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Full-Text Articles in Physical Sciences and Mathematics

Draft Final Quarterly Operations And Maintenance Report: Butte Treatment Lagoon System – Fourth Quarter 2025, Pioneer Technical Services, Inc. Mar 2026

Draft Final Quarterly Operations And Maintenance Report: Butte Treatment Lagoon System – Fourth Quarter 2025, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.


Improving Public Transport Through Machine Learning Influence Flow Analysis (Mifa): Southern England Bus Case Study, Benjamin Lee, Wolfgang Garn, Masoud Fakhimi, Nick F. Ryman-Tubb Mar 2026

Improving Public Transport Through Machine Learning Influence Flow Analysis (Mifa): Southern England Bus Case Study, Benjamin Lee, Wolfgang Garn, Masoud Fakhimi, Nick F. Ryman-Tubb

Research Collection School Of Accountancy

Public transport (PT) is crucial for enhancing the quality of life and enabling sustainable urban development. As part of the UK Transport Investment Strategy, increasing PT usage is critical to achieving efficient and sustainable mobility. This paper introduces Machine Learning Influence Flow Analysis (MIFA), a novel framework for identifying the key influencers of PT usage. Using survey data from bus passengers in Southern England, we evaluate machine learning models. Subsequently, MIFA uncovers that easy payments, e-ticketing, and mobile applications can substantially improve the PT service. MIFA’s implementation demonstrates that strength and importance lead to specific insights into how service characteristics …


Interactions Between Air Pollution And Weather/Climate From Urban To Global Scales, Meng Gao, Xin Huang, Yucong Miao, Mengmeng Li, Claudio Mazzoleni Mar 2026

Interactions Between Air Pollution And Weather/Climate From Urban To Global Scales, Meng Gao, Xin Huang, Yucong Miao, Mengmeng Li, Claudio Mazzoleni

Michigan Tech Publications

Air pollution and meteorology are intricately linked. Weather modulates the formation, transport, and removal of pollutants, while aerosols and trace gases modify radiation balance, cloud microphysics, boundary-layer structure, and other factors. These two-way interactions span scales from urban to global and have important consequences. The papers collected in this special issue of Meteorological Applications examine how interactions between weather and pollution at various scales affect visibility, pollutant transport, crop yields, and other outcomes, collectively highlighting the crucial role of the interplay between air pollution and meteorology.


Explainable Deep Reinforcement Learning For Real-Time Network Intrusion Detection, Sebastian Bustamante Mar 2026

Explainable Deep Reinforcement Learning For Real-Time Network Intrusion Detection, Sebastian Bustamante

Shelby Hall Graduate Research Forum Posters

This research aims to enhance current Deep Reinforcement Learning (DRL)-based Intrusion Detection System (IDS) models by adding transparency using Explainable Artificial Intelligence (XAI). This study proposes a DRL-based IDS architecture that incorporates explainability to provide interpretable reasons for IDS decisions. A Deep Q-Network (DQN) agent will be trained in a simulated network using well-known datasets to learn traffic behavior. XAI methods will be applied to extract feature importance and allow users to understand why alerts were generated. The outcomes of this research will contribute to improving network security by providing more insight on how XAI could be adopted into modern …


Integrating Nonlinear Phase Space Analysis And Image-Based Representation For Network Intrusion Detection, Chakriya Suon Mar 2026

Integrating Nonlinear Phase Space Analysis And Image-Based Representation For Network Intrusion Detection, Chakriya Suon

Shelby Hall Graduate Research Forum Posters

With the rise of cyber threats, cybersecurity continues to play a critical role in the ever-changing landscape of technology by protecting and defending against threat agents. Our research applies novel machine learning (ML)techniques to detect network intrusions effectively. Our primary focus is to extend prior research, which has used network flows that are processed by a nonlinear phase space algorithm (NLPSA). The NLSPA approach has proven extremely effective in detecting anomalous or malicious traffic patterns on representative data but requires extensive training time.

Our contribution integrates deep learning into the anomaly detection approach by creating image-based representations of the adjacency …


Deconstructing Digital Disinformation: Social Media Data Preparation And Analysis For Healthcare Research, Russell W. Cantrell, Matt Campbell Mar 2026

Deconstructing Digital Disinformation: Social Media Data Preparation And Analysis For Healthcare Research, Russell W. Cantrell, Matt Campbell

Shelby Hall Graduate Research Forum Posters

The spread of medical misinformation poses significant threats to public health, healthcare system stability, and the quality of patient care. Our research examines misinformation targeting the U.S. healthcare system. It uses a mixed-methods approach that includes social media data analysis, surveys of practicing nurses, and agent-based simulation. This poster focuses on the initial phase, which attempts to detect potential misinformation and disinformation by analyzing patterns in social media posts and user account behaviors. A detailed account of the data preparation process lays the groundwork for examining how disinformation operates online. This phase draws on the Pushshift repository, which offers historical …


Detecting Sensor Data Manipulation, Ricky Green, Michael Black Mar 2026

Detecting Sensor Data Manipulation, Ricky Green, Michael Black

Shelby Hall Graduate Research Forum Posters

The integration of Information Technology (IT) and Operational Technology (OT) have made OT devices vulnerable to threats that have been successfully exploited with devastating results. Many modern techniques for hardening and securing enterprise IT systems are either incompatible with OT components in an Industrial Control System (ICS), reduce the efficiency of processes, or are prohibitively expensive to implement. Research in the area of ICS security focuses on a top-down approach, such as intrusion prevention by securing the perimeter of the network at layers 3 – 5 of the Purdue model by hardening IT systems. This approach is useful in Enterprise …


Temporal Eclectic Rule Extraction: Exploring Trustworthy Explainable Artificial Intelligence For Recurrent Neural Networks, Micah Israel Mar 2026

Temporal Eclectic Rule Extraction: Exploring Trustworthy Explainable Artificial Intelligence For Recurrent Neural Networks, Micah Israel

Shelby Hall Graduate Research Forum Posters

Enhancing temporal neural network interpretability can greatly increase the effectiveness of Intrusion Detection Systems (IDS). While explainable Deep Neural Networks (DNN) have been researched heavily in the literature for intrusion detection, explainable temporal neural networks lack the same attention. Current state-of-the-art XAI techniques rely on black-box surrogate explainers, which attempt to generate post-hoc explanations without valuable information inside the model's hidden neurons. To address this, this proposal introduces a novel white-box XAI method, Temporal Eclectic Rule Extraction (TERE), which is designed to provide explainable rules directly from temporal models. TERE aims to enhance decision transparency in IDS by offering interpretable …


Evaluating The Effects Of Anti-Forensic Activities In Additive Manufacturing Devices, Daniel B. Miller Mar 2026

Evaluating The Effects Of Anti-Forensic Activities In Additive Manufacturing Devices, Daniel B. Miller

Shelby Hall Graduate Research Forum Posters

Additive Manufacturing (AM) is a newer famlily of production tecchologies that constructs objects by fusing layers of material into the desired shape. Methods for achieving this as described in Gibson et al. [1] are varied and include Fused Filament Deposition, Selective Laser Sintering, Stereolithography (SLA), and Powder Bed Fusion. Computers are integral to the processes being responsible for creating and decoding design instructions, collecting and processing sensor data, and, ultimately, directing the activity of the machines which implement the process. Additionally, the AM industry is rapidly expanding, worth an estimated $23 billion in 2023 and projected to reach $88 billion …


Detecting Sophisticated Cyberattacks On Public Water Infrastructure, Ayrton Purdy Mar 2026

Detecting Sophisticated Cyberattacks On Public Water Infrastructure, Ayrton Purdy

Shelby Hall Graduate Research Forum Posters

From around the globe, malicious actors continually probe critical infrastructure assets for weaknesses. Their backgrounds, goals, and motives may vary, but the purpose of their attacks is the same: to damage, undermine, or exploit the functionality of these assets [2]. At a fundamental level, critical infrastructure is any essential system and asset vital to national security. Critical infrastructure includes assets such as power, transportation, telecommunications, water and wastewater systems (WWS), and many more [3].


Evaluating Carbon Risk And Benefit Under Improved Forest Management Prescriptions In A California Mixed Conifer Stand, Jonathan A. Garcia Mar 2026

Evaluating Carbon Risk And Benefit Under Improved Forest Management Prescriptions In A California Mixed Conifer Stand, Jonathan A. Garcia

Master's Theses

Improved forest management (IFM) prioritizes carbon accumulation through practices such as extended rotations and retention harvesting. These management strategies, increase fuel loads and elevate the potential fire intensity, may offset the benefits of carbon sequestration. Additionally, IFMs use spatially complex silvicultural treatments that may introduce prediction errors into the simulation processes used for long-term projections, and carbon accounting.

We evaluated the extent to which calibration in the Forest Vegetation Simulator (FVS) reduces error in aboveground carbon stock predictions and tested whether modeling approaches and calibration influence the magnitude and direction of basal area increment (BAI) prediction error using generalized mixed-effects …


Law Library Blog (March 2026): Legal Beagle's Blog Archive, Roger Williams University School Of Law Mar 2026

Law Library Blog (March 2026): Legal Beagle's Blog Archive, Roger Williams University School Of Law

Law Library Newsletters/Blog

No abstract provided.


The Modern Sisyphus Blows Leaves: Attitudes And Impacts Regarding Leaf Litter Removal On A Suburban Campus, A. C. Nony, M. R. Mcclung, M. L. Reid Mar 2026

The Modern Sisyphus Blows Leaves: Attitudes And Impacts Regarding Leaf Litter Removal On A Suburban Campus, A. C. Nony, M. R. Mcclung, M. L. Reid

Journal of the Arkansas Academy of Science

Leaf litter habitat disruption in suburban spaces stems from the prevalence of “lawn culture,” that is, the accepted societal norm that land immediately surrounding humans or meant for human recreational use should be clean, tidy, controlled, and aesthetically pleasing, above other considerations. When leaf litter on residential and recreational lawns is cleared, it removes vital habitat for organisms of several taxa, especially species that rely on litter as a moisture and temperature-controlled substrate for overwintering. We administered an opinion survey to students, staff, and faculty at Hendrix College, a highly residential and suburban campus in Conway, Arkansas, to assess views …


Time-Dependent Amplification Of Growth Rates In A Plankton-Oxygen Model, Rapha Coutin Mar 2026

Time-Dependent Amplification Of Growth Rates In A Plankton-Oxygen Model, Rapha Coutin

Master's Theses

Near-bottom hypoxia occurs when dissolved oxygen levels drop to a level that is harmful to marine biology, creating biological dead zones along the ocean floor. Recent years have seen a dramatic increase in the percentage of coastal, near-bottom, hypoxic water, with the average in 2021 nearly double that of the average from 2009 to 2018 and about twenty-eight times the average from 1950 to 1980. Recent literature has linked this increase in oceanic hypoxia to the increase in upwelling-favorable winds caused by climate change. Upwelling brings low-oxygen, nutrient-rich water up to the surface, leading to plankton blooms and mass consumption …


A Survey On Heterogeneous Computing Using Smartnics And Emerging Data Processing Units, Nathan Tibbetts, Sifat Ibtisum, Satish Puri Mar 2026

A Survey On Heterogeneous Computing Using Smartnics And Emerging Data Processing Units, Nathan Tibbetts, Sifat Ibtisum, Satish Puri

Computer Science Faculty Research & Creative Works

The emergence of new, off-path smart network cards (SmartNICs), known generally as Data Processing Units (DPU), has opened a wide range of research opportunities. Of particular interest is the use of these and related devices in tandem with their host's CPU, creating a heterogeneous computing system with new properties and strengths to be explored, capable of accelerating a wide variety of workloads. This survey begins by providing the motivation and relevant background information for this new field, including its origins, a few current hardware offerings, major programming languages and frameworks for using them, and associated challenges. We then review and …


Identifying And Mitigating Api Misuse In Large Language Models, Terry Yue Zhuo, Junda He, Jiamou Sun, Zhenchang Xing, David Lo, John Grundy, Xiaoning Du Mar 2026

Identifying And Mitigating Api Misuse In Large Language Models, Terry Yue Zhuo, Junda He, Jiamou Sun, Zhenchang Xing, David Lo, John Grundy, Xiaoning Du

Research Collection School Of Computing and Information Systems

API misuse in code generated by large language models (LLMs) presents a serious and growing challenge in software development. While LLMs demonstrate impressive code generation capabilities, their interactions with complex library APIs are often error-prone, potentially leading to software failures and vulnerabilities. In this paper, we conduct a large-scale study of API misuse patterns in LLM-generated code, analyzing both method selection and parameter usage across Python and Java, using three representative LLMs (StarCoder-7B, Qwen2.5-Coder-7B, and GitHub Copilot). Based on extensive manual annotation of 3,209 method-level and 3,492 parameter-level misuses, we identify and categorize four recurring misuse types by building on …


Intramolecular Nonbonding Interactions And Geared Phenyl Twisting In Para-Disubstituted 1,4-Diphenylazines: Electron Correlation Effects On Molecular Conformations And Enantiomerization, Kaidi Yang, Harmeet Bhoday, Rainer Glaser Mar 2026

Intramolecular Nonbonding Interactions And Geared Phenyl Twisting In Para-Disubstituted 1,4-Diphenylazines: Electron Correlation Effects On Molecular Conformations And Enantiomerization, Kaidi Yang, Harmeet Bhoday, Rainer Glaser

Chemistry Faculty Research & Creative Works

The results are reported of potential energy surface (PES) analyses of six symmetrical azines Yp − Ph − RC=N − N=CR − Ph − Yp, namely, the benzaldehyde azines 1H, 2H, and 8H with R = H and the acetophenone azines 1M, 2M, and 8M with R = Me. The Y substituents Cl (1), Br (2), and Me (8) were studied because sets of polymorphs I (C2-symmetry, azine twist τ ≈ 135 ± 10°, disrotatory phenyl twists ϕi ≠ 0°) and II (Ci-symmetry, τ = 180°, conrotatory ϕi ≠ 0°) were crystallized for these three azines. The …


Deep Learning Approaches For Anti-Money Laundering On Mobile Transactions: Review, Framework, And Directions, Jiani Fan, Lwin Khin Shar, Ruichen Zhang, Ziyao Liu, Wenzhuo Yang, Dusit Niyato, Kwok-Yan Lam Mar 2026

Deep Learning Approaches For Anti-Money Laundering On Mobile Transactions: Review, Framework, And Directions, Jiani Fan, Lwin Khin Shar, Ruichen Zhang, Ziyao Liu, Wenzhuo Yang, Dusit Niyato, Kwok-Yan Lam

Research Collection School Of Computing and Information Systems

Money laundering is a financial crime that obscures the origin of illicit funds, necessitating the development and enforcement of anti-money laundering (AML) policies by governments and organizations. The proliferation of mobile payment platforms and smart IoT devices has significantly complicated AML investigations. As payment networks become more interconnected, there is an increasing need for efficient real-time detection to process large volumes of transaction data on heterogeneous payment systems by different operators such as digital currencies, cryptocurrencies, and account-based payments. Most of these mobile payment networks are supported by connected devices, many of which are considered loT devices in the FinTech …


Invert Your Prompt: Editing-Aware Diffusion Inversion, Yangyang Xu, Wenqi Shao, Yong Du, Haiming Zhu, Yang Zhou, Jiayuan Xie, Ping Luo, Shengfeng He Mar 2026

Invert Your Prompt: Editing-Aware Diffusion Inversion, Yangyang Xu, Wenqi Shao, Yong Du, Haiming Zhu, Yang Zhou, Jiayuan Xie, Ping Luo, Shengfeng He

Research Collection School Of Computing and Information Systems

Recent advancements in text-guided diffusion models have enabled powerful image manipulation capabilities. However, balancing reconstruction fidelity and editability for real images remains a significant challenge. In this work, we introduce Editing Inversion (EditInv), a novel framework that inverts and edits real images for specific editing tasks by optimizing specific prompt embeddings within the extended  space. By leveraging distinct embeddings across different U-Net layers and time steps, EditInv seamlessly integrates inversion and editing through reciprocal optimization, ensuring both high fidelity and precise editability. This hierarchical editing mechanism classifies tasks into structure, appearance, and global edits, optimizing only those embeddings that are …


Cylindformer: Image-To-Point Cloud Registration With Cylindrical Transformer, Jingtao Wang, Hao Tang, Yanpeng Sun, Shengfeng He, Zechao Li Mar 2026

Cylindformer: Image-To-Point Cloud Registration With Cylindrical Transformer, Jingtao Wang, Hao Tang, Yanpeng Sun, Shengfeng He, Zechao Li

Research Collection School Of Computing and Information Systems

Accurate correspondence extraction between distinctive pixel-wise and point-wise features is critical for image-to-point cloud (I2P) registration. Recent efforts leveraging Transformers for I2P feature representation have demonstrated potential, primarily by first capturing intra-modality global contextual dependencies via self-attention, and then learning cross-modality correlations via cross-attention. The strength of vanilla Transformers lies in modeling cross-modality global feature correlations. However, such mechanisms often struggle with the structural disparity between dense image pixels and sparse 3D points, hindering the establishment of fine-grained correspondences. Moreover, global attention may introduce ambiguity, as interactions with many inconsistent regions of intra-modality may degrade feature distinctiveness. To address these …


Exploring Neural Network Structure Code Reuse In The Open-Source Community For Improving Maintenance, Xiaoning Ren, Yuekun Wang, Chongyang Liu, Yueming Wu, Qiang Hu, Lijun Zhang, Yinxing Xue Mar 2026

Exploring Neural Network Structure Code Reuse In The Open-Source Community For Improving Maintenance, Xiaoning Ren, Yuekun Wang, Chongyang Liu, Yueming Wu, Qiang Hu, Lijun Zhang, Yinxing Xue

Research Collection School Of Computing and Information Systems

Neural networks (NNs) have rapidly advanced, demonstrating exceptional performance across various fields, leading to a surge in open-source NN projects. The complexity and rapid growth of these projects pose significant challenges for maintenance within the open-source community. Given that NN architecture code is the core asset of NN projects, understanding its reuse in the open-source community is essential for effective maintenance, such as reducing redundancy and identifying potential intellectual property violations. While prior studies have examined code reuse in open-source projects, they have two key limitations: They do not specifically address NN structure code, and they rely on manually selected …


Compositions Of Variant Experts For Integrating Short-Term And Long-Term Preferences, Dinh Hieu Do, Hady Wirawan Lauw Mar 2026

Compositions Of Variant Experts For Integrating Short-Term And Long-Term Preferences, Dinh Hieu Do, Hady Wirawan Lauw

Research Collection School Of Computing and Information Systems

In the online digital realm, recommendation systems are ubiquitous and play a crucial role in enhancing user experience. These systems leverage user preferences to provide personalized recommendations, thereby helping users navigate through the paradox of choice. This work focuses on personalized sequential recommendation, where the system considers not only a user’s immediate, evolving session context, but also their cumulative historical behavior to provide highly relevant and timely recommendations. Through an empirical study conducted on diverse real-world datasets, we have observed and quantified the existence and impact of both short-term (immediate and transient) and long-term (enduring and stable) preferences on users’ …


A Novel Privacy-Preserving User Information Queries Scheme With Functional Policy, Yuhang Lei, Rui Shi, Yang Yang, Chunjie Cao, Huamin Feng Mar 2026

A Novel Privacy-Preserving User Information Queries Scheme With Functional Policy, Yuhang Lei, Rui Shi, Yang Yang, Chunjie Cao, Huamin Feng

Research Collection School Of Computing and Information Systems

Privacy-preserving information queries enable a requester to obtain only the value f(x) computed over sensitive data x, while preventing disclosure of the underlying records. Existing approaches typically reveal full data, incur high on-chain overhead, or lack fair and verifiable delivery of function outputs. We propose a general-purpose, blockchain-compatible framework that ensures the requester learns only f(x) with no extra leakage and that the provider receives fair payment. The design integrates Adaptor Signatures (AS) for fair exchange and Inner-Product Functional Encryption (IPFE) for fine-grained function extraction. The framework is domain-agnostic and applicable to privacy-sensitive applications such as medical insurance and financial …


Video Generation Techniques For Novel View Synthesis With Flow-Matching Transformers, Xiuyuan Qiu Mar 2026

Video Generation Techniques For Novel View Synthesis With Flow-Matching Transformers, Xiuyuan Qiu

Master's Theses

Novel view synthesis (NVS) aims to generate images of a scene from unseen camera viewpoints. Recent work, such as Stable Virtual Camera, shows that large-scale image diffusion models like Stable Diffusion can be adapted for pose-conditioned view synthesis by incorporating video-generation techniques with camera conditioning. In this thesis, we introduce MVFlow, a new NVS model that extends this approach to a different image generation architecture: a flow-matching diffusion transformer, specifically FLUX.1, which has demonstrated strong performance in image synthesis. We evaluate MVFlow under varying input view counts and pose distance settings. Our results show that this architectural transfer is feasible; …


Dynamic Magnetic Null Behavior In Planar Ion Diodes: Particle-In-Cell Analysis Of Field Oscillations And Ion Beam Dynamics, Jesse C. Foster, Stephen B. Swanekamp, Paul F. Ottinger Mar 2026

Dynamic Magnetic Null Behavior In Planar Ion Diodes: Particle-In-Cell Analysis Of Field Oscillations And Ion Beam Dynamics, Jesse C. Foster, Stephen B. Swanekamp, Paul F. Ottinger

Faculty Publications

Particle-in-cell simulations of a 1.75 MV, 375 kA, and 50 ns planar pinched-beam diode reveal that the strongest gigahertz-frequency oscillations in electric field and ion current arise from the dynamic motion of the magnetic null near the anode tip. These oscillations, which appear when the ion transit time becomes comparable to the local field-variation timescale, periodically expand the effective anode–cathode gap and generate bursts of over-accelerated ions. The resulting ion energy spectrum broadens substantially near the null while maintaining excellent beam uniformity along the anode. The simulations, therefore, demonstrate a direct physical linkage between ion transit time instability and magnetic …


A Critical Review Of Statistical, Signal Processing And Machine Learning Methods For Continuous And High-Frequency Water Quality Data Improvement, A.T. Badrudeen, D. Sahoo, Calvin Sawyer, Jeremy Pike, R.D. Haramel Mar 2026

A Critical Review Of Statistical, Signal Processing And Machine Learning Methods For Continuous And High-Frequency Water Quality Data Improvement, A.T. Badrudeen, D. Sahoo, Calvin Sawyer, Jeremy Pike, R.D. Haramel

Publications

In the digital water world, high-frequency water quality monitoring from sensors is crucial for capturing rapid changes, especially during storm events or discharge fluctuations, in which important signals can occur at sub-hourly intervals. These signals are represented in a time series and can sometimes be irregular, noisy, and prone to missing values or errors due to buried conditions, sediment interference, and signal loss. The fine resolution of reporting also increases the risk of sensor errors and data loss, necessitating effective correction methods to ensure the accuracy and usability of the data. This literature review investigates the current state of time …


Student Mental Health: Screening For Stress, Anxiety And Depression Using Fitbit Data, Rebecca Lopez, Avantika Shrestha, Ml Tlachac, Kevin Hickey, Xingting Guo, Shichao Liu, Elke Rundensteiner Mar 2026

Student Mental Health: Screening For Stress, Anxiety And Depression Using Fitbit Data, Rebecca Lopez, Avantika Shrestha, Ml Tlachac, Kevin Hickey, Xingting Guo, Shichao Liu, Elke Rundensteiner

Information Systems and Analytics Department Faculty Conference Proceedings

College students experience many stressors, resulting in high levels of anxiety and depression. Wearable technology provides unobtrusive sensor data that can be used for the early detection of mental illness. However, current research is limited concerning the variety of psychological instruments administered, physiological modalities, and time series parameters. In this research, we collect the Student Mental and Environmental Health (StudentMEH) Fitbit dataset from students at our institution during the pandemic. We assess the ability of predictive machine learning models to screen for depression, anxiety, and stress using different Fitbit modalities. Our findings indicate potential in physiological modalities such as heart …


How Agile Became The Design Philosophy Of Ai Fishbowl Under Real-World Constraints, Jad Saad Mar 2026

How Agile Became The Design Philosophy Of Ai Fishbowl Under Real-World Constraints, Jad Saad

University Honors Theses

This capstone review examines the development of AI Fishbowl, a public-facing, interactive artificial intelligence system, as a case study in how Agile methods evolve from a project management tool into a design philosophy under real-world constraints. Although the project adopted an Agile workflow early on through a Kanban-style task management approach, the initial system design and architecture were still shaped by a largely plan-first mindset. This created a mismatch between flexible process and rigid design assumptions, which became increasingly apparent as the team moved from high-level architecture into implementation.

A critical turning point occurred when early architectural plans proved difficult …


Transfer Learning Neural Networks For Nuclear Forensic Image Morphology Using Image Splitting Techniques, Niko A. Petrocelli, Lee C. Lambert, Brett J. Borghetti, Abigail A. Bickley Mar 2026

Transfer Learning Neural Networks For Nuclear Forensic Image Morphology Using Image Splitting Techniques, Niko A. Petrocelli, Lee C. Lambert, Brett J. Borghetti, Abigail A. Bickley

Faculty Publications

Manual morphological analysis of actinide particles from scanning electron microscope (SEM) imagery is a critical component of nuclear forensics but is prone to significant inter-analyst variability. To address this challenge, this work develops and evaluates an automated classification method using deep learning. We introduce a methodology based on partitioning 1906 SEM images, representing 13 classes of uranium compounds, into smaller patches for analysis. Three convolutional neural network (CNN) architectures of increasing complexity were compared: a custom baseline CNN, a simple transfer learning model using ResNet50v1, and a complex model featuring hierarchical feature extraction and a spatial attention mechanism built upon …


The Application, Construction, And Validation Of Hidden Markov Model Profiles For Carbonic Anhydrase Enzymes, Samuel F. Kaplan Mar 2026

The Application, Construction, And Validation Of Hidden Markov Model Profiles For Carbonic Anhydrase Enzymes, Samuel F. Kaplan

Master's Theses

Carbonic anhydrases (CAs) catalyze the reversible hydration of CO2 and have evolved independently at least eight times, resulting in structurally distinct enzyme families (α, β, γ, δ, ζ, η, θ, ι). Traditional sequence alignment methods struggle to classify these convergently evolved proteins because their sequential similarity does not reliably indicate functional or evolutionary relationships. Many CA sequences in public databases are annotated generically without family assignments, and prior computational approaches have focused predominantly on the three well characterized families (α, β, γ), leaving the five recently discovered classes without robust classification tools. Family level assignment is often a prerequisite for …