic meshes from segmented medical images. The pipeline is shown to satisfy quality, fidelity, smoothness, and robustness requirements while providing near real-time performance for medical image-to-mesh conversion. Tested with two brain aneurysm cases and utilizing up to 96 CPU cores within a single, multicore node on Purdue University’s Anvil supercomputer, the parallel adaptive anisotropic meshing method …

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Sage: Spatially Aware Gene Selection And Dual-View Embedding Fusion For Domain Identification In Spatial Transcriptomics, Yi He, Yunpei Xu, Liqing Ding, Hong-Dong Li, Yaohang Li, Shaokai Wang Jan 2026

Sage: Spatially Aware Gene Selection And Dual-View Embedding Fusion For Domain Identification In Spatial Transcriptomics, Yi He, Yunpei Xu, Liqing Ding, Hong-Dong Li, Yaohang Li, Shaokai Wang

Computer Science Faculty Publications

Despite enabling high-resolution mapping of gene expression within tissues, spatial transcriptomics (ST) still faces challenges in accurately segmenting spatial domains due to complex tissue architecture and limitations of current methods. Most approaches rely on local spatial priors, lack gene-level interpretability, and fall short in capturing structure-discriminative genes or long-range functional relationships, limiting their ability to resolve biologically meaningful architectures. We present Spatially Aware Gene selection and dual-view Embedding fusion (SAGE), a unified and reproducible framework for domain identification in spatial transcriptomics that combines topic-driven gene selection with dual-view embedding fusion to address these gaps. SAGE integrates non-negative matrix factorization (NMF)-based …

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Design And Analysis Of Modern Quantum Neural Network Architectures For Intelligent Systems, Lakshmi Chandrakanth Kasireddy, Prabhakara Rao Kapula, Dineshkumar Rajendran, Neha Bharani, Srikanth Pulipeti, Islombek Khushvaktov Jan 2026

Design And Analysis Of Modern Quantum Neural Network Architectures For Intelligent Systems, Lakshmi Chandrakanth Kasireddy, Prabhakara Rao Kapula, Dineshkumar Rajendran, Neha Bharani, Srikanth Pulipeti, Islombek Khushvaktov

Computer Science Faculty Publications

Quantum neural networks (QNNs) offer a principled pathway for integrating quantum computation with machine learning through superposition- and entanglement-based representations. This chapter proposes an architecture-aware design and evaluation framework for modern QNNs, emphasizing robustness and system feasibility alongside predictive performance. Multiple architectures variational QNNs, quantum convolutional neural networks, tensor-network hybrids, and fully quantum models—are assessed under a unified protocol. Experimental analysis shows that the proposed architecture-search–guided QNN achieves 91.8% classification accuracy and an F1-score of 0.914, outperforming fixed-template variational QNNs by approximately 5.6 percentage points. Under depolarizing noise with probability p = 0.10, the proposed model retains 85.3% accuracy, whereas …

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Integration Of Hybrid Quantum-Neuromorphic Ai With Cloud, Edge, And High-Performance Computing Environments, Arun B. Prasad, Ajay Prasad, Dineshkumar Rajendran, Anurag Tiwari, T. Akilan, Islombek Khushvaktov Jan 2026

Integration Of Hybrid Quantum-Neuromorphic Ai With Cloud, Edge, And High-Performance Computing Environments, Arun B. Prasad, Ajay Prasad, Dineshkumar Rajendran, Anurag Tiwari, T. Akilan, Islombek Khushvaktov

Computer Science Faculty Publications

The convergence of quantum computing, neuromorphic learning, and distributed cloud infrastructures has occurred very rapidly, and intelligent systems are now providing new opportunities, but the challenge of instability, complexity of orchestration, and noise sensitivity remains in the way of practical integration. The proposed work is based on a hybrid quantum and neuromorphic architecture, which is the integration of event-based neuromorphic adaptation and quantum-assisted global optimization, orchestrated by cloud-HPC. The architecture presents the thermodynamically regularized learning and resourceful task scheduling to the probabilistic search and the continuous local adaptation. Experimental evaluation across financial modeling, medical imaging, and physical system prediction shows …

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Cognitive Prosthetic: An Ai-Enabled Multimodal System For Episodic Recall In Knowledge Work, Lawrence Obiuwevwi, Krzystof J. Rechowicz, Vikas Ashok, Sachin Shetty, Sampath Jayarathna Jan 2026

Cognitive Prosthetic: An Ai-Enabled Multimodal System For Episodic Recall In Knowledge Work, Lawrence Obiuwevwi, Krzystof J. Rechowicz, Vikas Ashok, Sachin Shetty, Sampath Jayarathna

Computer Science Faculty Publications

Modern knowledge workplaces increasingly strain human episodic memory as individuals navigate fragmented attention, overlapping meetings, and multimodal information streams. Existing workplace tools provide partial support through note-taking or analytics but rarely integrate cognitive, physiological, and attentional context into retrievable memory representations. This paper presents the Cognitive Prosthetic Multimodal System (CPMS)—an AI-enabled proof-of-concept designed to support episodic recall in knowledge work through structured episodic capture and natural language retrieval. CPMS synchronizes speech transcripts, physiological signals, and gaze behavior into temporally aligned, JSON-based episodic records processed locally for privacy. Beyond data logging, the system includes a web-based retrieval interface that allows users …

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Contextual Scaffolding And Self-Efficacy: Supporting Computer Skill Development Among Blind Learners In India, Akshay Kolgar Nayak, Yash Prakash, Sampath Jayarathna, Hae-Na Lee, Vikas Ashok Jan 2026

Contextual Scaffolding And Self-Efficacy: Supporting Computer Skill Development Among Blind Learners In India, Akshay Kolgar Nayak, Yash Prakash, Sampath Jayarathna, Hae-Na Lee, Vikas Ashok

Computer Science Faculty Publications

Inclusive computer literacy education efforts, broadening the participation of blind or visually impaired (BVI) individuals, have gained traction in recent years. Existing literature investigating these efforts primarily draws evidence from affluent Global North contexts, where accessibility resources and legal frameworks are relatively more mature. Little is known about the in-situ teaching and learning challenges faced by trainers and BVI students, respectively, in resource-constrained, multicultural Global South countries like India. To address this knowledge gap, we conducted a four-month contextual inquiry at two computer training centers catering to 94 BVI students in India. We notably observed a rigid, experience-driven training environment …

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Voxvista: Enhancing Screen Reading Experience For Online User Comments, Yash Prakash, Akshay Kolgar Nayak, Mohammed Shoaib Alyaan, Sampath Jayarathna, Hae-Na Lee, Vikas Ashok Jan 2026

Voxvista: Enhancing Screen Reading Experience For Online User Comments, Yash Prakash, Akshay Kolgar Nayak, Mohammed Shoaib Alyaan, Sampath Jayarathna, Hae-Na Lee, Vikas Ashok

Computer Science Faculty Publications

Online discussions have become integral to how people exchange ideas, form opinions, and participate in collective deliberation. While sighted users can comfortably engage with online discussions, blind users who are dependent on screen readers are forced to listen to long threads narrated in a single, monotonic voice that lacks prosodic variation, rhythm, or emotion. This robotic auditory experience not only deteriorates the user engagement with the content but also increases cognitive strain, by making it difficult to remain attentive and discern meaning beyond literal words. In an interview study, most blind participants reported that monotonous narration hindered their ability to …

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Examining Inclusive Computing Education For Blind Students In India, Akshay Kolgar Nayak, Yash Prakash, Md Javedul Ferdous, Sampath Jayarathna, Hae-Na Lee, Vikas Ashok Jan 2026

Examining Inclusive Computing Education For Blind Students In India, Akshay Kolgar Nayak, Yash Prakash, Md Javedul Ferdous, Sampath Jayarathna, Hae-Na Lee, Vikas Ashok

Computer Science Faculty Publications

The growing demand for computer professionals, driven by the expanding Information Technology industry, has led to numerous inclusive computing education efforts. These efforts have even included blind or visually-impaired (BVI) students, who are being increasingly encouraged to pursue education and a career in computing, despite the visually-oriented nature of the discipline. Extant literature has predominantly focused on identifying and addressing the accessibility barriers faced by BVI students to promote more inclusive learning environments. While few studies have also investigated the accessibility of computing education from the perspectives of BVI learners and instructors, these have been primarily situated in the Global …

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Modeling Joint Visual Attention In Naturalistic Dyadic Interactions, Kuushini Thennakoon, Yasasi Abeysinghe, Bhanuka Mahanama, Vikas Ashok, Sampath Jayarathna Jan 2026

Modeling Joint Visual Attention In Naturalistic Dyadic Interactions, Kuushini Thennakoon, Yasasi Abeysinghe, Bhanuka Mahanama, Vikas Ashok, Sampath Jayarathna

Computer Science Faculty Publications

Joint visual attention (JVA) provides important insight into how individuals coordinate attention during social interaction. Egocentric eye tracking enables the study of JVA in natural, multi-user settings. This work presents a multi-stage framework to identify and analyze JVA using egocentric video and gaze data. The approach consists of three steps: spatiotemporal tube-based visual similarity, gaze-guided object detection, and attention pattern analysis using the ambient–focal coefficient K. Results show that object-focused collaborative activities exhibit high JVA, with object detection capturing higher joint attention than visual similarity, whereas conversation-based or independent activities show lower and more fragmented joint attention. Analysis of K …

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Stochastic Fractional-Order Memristive Fuzzy Bam Neural Networks With Time Delays And Leakage Term For Finite-Time Stability Analysis, J. Kumar, M. Syed Ali, Sumaya Sanober, Mohammad Yarish, Abeer M. Alotaibi, Tarek F. Ibrahim Jan 2026

Stochastic Fractional-Order Memristive Fuzzy Bam Neural Networks With Time Delays And Leakage Term For Finite-Time Stability Analysis, J. Kumar, M. Syed Ali, Sumaya Sanober, Mohammad Yarish, Abeer M. Alotaibi, Tarek F. Ibrahim

Computer Science Faculty Publications

In this study, a finite-time stability analysis with time delays and a leakage term is conducted on stochastic fractional-order memristive fuzzy BAM neural networks. FOMFBAMNNs are developed using set-valued map theories as well as differential inclusion. We obtained several significant adequate criteria of uniform stability in the mean square of such networks by using analytical methods and inequality approaches, such as Cauchy–Schwarz inequality and Burkholder–Davis–Gundy inequality. In addition to examining two different fractional-order derivatives between the U-layer and V-layer synchronously with fractional order, the existence, uniqueness, and stability of its equilibrium point are also shown ½ ≤ α ≤ 1. …

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The Privacy Paradox Of Llms: User Perceptions And The Reality Of Pii Leakage, Shuai Cheng, Haitao Xu, Shu Meng, Shuai Hao, Chuan Yue, Zhao Li Jan 2026

The Privacy Paradox Of Llms: User Perceptions And The Reality Of Pii Leakage, Shuai Cheng, Haitao Xu, Shu Meng, Shuai Hao, Chuan Yue, Zhao Li

Computer Science Faculty Publications

Large language models (LLMs) are increasingly deployed, yet they introduce significant privacy risks by disclosing personally identifiable information (PII) during interactions. Although prior work has demonstrated the feasibility of extracting PII from LLMs, no comprehensive study has evaluated the actual extent of PII leakage across mainstream LLMs or investigated user perceptions, literacy, and behavioral responses to these risks. To address these gaps, we conduct a large-scale evaluation of PII leakage in popular LLMs, demonstrating that attackers can extract email addresses and phone numbers with high success rates. Through a mixed-methods study involving 20 interviews and 204 survey participants, we identify …

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Exploring Marshall–Olkin Models Through Bibliometric And Topic Modeling Approaches Uses Latent Dirichlet Allocation (1981-2025): A Study Based On Scopus Data, Humberto Llinás, Brian Llinás, Carlos López, Daniela Nuñez Jan 2026

Exploring Marshall–Olkin Models Through Bibliometric And Topic Modeling Approaches Uses Latent Dirichlet Allocation (1981-2025): A Study Based On Scopus Data, Humberto Llinás, Brian Llinás, Carlos López, Daniela Nuñez

Computer Science Faculty Publications

The Marshall–Olkin family of distributions has gained increasing attention in fields such as reliability engineering, survival analysis, financial risk modeling, and actuarial science because of its flexibility in modeling dependence among events and its wide range of extensions. Despite its growing relevance, a systematic understanding of how research on Marshall–Olkin models has evolved over time is still limited. This study addresses this gap by combining bibliometric techniques with topic modeling to analyze the structure and evolution of the scientific literature on Marshall–Olkin models. The analysis includes all 266 peer-reviewed publications on Marshall–Olkin models indexed in Scopus between 1981 and 2025. …

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Towards Supporting Real-Time Estimation Of Vehicle Fuel Consumption And Co2 Emissions In Smart City Applications, Abrar Alali, Stephan Olariu Jan 2026

Towards Supporting Real-Time Estimation Of Vehicle Fuel Consumption And Co2 Emissions In Smart City Applications, Abrar Alali, Stephan Olariu

Computer Science Faculty Publications

This paper evaluates a simplified physics-based energy demand model designed to estimate vehicle fuel consumption and CO₂ emissions—a critical tool for sustainable transportation planning and smart city applications. Unlike data-driven regression models that lack generalizability for user-defined conditions or complex physics-based approaches that rely on extensive, often proprietary data, the simplified model is distinguished by its minimal parameter requirements, depending primarily on a single, overarching powertrain efficiency value. A key contribution is the comprehensive empirical evaluation of the simplified model against official Environmental Protection Agency (EPA) test data across multiple driving cycles and vehicle types, providing a rigorous validation previously …

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Maxgrnet: A Multi-Axis Vision Transformer With Improved Generalization For Eye Disease Classification Using Explainable Ai With Insertion-Deletion Operations On Fundus Images, Md Mehedi Hasan Santo, Fuyad Hasan Bhoyan, Fuad Ibne Jashim Farhad, Fahmid Al Farid, Sovon Chakraborty, Md Humaion Kabir Mehedi, Jia Uddin, Hezerul Bin Abdul Karim Jan 2026

Maxgrnet: A Multi-Axis Vision Transformer With Improved Generalization For Eye Disease Classification Using Explainable Ai With Insertion-Deletion Operations On Fundus Images, Md Mehedi Hasan Santo, Fuyad Hasan Bhoyan, Fuad Ibne Jashim Farhad, Fahmid Al Farid, Sovon Chakraborty, Md Humaion Kabir Mehedi, Jia Uddin, Hezerul Bin Abdul Karim

Computer Science Faculty Publications

Eye diseases, including diabetic retinopathy (DR), glaucoma, and cataracts, represent a major global health concern and can lead to severe visual impairment or blindness if not identified in a timely manner. This study proposes a novel eye disease classification framework based on a multi-axis vision transformer (MaxViT) applied to color fundus images with Explainable Artificial Intelligence (XAI) techniques to enhance model transparency. The proposed architecture integrates transformer-based attention mechanisms with Global Response Normalization (GRN)-based multi-layer perceptron (MLP) layers to capture complex spatial and contextual relationships within fundus images effectively. The model was evaluated on a publicly available eye disease classification …

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Exploring Large Language Models For Trustworthy Use: Insights From Research And Development, Sandeep Kalari, Sahithi Padidela, Vikas Ashok, Ravi Mukkamala Jan 2026

Exploring Large Language Models For Trustworthy Use: Insights From Research And Development, Sandeep Kalari, Sahithi Padidela, Vikas Ashok, Ravi Mukkamala

Computer Science Faculty Publications

Large Language Models (LLMs) are increasingly being adopted in a wide variety of domains, including sensitive domains such as healthcare and finance. However, persistent challenges such as unreliable data sources, privacy breaches, and hallucinated output continue to hinder their usage. We have experimented with several strategies to address these challenges. First, we developed BlockQwen, a blockchain-augmented framework that integrates decentralized trust validation, role-specific access control, and verifiable audit trails into the Qwen 2.5 LLM workflow. Second, we developed PrivAware, a multilayered privacy-enforcement framework, using a fine-tuned Flan-T5 model with self-attention masking, to safeguard data while maintaining high utility. Both systems …

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An Explainable Transformer Framework For Sentiment Analysis In Aviation Workforce Data, Sovon Chakraborty, Protiva Das, Fahmid Al Farid, Fuyad Hasan Bhoyan, Farig Yousuf Sadeque, Jia Uddin, Hezerul Abdul Karim Jan 2026

An Explainable Transformer Framework For Sentiment Analysis In Aviation Workforce Data, Sovon Chakraborty, Protiva Das, Fahmid Al Farid, Fuyad Hasan Bhoyan, Farig Yousuf Sadeque, Jia Uddin, Hezerul Abdul Karim

Computer Science Faculty Publications

Aviation is one of the predominant sectors that contribute significantly to the global economy. With the advent of technology, this industry is witnessing a paradigm shift towards data-driven approaches. The morale of the airline employees is barely noticed, which causes fatigue and depression. Furthermore, these mental health issues can be active reasons for destructive accidents. In this research, the authors are focused on collecting insightful information on aviation employees from Glassdoor.com. Moreover, the authors focus on analyzing the sentiments of the employees of renowned aviation companies. Primarily, the authors scraped necessary data from Glassdoor.com and created a dataset named JetJobJoy …

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Finding The Signal In The Noise: An Exploratory Study On Assessing The Effectiveness Of Ai And Accessibility Forums For Blind Users' Support Needs, Satwik Ram Kodandaram, Jiawei Zhou, Xiaojun Bi, Iv Ramakrishnan, Vikas Ashok Jan 2026

Finding The Signal In The Noise: An Exploratory Study On Assessing The Effectiveness Of Ai And Accessibility Forums For Blind Users' Support Needs, Satwik Ram Kodandaram, Jiawei Zhou, Xiaojun Bi, Iv Ramakrishnan, Vikas Ashok

Computer Science Faculty Publications

Accessibility forums and, more recently, generative AI tools have become vital resources for blind users seeking solutions to computer-interaction issues and learning about new assistive technologies, screen reader features, tutorials, and software updates. Understanding user experiences with these resources is essential for identifying and addressing persistent support gaps. Towards this, we interviewed 14 blind users who regularly engage with forums and GenAI tools. Findings revealed that forums often overwhelm users with multiple overlapping topics, redundant or irrelevant content, and fragmented responses that must be mentally pieced together, increasing cognitive load. GenAI tools, while offering more direct assistance, introduce new barriers …

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Privacy-Preserving Federated Learning With Optimized Ensemble Weighting And Knowledge Distillation For Covid-19 Detection From Non-Iid Medical Imaging Data, Richard Annan, Hong Qin, Robert Newman, Madhuri Siddula, Letu Qingge Jan 2026

Privacy-Preserving Federated Learning With Optimized Ensemble Weighting And Knowledge Distillation For Covid-19 Detection From Non-Iid Medical Imaging Data, Richard Annan, Hong Qin, Robert Newman, Madhuri Siddula, Letu Qingge

Computer Science Faculty Publications

Medical imaging enables rapid and accurate diagnosis of COVID-19, with CT scans proving especially effective. However, data privacy concerns limit collaborative model development across hospitals. To address this issue, we introduce a novel federated learning framework. It is referred to as Independent Knowledge Distillation with post-Ensemble Federated Learning (IKDEFL). Differential Privacy (DP) is integrated into the framework to improve privacy guarantees. Three DP mechanisms are evaluated. These include Fixed Gaussian, Gaussian Adaptive, and Tree Adaptive. The evaluation has been conducted on heterogeneous and Non-Independent and Identically Distributed (Non-IID) datasets. These datasets reflect real-world hospital scenarios. Results show that IKDEFL significantly …

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Biosecure-Llm Framework: Protecting Llms From Cyberbiosecurity Threats And The Case For Independent Ai Safety Governance, Xavier-Lewis Palmer, Lucas Potter, Srdjan Lesaja, Sotirios Karathanasis, Mohammad Ghasemigol Jan 2026

Biosecure-Llm Framework: Protecting Llms From Cyberbiosecurity Threats And The Case For Independent Ai Safety Governance, Xavier-Lewis Palmer, Lucas Potter, Srdjan Lesaja, Sotirios Karathanasis, Mohammad Ghasemigol

Computer Science Faculty Publications

Large Language Models (LLMs) are becoming critical infrastructure in scientific, healthcare, and governmental contexts. As frontier AI laboratories increasingly partner with government agencies, a fundamental question arises: Who should control the safety and policy-enforcement layers that constrain model behavior? Current safety mechanisms (LLM guardrails) are typically designed for generic "harmlessness" and operate by detecting semantic patterns and refusing requests. However, they are inadequate governance instruments because they cannot implement auditable, domain-specific controls tied to external regulatory policy objects (e.g., control lists or rules governing personally identifying information). Even a perfectly aligned model is not able to express institution-specific policy without …

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Lost In Instructions: Study Of Blind Users' Experiences With Diy Manuals And Ai-Rewritten Instructions For Assembly, Operation, And Troubleshooting Of Tangible Products, Monalika Padma Reddy, Aruna Balasubramanian, Jiawei Zhou, Xiaojun Bi, Iv Ramakrishnan, Vikas Ashok Jan 2026

Lost In Instructions: Study Of Blind Users' Experiences With Diy Manuals And Ai-Rewritten Instructions For Assembly, Operation, And Troubleshooting Of Tangible Products, Monalika Padma Reddy, Aruna Balasubramanian, Jiawei Zhou, Xiaojun Bi, Iv Ramakrishnan, Vikas Ashok

Computer Science Faculty Publications

AI tools like ChatGPT and Be-My-AI are increasingly being used by blind individuals. Although prior work has explored their use in some Do-It-Yourself (DIY) tasks by blind individuals, little is known about how they use these tools and the available product-manual resources to assemble, operate, and troubleshoot physical/tangible products – tasks requiring spatial reasoning, structural understanding, and precise execution. We address this knowledge gap via an interview study and a usability study with blind participants, investigating how they leverage AI tools and product manuals for DIY tasks with physical products. Findings show that manuals are essential resources, but product-manual instructions …

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A Comparative Analysis Of Explainable Ai (Xai) Techniques For Transparent And Reliable Image Classification, Sovon Chakraborty, Shakib Mahmud Dipto, Kevin R. Pilkiewicz, Michael L. Mayo, Pratip Rana Jan 2026

A Comparative Analysis Of Explainable Ai (Xai) Techniques For Transparent And Reliable Image Classification, Sovon Chakraborty, Shakib Mahmud Dipto, Kevin R. Pilkiewicz, Michael L. Mayo, Pratip Rana

Computer Science Faculty Publications

Evaluating the trustworthiness of black-box machine learning models remains a significant methodological challenge. Their lack of transparency and interpretability limits applicability, because stakeholders often seek transparency before trusting the results of black-box machine learning models. Explainable AI (XAI) methods provide for human-understandable justifications and informed decision-making of these black-box architectures. Therefore, it is imperative to select the proper XAI model tailored to specific tasks. In this research, we focus on examining four XAI techniques: PEEK, LRP, GRAD-CAM, and LIME to understand how they perform against each other for image classification tasks. We evaluate the performance, robustness, generalizability, noise stability, and …

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Explainable Convolutional Neural Network Model Provides An Alternative Genome-Wide Association Perspective On Mutations In Sars-Cov-2, Parisa Hatami, Richard Annan, Luis Miranda, Jane Gorman, Mengjun Xie, Letu Qingge, Hong Qin Jan 2026

Explainable Convolutional Neural Network Model Provides An Alternative Genome-Wide Association Perspective On Mutations In Sars-Cov-2, Parisa Hatami, Richard Annan, Luis Miranda, Jane Gorman, Mengjun Xie, Letu Qingge, Hong Qin

Computer Science Faculty Publications

Identifying informative genomic features in SARS-CoV-2 can help clarify patterns of viral evolution. In this study, we developed an explainable convolutional neural network (CNN) model to classify SARS-CoV-2 genomic sequences into the WHO-designated Variants of Concern (VOCs), Alpha, Beta, Gamma, Delta, and Omicron. Using a balanced dataset of genomes, the classification CNN achieved 99.96% accuracy on the held-out test set. To interpret the model’s predictions, we applied SHapley Additive exPlanations (SHAP) to estimate the contribution of each nucleotide position to VOC-label prediction and compared aggregated attributions with a chi-square GWAS baseline applied to the same categorical labels. SHAP prioritized several …

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Susceptibility To High-Fidelity Misinformation: An Eye-Tracking Analysis, Yasasi Abeysinghe, Gavindya Jayawardena, Enkelejda Kasneci, Sampath Jayarathna Jan 2026

Susceptibility To High-Fidelity Misinformation: An Eye-Tracking Analysis, Yasasi Abeysinghe, Gavindya Jayawardena, Enkelejda Kasneci, Sampath Jayarathna

Computer Science Faculty Publications

With the rise of online misinformation and AI-generated text, understanding human perception of news truthfulness is critical. In this study, we examine visual attention and cognitive processing using eye-tracking measures as individuals read fake and real news articles sharing nearly identical structure and imagery, differing only in subtle textual changes. Using the public FakeNewsPerception dataset, we analyze advanced gaze measures, including scanpaths, AOI transitions, and luminance-corrected pupil measures, beyond basic gaze features, in relation to news truthfulness and perceived believability. Results show that, given the high fidelity of the fake news, readers exhibited comparable visual scanning patterns, attention allocation across …

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Memebuddy: Dialog-Style Audio Representations For Engaging Non-Visual Meme Experiences, Chirag Bhansali, Vikas Ashok, Hae-Na Lee Jan 2026

Memebuddy: Dialog-Style Audio Representations For Engaging Non-Visual Meme Experiences, Chirag Bhansali, Vikas Ashok, Hae-Na Lee

Computer Science Faculty Publications

Image memes are a pervasive form of online communication, widely used to convey humor, opinions, and cultural references. Prior work has explored making memes accessible to blind users, primarily through auto-generated descriptive captions. While these approaches improve comprehensibility and sometimes incorporate prosodic or emotional cues, they often fail to capture the humor, narrative structure, and contextual nuances that make memes engaging. We present MemeBuddy, a system that models memes as dialog, generating structured, multi-turn audio representations using role-based speakers. MemeBuddy reinterprets a meme as a conversation between two speakers, integrating extracted meme text with contextual knowledge implicitly inferred by a …

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Guidelines For Automatic Grading Of Student Essays Using Large Language Models, Diwakar Yalpi, Sruta Keerti Kasula, Ravi Mukkamala Jan 2026

Guidelines For Automatic Grading Of Student Essays Using Large Language Models, Diwakar Yalpi, Sruta Keerti Kasula, Ravi Mukkamala

Computer Science Faculty Publications

Automated essay evaluation using large language models (LLMs) has emerged as a promising approach to support scalable and consistent educational assessment. However, the effectiveness of LLM-based grading varies significantly across evaluation dimensions and is highly influenced by prompt design and model selection. In this study, we evaluate five state-of-the-art LLMs across five rubric-based categories: Relevance to Question, Reasoning and Critical Thinking, Evidence and Examples, Organization, and Clarity and Writing Quality. We systematically investigate the impact of three prompting strategies, including rubric-only prompting, exemplar-based prompting (with and without rubric guidance)(Original and Refined prompt designs) incorporating structured instructions. Additionally, a prompt ablation …

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Toward An Event-Level Analysis Of Hadron Structure Using Differential Programming, Kevin Braga, Markus Diefenthaler, Steven Goldenberg, Daniel Lersch, Yaohang Li, Jian-Wei Qiu, Kishansingh Rajput, Felix Ringer, Nobuo Sato, Malachi Schram Jan 2026

Toward An Event-Level Analysis Of Hadron Structure Using Differential Programming, Kevin Braga, Markus Diefenthaler, Steven Goldenberg, Daniel Lersch, Yaohang Li, Jian-Wei Qiu, Kishansingh Rajput, Felix Ringer, Nobuo Sato, Malachi Schram

Computer Science Faculty Publications

Reconstructing the internal properties of hadrons in terms of fundamental quark and gluon degrees of freedom is a central goal in nuclear and particle physics. This effort lies at the core of major experimental programs, such as the Jefferson Lab 12 GeV program and the upcoming Electron-Ion Collider. A primary challenge is the inherent inverse problem: converting large-scale observational data from collision events into the fundamental quantum correlation functions (QCFs) that characterize the microscopic structure of hadronic systems within the theory of QCD. Recent advances in scientific computing and machine learning have opened new avenues for addressing this challenge using …

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Attf-Gnn: An Attention-Based Multi-Omics Graph Neural Network With Modality Learning For Disease Subtyping, Sovon Chakraborty, Eleni Adam, Terry Stilwell, Harold Riethman, Desh Ranjan, Pratip Rana Jan 2026

Attf-Gnn: An Attention-Based Multi-Omics Graph Neural Network With Modality Learning For Disease Subtyping, Sovon Chakraborty, Eleni Adam, Terry Stilwell, Harold Riethman, Desh Ranjan, Pratip Rana

Computer Science Faculty Publications

We propose AttF-GNN, an attention-based graph fusion strategy for diseases classification and subtyping. In multiomics analysis, not all types of molecular data are equally relevant for disease subtyping and considering all modalities equally may obscure discriminative signals and limit the effectiveness of predictive models by overlooking modality-specific contributions. Therefore, we design an attention-based multimodal GraphSAGE framework that can automatically emphasize the modalities providing the most relevant information for classification. At first, we have constructed three graphs using mRNA, RNA-seq and DNA methylation modalities, and train each omics with individual GraphSAGE encoders. Next, a unified intersection graph is formed using an …

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Larval Crowding In Culex Pipiens Generates Cumulative Cascading Effects Under Changing Environmental Conditions, Sengul Talay, Zafer Sakaci, Michele C. Weigle, Bugrahan Regaip Kilinc, Jenah Parman, Holly Gaff, Deniz Sirin, Bulent Alten, Dennis Bente, Sirri Kar Jan 2026

Larval Crowding In Culex Pipiens Generates Cumulative Cascading Effects Under Changing Environmental Conditions, Sengul Talay, Zafer Sakaci, Michele C. Weigle, Bugrahan Regaip Kilinc, Jenah Parman, Holly Gaff, Deniz Sirin, Bulent Alten, Dennis Bente, Sirri Kar

Computer Science Faculty Publications

Density-dependent population regulation is a fundamental driver in the population dynamics of living systems, ensuring a balanced and sustainable maintenance in nature. It has been suggested that the adverse developmental and morphological effect of high larval density in container mosquitoes represents a significant limiting factor for population density, and the need to investigate this possible importance within the framework of field-based principles has been emphasized. This semi-field study, conducted under the natural thermal regime and using a natural population in Turkish Thrace, aimed to examine the effects of non-food-limiting larval density (crowding effect) in the mosquito species, Culex pipiens ( …

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Distributed Semi-Speculative Parallel Anisotropic Mesh Adaptation, Kevin Garner, Polykarpos Thomadakis, Nikos Chrisochoides Jan 2026

Distributed Semi-Speculative Parallel Anisotropic Mesh Adaptation, Kevin Garner, Polykarpos Thomadakis, Nikos Chrisochoides

Computer Science Faculty Publications

This paper presents a distributed memory method for anisotropic mesh adaptation that is designed to avoid the use of collective communication and global synchronization techniques. In the presented method, meshing functionality is separated from performance aspects by utilizing a separate entity for each - a multicore cc-NUMA-based (shared memory) mesh generation software and a parallel runtime system that is designed to help applications leverage the concurrency offered by emerging high-performance computing (HPC) architectures. First, an initial mesh is decomposed and its interface elements (subdomain boundaries) are adapted on a single multicore node (shared memory). Subdomains are then distributed among the …

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