Physical Sciences and Mathematics Commons^™

Formation Of Pyramidal Palladium Enhanced By B(C₆F₅)₃ Additive Enabling Selective Alkene Monoisomerization, Paul D. Miller, Trandon A. Bender

Chemistry & Biochemistry Faculty Publications

The addition of a strong Lewis acid, tris(pentafluorophenyl)borane, facilitates the reduction of Pd(cod)Cl₂ with Et₃SiH to form palladium nanoparticles in organic solvents. It was found that these palladium nanoparticles are capable of selective monoisomerization of linear alkenes. This heterogeneous palladium catalyst is tolerant of a wide variety of functional groups, confirmed by substrate and robustness screenings. It is also possible to utilize poly(methylhydro)siloxane, an industrial waste byproduct, as the reductant to enable similar isomerization chemistry.

Experimental Demonstration And Study Of Transmembrane-Electrostatically Localized Protons Prevail, James Weifu Lee

Chemistry & Biochemistry Faculty Publications

In this review in relation to some interesting arguments from Silverstein, it is now reaffirmed that the experimental demonstration of transmembrane-electrostatically localized protons (TELPs) was successfully accomplished through 1) using an aluminum film as a TELPs sensor in a biomimetic anode water-membrane-water cathode system, 2) analyzing the water-electrolysis current curve, and 3) measuring bulk liquid phase pH. Formation of induced TELPs was subsequently discovered in an anode water-membrane-water-membrane-water cathode system. The discovery of induced TELPs enabled clean experimental tests on the cation-TELPs exchange process by using sodium bicarbonate or potassium bicarbonate solution in the central liquid chamber. The sodium/TELPs exchange …

Application Of Telc Model To Better Elucidate Neural Stimulation By Touch, James Weifu Lee

Chemistry & Biochemistry Faculty Publications

Aim: This study is to better understand how the transient ion transport activity of touch receptors could change the graded potential to stimulate an action potential firing.

Methods: The latest transmembrane-electrostatically localized protons/cations charges (TELC) theory is employed for numerical analysis to calculate the neural touch signal transduction responding time required to fire an action potential spike.

Results: A neural action potential spike was constructed successfully using newly developed time-dependent TELC-based neural transmembrane potential integral equations (Equations 5, 6, and 7). The results explicated that the TELC curve has an inverse relationship with neural transmembrane potential since its curve appears …

The B³Π–A³Δ And B³Π–X¹Σ+ Band Systems Of Zro, Manish Bhusal, Peter F. Bernath, Jacques Liévin, Léo Lavy

Chemistry & Biochemistry Faculty Publications

The zirconium oxide (ZrO) b³Π–a³Δ system is a prominent source of opacity in the atmospheres of S-type stars in the near-infrared region. The emission spectra of ZrO, obtained at the National Solar Observatory located at Kitt Peak in Arizona, have been utilized to analyze this band system. A reanalysis of the 0–0 vibrational band of the b³Π–a³Δ transition has been carried out. For the first time, the vibrational bands with 1 ⩽ v ′ ⩽ 3 and v″ ≤ 4 for the same electronic transition have been rotationally analyzed using PGOPHER. Additionally, the 0–0 and 1–1 bands of the spin-forbidden …

Identification Of Π-Stacking Motifs In Naphthalene Diimides Via Solid-State Nmr, Jennifer E. Mejia, Hannah E. Butler-Au, Nalaya E. Thompson, Karcher D. Goodman, Elizabeth R. Zengel, Robert D. Pike, Jingdong Mao, Craig A. Bayse

Chemistry & Biochemistry Faculty Publications

Organic electronics, featuring π-conjugated small molecules and polymers, have gained significant attention for their potential in flexible, lightweight devices. However, characterization of the ordered, π-stacking domains within these materials using microscopy or X-ray diffraction (XRD) is challenging with complex systems or when crystallography is impractical. This study applied 1D ¹³C multiple cross-polarization magic angle spinning (multiCP/MAS) and 2D ¹H-¹³C heteronuclear correlation (HetCor) solid-state nuclear magnetic resonance (ssNMR) to systematically characterize π-stacking motifs in a series of N,N'-dialkyl naphthalene diimides (NDIs). These techniques were shown to distinguish between the electronic environments attributed to different π-stacking motifs adopted in these NDIs, such …

Check Your Data Before You Wreck Your Model: The Impact Of Careless Responding On Substance Use Data Quality, Abby L. Braitman, Anna M. Petrey, Jennifer L. Shipley, Rachel Ayala Guzman, Emily Renzoni, Alison Looby, Adrian J. Bravo

Psychology Faculty Publications

Background: The accuracy of survey responses is a concern in research data quality, especially in college student samples. However, examination of the impact of removing participants from analyses who respond inaccurately or carelessly is warranted given the potential for loss of information or sample diversity. This study aimed to understand if careless responding varies across a number of demographic indices, substance use behaviors, and the timing of survey completion.

Method: College students (N = 5809; 70.7% female; 75.7% White, non-Hispanic) enrolled in psychology classes from six universities completed an online survey assessing a variety of demographic and substance use-related information, …

Monitoring Plastic Pollution Using Bioindicators: A Global Review And Recommendations For Marine Environments, Matthew S. Savoca, Neil Angelo Abreo, Andres H. Arias, Laura Baes, Matteo Baini, Elisa Bergami, Susanne Brander, C. Anela Choy, Illaria Corsi, Bavo De Witte, Camila Domit, Sarah Dudas, Emily M. Duncan, Claudia E. Fernández, Maria Cristina Fossi, Ostin Garcés-Ordóñez, Brendan J. Godley, Daniel Gonzalez-Parades, Victoria González Carman, Bonnie M. Hamilton, Britta Denise Hardesty, Sang Hee Hong, Shirel Kahane-Rapport, Lauren M. Kashiwabara, Mariana Baptista Lacerda, Guillermo Luna-Jorquera, Clara Manno, Sarah E. Nelms, Cristina Panti, Diego J. Pérez-Venegas, Christopher K. Pham, Jennifer F. Provencher, Sara Purca, Harunur Rashid, Yasmina Rodríguez, Conrad Sparks, Chengjun Sun, Martin Thiel, Catherine Tsangaris, Robson G. Santos

Biological Sciences Faculty Publications

Monitoring the movement of plastic into marine food webs is central to understanding and mitigating the plastic pollution crisis. Bioindicators have been a component of the environmental monitoring toolkit for decades, but how, where, and which bioindicators are used in long-term monitoring programs has not yet been assessed. Moreover, these programs have yet to be synthesized and evaluated globally. Doing so is imperative if we are to learn from these pioneering programs and expand on their efforts. We reviewed global monitoring programs using bioindicators that focus on plastic pollution and found 11 worldwide that met our definition of long-term monitoring. …

Building Heat-Resilient Caribbean Reefs: Integrating Thermal Thresholds And Coral Colonies Selection In Restoration, Macarena Blanco Pimentel, Johanna Calle-Triviño, Daniel J. Barshis, Sancia E. T. Van Der Meij, Megan K. Morikawa

Biological Sciences Faculty Publications

Caribbean reefs face increasingly frequent and intense bleaching events, adding to the numerous other threats impacting these ecosystems. Addressing these challenges requires global action to reduce climate drivers, along with local efforts like reef restoration. Active restoration using thermotolerant coral colonies offers a potential strategy to alleviate these impacts; however, gaps remain in identifying context-specific temperature thresholds to guide colony selection and standardize thermotolerance assessment methods. This study addressed these gaps in two phases. First, by determining practical thresholds to differentiate species responses to heat stress; and second, by developing a framework to identify and prioritize resilient colonies for restoration. …

Future-Oriented Coastal Protection: The Utility Of Living Shorelines Under Changing Climatic Conditions, Gabriella R. Dipetto, Donna Marie Bilkovic, Taylor M. Sloey, Erik S. Yando, Erik L. Walters

Biological Sciences Faculty Publications

An accumulation of novel nature-based shoreline management techniques have developed over the past two decades out of the continued need to protect waterfront land combined with an awareness of the relationship between healthy coastal ecosystems and human societies. Shoreline protection strategies such as living shorelines incorporate these nature-based approaches to simultaneously enhance ecosystem functioning while providing shoreline stabilization benefits. The continued role of these approaches into the future, however, will be challenged by a rapidly changing coastal environment. While living shorelines have received global attention and integration into climate policy and governance frameworks, the ability of shoreline systems to withstand …

The Pluralistic Natural Capital Values Of A Tropical City, Adrienne Grêt-Regamey, Justine Saunders, Peter Edwards, Daniel Richards, Jahson I. Alemu, Natasha Bhatia, Roman Carrasco, Zuzana Drillet, Tze Kwan Fung, Yan Feng Leon Gaw, Wanggi Jaung, Andrea Law, Rachel Ai Ting Leong, Aikeen Youu Ming Lim, Mahyar Masoudi, Yudhishthra Nathan, Rachel Rui Ying Oh, Wen Ting Ooi, Fairul Edros Ahmad Shaikh Shaikh, Xiao Ping Song, Claudia L.Y. Tan, Puay Yok Tan, Sergio Wicki, Lynn-Wei Wong, Yanyun Yan, Erik Yando, Alex Thiam Koon Yee, Jingyuan Zhang, Daniel A. Friess

Biological Sciences Faculty Publications

Nature in cities is essential for human well-being. Quantifying and valuing the goods and services provided by nature to city dwellers is missing in tropical contexts. Yet, as cities worldwide face similar challenges, understanding the services provided by tropical urban ecosystems becomes imperative for effective management. Here, we present the first Natural Capital Assessment of a tropical city, unveiling three critical insights. Firstly, we demonstrate the vital reliance of a developed tropical city on nature, particularly for climate change mitigation through regulating services. Secondly, we identify intact natural areas as Singapore’s most valuable assets, stressing the significance of the quality …

Copula-Based Bayesian Model For Detecting Differential Gene Expression, Prasansha Liyanaarachchi, N. Rao Chaganty

Mathematics & Statistics Faculty Publications

Deoxyribonucleic acid, more commonly known as DNA, is a fundamental genetic material in all living organisms, containing thousands of genes, but only a subset exhibit differential expression and play a crucial role in diseases. Microarray technology has revolutionized the study of gene expression, with two primary types available for expression analysis: spotted cDNA arrays and oligonucleotide arrays. This research focuses on the statistical analysis of data from spotted cDNA microarrays. Numerous models have been developed to identify differentially expressed genes based on the red and green fluorescence intensities measured using these arrays. We propose a novel approach using a Gaussian …

Drone-Based Medication Delivery For Rural, Flood-Prone Coastal Cities, Yin-Hsuen Chen, Amro M. El-Adle, Kevin J. O'Brien, Taylor Wentworth, Heather G. Richter

Center for Geospatial Science, Education & Analytics Faculty Publications

Access to healthcare remains a critical challenge for rural populations, particularly in flood-prone coastal communities where transportation barriers limit access to essential medical services. This study evaluates the effectiveness of drone-based medication delivery in improving healthcare accessibility for vulnerable populations on Virginia’s Eastern Shore. Compared to traditional personal vehicle travel, drone delivery reduced trip times from up to 50 minutes to under 10 minutes for more than 80% of the population, including elderly patients. Using publicly available datasets, we developed two transportation vulnerability indices that incorporate age, travel time, and flood risk to prioritize patients for drone-based pharmaceutical delivery. These …

Oxidation Camouflages Terrestrial Organic Matter To Appear Marine-Like, Aleksandar I. Goranov, Susan J. Carter, Ann Pearson, Patrick G. Hatcher

Chemistry & Biochemistry Faculty Publications

The export of terrestrial organic matter (TOM) to the ocean has been traditionally viewed to be minimal or only of significance in near-coastal continental margins. The broadly accepted explanation for the widespread loss of terrestrial lignin biomarkers and apparent disappearance of the <-25‰ stable carbon isotopic signature (δ¹³C) of TOM is that TOM is almost fully degraded before reaching the open ocean. Oceanic carbon (δ¹³C value ≥ -22‰) is therefore thought to be derived primarily from algae. However, an alternative explanation for the different molecular and δ¹³C signatures in terrestrial and marine environments may be that oxidative processing transforms TOM to appear marine-like. To test this hypothesis, we subjected eight TOM samples to a strong oxidation gradient. At carbon losses typical of TOM degradation during transport and sedimentation (above 60%), the differentiators of provenance disappeared, leaving a residue that was marine-like both chemically (aliphatic- and nitrogen-rich) and isotopically (δ¹³C enrichment of 4 to 9‰). This challenges the validity of conventional two-endmember mixing models, suggesting that a much larger fraction than previously estimated of the organic matter found in the ocean may originate from terrestrial sources, impacting global models of carbon cycling and sequestration.

Amphiphilic Tripodal Metalloligands: Synthesis, Coordination Chemistry And Preliminary Catalysis, Austin W. Medley, Paul D. Miller, Craig A. Bayse, Robert D. Pike, Trandon A. Bender

Chemistry & Biochemistry Faculty Publications

Triscatecholate binding has been widely studied in the context of biological systems, supramolecular chemistry, and weak aggregate interactions. However, the utilization of the triscatecholate binding motif for the preparation of metalloligands remains unexplored. Herein, we report the synthesis, structural characterization, and functional studies of a triscatecholate ligand with an appended pyridyl residue as a candidate for such applications. Our findings reveal that the selective formation of cis-triscatecholate-based metalloligands is influenced by electronic effects on the catecholate anions, enabling the targeted synthesis of Al(III), Ga(III), and In(III) triscatecholate metalloligands capable of binding Zn(II) and Ru(II) at the appended pyridyl moiety for …

Twenty Years Of Global Stratospheric Fluorine Inventories From Atmospheric Chemistry Experiment Fourier Transform Spectrometer (Ace-Fts) Measurements, N. Raymond, P. Bernath, C. Boone, M. Chipperfield

Chemistry & Biochemistry Faculty Publications

We present fluorine inventories calculated for twenty years (2004–2023) and five latitude bands (82°–60°N, 60°–30°N, 30°N–30°S, 30°–60°S, and 60°–82°S) at altitudes from the surface up to 55 km. The inventories were calculated using the Atmospheric Chemistry Experiment Fourier transform spectrometer (ACE‐FTS) version 5.2 retrievals of the volume mixing ratios (VMRs) of 15 fluorine‐containing species. Of these 15 species, 3 are product gases: HF, COF₂, COCIF, and 12 are source gases: SF₆, PFC-14 (CF₄), CFC-11 (CCl₃F), CFC-12 (CCl₂F₂), CFC-113 (CCIF₂CCl₂F), HCFC-22 (CHF₂CL), HCFC-141b(C₂H₃Cl₂F), HCFC-142b ( …

Exploring Physics Teacher Identity: Pathways Toward Equitable Instruction Among Teachers, Clausell Mathis, Jomo Mutegi, Turhan Carroll, Maya Patel, Andrea Wooley

Teaching & Learning Faculty Publications

Physics teacher identity encompasses teachers' beliefs and views toward being a physics teacher. Physics teacher identity is influenced by teachers' perspectives on physics teaching and learning. Previous studies on teacher identity in general suggest that the construct is complex and malleable. Studies further suggest that it influences instructional methods, student engagement, and classroom environment. However, within physics education, there has yet to be an examination of how physics teacher identity influences "equitable" teaching approaches. This qualitative study sought to identify various dimensions of physics teacher identity and its implications for physics education research. We interviewed secondary and postsecondary physics teachers …

Fire History, Ecological History, And Historical Human-Environment Interactions In The Northern Great Plains, James Victor Benes

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This dissertation explores the spatiotemporal signatures of fire in North American grassland ecosystems. In three chapters, I explore different aspects of fire history in the northern Great Plains. Chapter 1 is an introduction. Chapter 2 focuses on the Euro-American Settlement Period (ca. 1850–1950 C.E.). Fire histories from six different lakes in the Nebraska Sandhills are compared with two periods of historic drought and the establishment of United States Post Offices. Five of the six records show increased levels of biomass burning during the initial phases of Euro-American Settlement. Chapter 3 is a long-term (ca. 15,000 years), high-resolution fire history and …

Automated Methods For Estimating Blood Alcohol Concentration Level From Facial Cues, Ensiyeh Keshtkaran

Theses: Doctorates and Masters

This thesis investigates different approaches for detecting alcohol intoxication in drivers by analysing facial video data. Tackling this issue necessitates the creation of a novel dataset to overcome the limitations of existing datasets. The dataset constructed in this study is the first to include RGB video recordings of individual faces at varying levels of alcohol intoxication during simulated driving, featuring 60 participants with BAC levels ranging from 0 to 0.165 g/100ml. The constructed dataset not only supports this thesis, but also offers the broader scientific community a valuable resource for further study and development.

Building on this, this thesis presents …

Scientific Writing: A Guide From Data To Draft, Kristin M. Klucevsek

Open Education Materials

Textbook for ENGL302W (Scientific Writing)

CC BY-NC-SA (2025)

Theory And Applications Surrounding Markov Chains, Joseph J. Quisito Jr., Gallean Brown, Elijah Yoder

Capstone Showcase

This capstone project explores the Markov Chain – a mathematical model used to describe systems that transition between states based on probabilities. It begins by introducing the fundamental concepts, including transition matrices, state classifications, and stationary distributions. The paper then applies Markov Chain theory to real-world scenarios, such as simulating Snakes and Ladders games, predicting soccer match outcomes for Manchester United, and generating texts from movie lines. Finally, it discusses key findings, challenges, and potential areas for future research in the field.

Streamlining The Data Mining Process Through Ai-Driven Prompt Templates, Mia Montevirgen, Drew Yan, Clara Lu, Laurent Shen, Weihong Ni

Capstone Showcase

With the increasing use and relevancy of AI in the world, this project aims to harness the power of AI, specifically ChatGPT, to streamline the process of data mining workflows. By developing custom prompt templates, this project seeks to utilize OpenAI API to assist with key data mining tasks, including data understanding, importing, and cleaning. This approach aims to increase workflow speed, reproducibility, and accessibility in data mining projects. The effectiveness of these prompt templates is evaluated by applying them to diverse datasets and assessing their impact on accuracy, efficiency, and reproducibility. Overall, the project highlights the potential to use …

El Maíz Del Abuelo: Fidel Márquez Sanchez’S Legacy And Mexico’S Historical Maize Agriculture, Lucia Marquez-Uppman

Scripps Senior Theses

The Green Revolution was an era of scientific development in productive agricultural methods and technologies in the mid-twentieth century. High-yielding seed varieties, artificial fertilizers, irrigation infrastructure, pesticides, and herbicides all developed from this period. Texcoco, Mexico was the center of much of the Green Revolution's education and research from the 1940s onward at the Autonomous University of Chapingo, a prestigious agricultural school, with funding from the US-based philanthropic Rockefeller Foundation. Powerful consequences in the globe's agriculture emerged from the Green Revolution, including the production of maize, a staple crop in Mexico, especially for Indigenous and campesino populations. My abuelo, Fidel …

Weathering And Beyond: Leveraging Mathematical Modeling To Simulate Erosion In Digital Media, Fiona Irving-Beck

Scripps Senior Theses

How might we bring an idea to life from both a mathematical and an artistic perspective? Within Weathering, I use imagery of environmental erosion to explore the differences between physical and digital forms of representation. I created a physical painting of an abandoned copper mine, digitized the work, and then used a mathematical model to digitally “erode” it, which I re-translated into paintings. While the explicit texture present in physical work speaks best to my practice/intent, the mathematical framework that is the basis for my digital work affords a powerful mode of temporal flexibility. Used in conjunction, these two …

Predicting Capture And Survival Probabilities Of The Arizona Tiger Salamander: A Comparison Of Capture-Recapture Models, Brittney Nelson

Murray State Theses and Dissertations

Capture-recapture models are essential tools for estimating population dynamics in ecological studies. A fundamental component of these models is the capture history matrix, which records individual detection over time and serves as the basis for estimating survival and capture probabilities. This presentation explores three statistical approaches to these estimations: the Cormack-Jolly-Seber (CJS) model, the Hidden Markov Model (HMM) for CJS, and the Bayesian CJS model. The CJS model provides a likelihood-based framework for estimation, and the HMM CJS incorporates latent states into the model to account for uncertainty in detection. The Bayesian CJS extends this same analysis by integrating prior …

Spatial Vulnerability Towards Flooding And Mitigation Of Three Coastal Cities: Charleston, South Carolina | Passaic City, New Jersey| Virginia Beach, Virginia, Kory Abbott

All Graduate Theses, Dissertations, and Other Capstone Projects

This meta-analysis investigates the impact of flooding on three coastal communities along the Atlantic Coast: Charleston, South Carolina; Passaic City, New Jersey; and Virginia Beach, Virginia. One goal of this paper is to determine the adequacy or inadequacy in the flood mitigation responses of these communities so that future actions can be taken to improve flood mitigation measures. Another goal is to consider whether the cities experience environmental injustice in terms of flooding mitigation. This paper draws from governmental documents, news reports, local experiences, updated storm management systems, and scholarly articles. The methodology used in this meta-analysis is as follows: …

On The Applicability Of Generating Pathological Speech Data Using Large Language Models, Caroline Hopkins

SURF Posters 2025

Pathological speech data is scarce in Speech-Language Pathology (SLP). Synthetic data, thus, is an appealing alternative. It extends the amount of usable data without the risk for privacy concerns that naturally occurring data may bring. In this work, a collection of Large-Language-Model-based methods for generating synthetic pathological speech data are studied. Human experts in SLP as judges delivered negative opinions on the quality of the synthetic data generated by a variety of prompt engineering methods. From the judgements, the resulting data was found to be weak in reflecting the characteristics of the target disorders. Further research will involve fine-tuning the …

Moore Graphs, Trevor Saxton

Williams Honors College, Honors Research Projects

A Moore graph is a simple regular graph, with n vertices, degree d, and diameter k, that satisfies the Moore bound: n = 1 + d (d − 1)k − 1 d − 2 . There are graphs for which the bound is met and in which existence and uniqueness are known. For k = 2 it is known that the Moore bound is achieved for d = 2, 3, 7, with the case of d = 57 conjectured to exist. For k = 3 the bound is achieved for only d = 3 [5]. Due to the construction of …

Analysis Of Sled Dog Biomechanics, Natalie Bender

Williams Honors College, Honors Research Projects

This paper is an analysis of data collected by Dr Rachel Olson and her team. The data was collected from the same set of sled dogs before and after training for the Iditarod race. The goal of this paper is to draw conclusions on whether the gait of sled dogs’ change with fitness level. The data was cleaned in R to find the average peak for forelimb joint angles per run for each dog. The data was analyzed with 3 different ANOVAs – one including both the shoulder and carpus, one for just the shoulder, and one for just the …

Time Series Modeling Of Akron Air Quality Index (Aqi) Data, Mason Yurich

Williams Honors College, Honors Research Projects

With the increase in population and industrialization around the world, climate has become a major concern for many researchers. One measure that has drawn much interest is air quality. There are available resources that track the Air Quality Index (AQI) in most large cities, but there is a general lack of information regarding Air Quality forecasts, even for one day in the future. This project aims to find a useful statistical model for representing and predicting the AQI measure in Akron, Ohio over time. By using historical air quality data from the United States Environmental Protection Agency and AQI.in, an …

Geochronology And Geomorphology Of The Brule Spillway Of Glacial Lake Duluth, Madeline Josephine Laaksonen

All Graduate Theses, Dissertations, and Other Capstone Projects

During the Late Pleistocene and Early Holocene, a series of dyssynchronous advances and retreats resulted in the evolution of the Upper St. Croix River Valley. Proglacial lakes forming at the margins of the retreating ice within the Lake Superior Basin and subsequent multiple drainage events through the Brule Spillway have also drastically shaped the landscape. As a result, the Brule Spillway and broader St. Croix River valley presents an important case study to spillover processes occurring in proglacial landscapes and the reorganization of regional drainage networks and creation of a new hydrogeomorphic regime. While prior literature on the Spillway exists, …