Physical Sciences and Mathematics Commons^™

Unsupervised Learning With Word Embeddings Captures Quiescent Knowledge From Covid-19 And Materials Science Literature, Tasnim H. Gharaibeh

Dissertations

Millions of scientific papers are produced each year and the scientific literature is continuing to grow at a head-spinning speed. Thus, massive scientific knowledge exists in solid text, but all these publications make it difficult, if not impossible, for researchers to keep in up to date with discoveries, even within a narrow scientific area. This massive amount of information also makes it difficult to find implicit and hidden connections, relationships, and dependencies within the information that may guide the direction of future research or lead to valuable new insights. So, there is a need for algorithms or models that can …

Management Of Data Brokers In Support Of Smart Community Applications, Shadha Tabatabai

Dissertations

The widespread use of smart devices has led to the Internet of Things (IoT) revolution. Big data generated by billions of devices must be analyzed to make better decisions. However, this introduces security, communication, and processing problems. To solve these problems, we develop algorithms to enhance the work of brokers. We focus our efforts on three problems.

In the first problem, brokers are used in the cloud along with Software Defined Network (SDN) switches. We formulate minimizing brokers’ load difference within a reconfiguration budget with the constraint of indivisible topics as an Integer Linear Programming (ILP) problem. We show that …

Bayesian Credible Subgroup For Excess Zeroes, Daniel Nii Kwatei Quartey

Dissertations

A goal of subgroup analysis is to identify which subgroups of the population benefit from a given treatment. Traditional and also many recently introduced approaches to subgroup analysis that include statistical hypothesis testing of treatment-covariate interactions, prediction of personalized treatment effects via machine learning tree splitting algorithms, etc. do not explicitly address multiplicity issues. In this article, we extend the two–step Bayesian credible subgroups approach to assessment of heterogeneity in treatment effects and multiplicity-adjusted benefiting subgroup identification for zero–inflated count data, which are often encountered in medical and public health studies. Our approach is to conceptualize a zero–inflated Poisson regression …

Studies Toward Provenance Determination For Indigo Dyes, Erin Kibby

Undergraduate Honors Thesis Projects

Species of indigo-producing plants have been used to color textiles for thousands of years all over the globe. Natural indigo-producing species have historically been harvested in regions of Asia, North Africa, and North and South America. This study is an exploration of methods that can be used to determine the provenance (origin) of the indigo dye in a textile through the extraction and isolation of indigoids, flavonoids, and other compounds from the natural dyestuff. There is no accepted method of extracting flavonoids from indigo-dyed textiles specifically, and there is little investigation of the regionally different species. If a method is …

An Examination Of The Impacts Of Beaver Dam Mimicry Structures On Groundwater Surface-Water Interactions In Lower Mountain Riparian Systems, Mercedes D. Salazar

Graduate Theses & Non-Theses

Beaver dam analogs (BDAs) are a low cost, low disturbance stream restoration technique that may improve surface-water/groundwater interactions and wetland connectivity. BDAs are intended to imitate the effects of natural beaver dams by slowing stream velocity, promoting infiltration, increasing dry-season streamflow, aggrading the streambed, and capturing organic matter and other nutrients. This study was conducted to evaluate the degree to which these objectives were being met at a study site on Perkins Gulch, southwest Montana, USA. The Perkins Gulch study area can be summarized by four gauging sites that separate three reaches along the creek. By detailing background processes and …

Syllabus Geo101, Yuri Gorokhovich

Open Educational Resources

Syllabus for courses Dynamic Earth (undergraduate course): GEO 101-81 and Earth Processes (graduate course): GEO 501-81. Open textbook used in both courses linked in the syllabus and available at the following link: https://pressbooks.cuny.edu/gorokhovich/

Quality Control: Potomac Riverkeeper V. Wheeler & Standards For Qualitative Citizen Water Quality Data In Virginia, Jacqueline Goodrum

William & Mary Environmental Law and Policy Review

This Article explores the issue of quality of citizen data through the lens of Potomac Riverkeeper v. Wheeler, a recent impaired waters listing case concerning the Shenandoah River in Virginia. Part I of this Article provides a brief overview of citizen science data in regulation and policymaking under the CWA. Part II discusses Potomac Riverkeeper v. Wheeler, examining Virginia’s water quality-related data standards and DEQ’s use (and non-use) of citizen water quality-related data and information in that case. Finally, Part III argues that Virginia should establish clear, reasonable, and specific data quality standards for qualitative citizen data so …

Stuck In The Net: Promoting Global Shark And Ray Populations Through National Sustainability Import Laws, Kelsey Peden

William & Mary Environmental Law and Policy Review

Shark and ray populations are crucial to a healthy oceanic ecosystem, but regulation of harm is difficult to manage for these highly migratory species. The massive decline of shark and ray populations has triggered an international response, including collaborative protections against the overharvest and sale of endangered groups. However, recent studies show that protections must extend past direct harvest because an estimated thirty to fifty percent of population kills occur through “accidental by-catch” in the fishing process. The United States has attempted to fill some of the missing protections for sharks in national waters, as well as to implement bans …

Casting Pearls Before Swine: Why The Public's Darling Right To Pollute Should Have Been Overturned In Recent Scova Decision, Thummim Park

William & Mary Environmental Law and Policy Review

This Note calls for the Virginia Supreme Court to recognize that a city’s right to freely pollute the public waterways is no longer valid under the Virginia Constitution, and to recognize that the line of Darling cases granting municipalities the public right to pollute waterways should have been overturned.

Part I will set out the foundation for this Note. It will discuss the background of Johnson v. City of Suffolk, laying the context for this Note’s discussion. Part II will engage in an analysis of the rationale for Darling. It will contextualize and compare it to current understandings …

Encouraging Sustainable Innovation: Is There Room For A Post-Grant Environmental Challenge In American Patent Law?, Samuel Habein

William & Mary Environmental Law and Policy Review

This Note examines potential changes within the American patenting system that might renew the U.S. Patent and Trademark Office’s (“USPTO”) dedication to the promotion of progress through a post-grant environmental challenge to patents. There are many ways to encourage “green” innovation by challenging practices that harm the environment, but the patent system has a unique ability to discourage environmentally harmful innovation by refusing to grant exclusionary rights—rights that many industries require to thrive. However, a post-grant environmental challenge would undoubtedly disrupt the American patent system in severe ways that this Note does not address. Therefore, this Note is not arguing …

Vertical Take-Off And Landing Control Via Dual-Quaternions And Sliding Mode, Joshua Sonderegger

Doctoral Dissertations and Master's Theses

The landing and reusability of space vehicles is one of the driving forces into renewed interest in space utilization. For missions to planetary surfaces, this soft landing has been most commonly accomplished with parachutes. However, in spite of their simplicity, they are susceptible to parachute drift. This parachute drift makes it very difficult to predict where the vehicle will land, especially in a dense and windy atmosphere such as Earth. Instead, recent focus has been put into developing a powered landing through gimbaled thrust. This gimbaled thrust output is dependent on robust path planning and controls algorithms. Being able to …

Simplified Ranking Model For The College Football Playoff Through Weighted Ranking, Edward Buckhouse

Senior Theses

This research project looks to create a better system to rank college football teams in playoff contention. It uses surveys of coaches to create a weighted guideline to evaluate wins and losses for each team. This constructs a value for adjusted wins that is based on coaches’ data but strays away from the inherent bias that any single coach would have when ranking teams. The resulting Top 25 were then compared to the College Football Playoff final regular season rankings to gauge the success of the new system. The Adjusted Wins system that was established properly picked 13 out of …

Superfund And Society Benumbed: An In-Depth Look At Environmental Justice In South Carolina, Sydney A. Hampton

Senior Theses

This thesis investigates the relationship between superfund sites in minority communities and their public health through the lens of social vulnerability. Various demographic parameters were used to assess the risk associated with minority communities and exposure to hazardous waste. After investigating the history of the Environmental Justice movement, three superfund sites of interest in South Carolina, and demographic and public health data; each community was analyzed to determine association between exposure to hazardous waste and minority status. Each examined community exhibited characteristics contributing to heightened social vulnerability, potentially causing increased susceptibility to negative health outcomes from exposure to hazardous waste.

The Influence Of Particle Concentration And Bulk Characteristics On Polarized Oceanographic Lidar Measurements, Brian L. Collister, Richard C. Zimmerman, Charles I. Sukenik, William M. Balch, Victoria J. Hill

OES Faculty Publications

Oceanographic lidar measurements of the linear depolarization ratio, δ, contain information on the bulk characteristics of marine particles that could improve our ability to study ocean biogeochemistry. However, a scarcity of information on the polarized light-scattering properties of marine particles and the lack of a framework for separating single and multiple scattering effects on δ have hindered the development of polarization-based retrievals of bulk particle properties. To address these knowledge gaps, we made single scattering measurements of δ for several compositionally and morphologically distinct marine particle assemblages. We then used a bio-optical model to explore the influence of multiple …

European Starling Use Of Nest Boxes Relative To Human Disturbance, Bradley Blackwell, Bruce N. Buckingham, Morgan B. Pfeiffer

United States Department of Agriculture Wildlife Services: Staff Publications

gars and to engine and flight surfaces of moored aircraft. We questioned whether consistent removal of nest material would negatively affect use of a nest site, measured by a reduction in material accumulation. We conducted our study on a 2,200-ha site in Erie County, Ohio, USA (41° 22’ N, 82° 41’ W), from April 15 through June 2, 2020. We used 120 wooden nest boxes on utility poles, protected by an aluminum predator guard below the box. Our treatments included (1) twice weekly, repeated nest material removal (RMR; n = 40 nest boxes); (2) complete nest removal, but only after …

Application Of The Test For Memristor To Experimental Memory Devices, Jinsun Kim

Theses and Dissertations

In early seventies, the memristor was introduced as the fourth fundamental nonlinear two-terminal circuit element coupling the charge and flux by Dr. L. Chua. In 2008, the experimental discovery of the memristor was announced triggering significant interest in the development of resistance switching memory devices and their applications. According to Chua, the pinched hysteresis loop in the current-voltage characteristic of experimental memory devices is the fingerprint of memristors (“if it’s pinched it’s a memristor”). However, such loops are not an exclusive feature of memristors as they are also found in the response of other devices with memory that are not …

A Comparison Of Inference Methods In High-Dimensional Linear Regression, Imtiaz Ebna Mannan

Theses and Dissertations

Building confidence/credible intervals for the high-dimensional (p >> n) linear models have been the subject of exploration for many years. In this paper, we explore three specific setups. First, we look at the Bayesian paradigm for the LASSO model. A double-exponential prior has been applied to the regression coefficient and from that, a posterior distribution is derived to get the necessary quantiles to calculate the credible intervals for the regression coefficients. Second, we explore the de-sparsified LASSO estimates, and using its asymptotic normality, we calculate the confidence intervals for the model coefficients. Finally, we incorporate an adaptive LASSO model. To …

The Existence And Quantum Approximation Of Optimal Pure State Ensembles, Ryan Thomas Mcgaha

Theses and Dissertations

In this manuscript we study entanglement measures defined via the convex roof construction. In the first chapter we build the notion of an entanglement measure from the ground up and discuss various issues that arise when trying to measure the amount of entanglement present in an arbitrary density operator. Through this introduction we will motivate the use of the convex roof construction. In the second chapter we will show that the infimum in the convex roof construction is achieved for a specific set of entanglement measures and provide canonical examples of such measures. We also describe LOCC operations via a …

Concurrent Identification, Characterization, And Reconstruction Of Protein Structure And Mixed-Mode Dynamics From Rdc Data Using Redcraft, Hanin Rafiq Omar

Theses and Dissertations

A complete understanding of the structure-function relationship of proteins requires an analysis of their dynamic behaviors and the static structure. However, all current approaches to studying dynamics in proteins have their shortcomings. A conceptually attractive and alternative approach simultaneously characterizes a protein's structure and its intrinsic dynamics⁠. Ideally, such an approach could solely rely on RDC data-carrying both structural and dynamical information. The major bottleneck in utilizing RDC data in recent years has been attributed to a lack of RDC analysis tools capable of extracting the pertinent information embedded within this complex data source.

Here we present a comprehensive strategy …

Graph Neural Network And Phylogenetic Tree Construction, Gaofeng Pan

Theses and Dissertations

Deep Learning had been widely used in computational biology research in past few years. A great amount of deep learning methods were proposed to solve bioinformatics problems, such as gene function prediction, protein interaction classification, drug effects analysis, and so on; most of these methods yield better solutions than traditional computing methods. However, few methods were proposed to solve problems encountered in evolutionary biology research. In this dissertation, two neural network learning methods are proposed to solve the problems of genome location prediction and median genome generation encountered in phylogenetic tree construction; the ability of neural network learning models on …

Quantifying The Controls Of Shear-Coupled P-Waves, Jackson Saftner

Theses and Dissertations

Shear-coupled P-waves have been shown to possess great utility in resolving crustal and upper mantle models, however these phases remain largely untapped due to their ephemeral nature. Shear-coupled P-waves are a type of seismic phase that undergo S-to-P conversion either at the free-surface or at the base of the crust. Under the proper conditions, it is possible for the converted crustal P phases to achieve total internal reflection, allowing these phases to remain large in amplitude and sample long segments of the crust. In this study, we use a combination of real-world observations collected from literature, and synthetic seismograms, to …

Modification Of Active Sites In Catalytic Materials For Gas-Phase Heterogeneous Catalysis, Deependra Man Shakya

Theses and Dissertations

Heterogeneous catalysis remains at the core of chemical manufacturing industries with 80-90 % of chemical processes relying on the use of catalysts. Unlike homogeneous catalyst that has extremely well-defined active sites, active sites in heterogeneous catalysis are complex and show dynamic behavior under reaction conditions, and change their structures, composition, particle size. The complexity associated with these systems has made the rational design of the catalyst a difficult problem. Highly crystalline metalorganic frameworks (MOFs) as heterogeneous catalysts present the unique opportunity to systematically modify the geometries, ensemble sizes, and compositions of highly dispersed active sites due to their tailorable, and …

Results On Select Combinatorial Problems With An Extremal Nature, Stephen Smith

Theses and Dissertations

This dissertation is split into three sections, each containing new results on a particular combinatorial problem. In the first section, we consider the set of 3-connected quadrangulations on n vertices and the set of 5-connected triangulations on n vertices. In each case, we find the minimum Wiener index of any graph in the given class, and identify graphs that obtain this minimum value. Moreover, we prove that these graphs are unique up to isomorphism.

In the second section, we work with structures emerging from the biological sciences called tanglegrams. In particular, our work pertains to an invariant of tanglegrams called …

Predicting Lower Body Soft Tissue Injuries In American Football With Gps Data, Nicholas Tice

Theses and Dissertations

It is of utmost importance to sports organizations that they keep their players as healthy as possible and contributing to the success of the team. Advancements in technology and investments by sports clubs have allowed researchers to better understand the role of load management in high-level athletes to mitigate injury risk. Through GPS tracking data provided by a collaborating Division I American college football team, we seek to predict lower body soft tissue injuries in future training sessions and reduce the number of potentially avoidable injuries within the organization. The difficulty of analyzing the injury data set is that the …

Some Properties And Applications Of Spaces Of Modular Forms With Eta-Multiplier, Cuyler Daniel Warnock

Theses and Dissertations

This dissertation considers two topics. In the first part of the dissertation, we prove the existence of fourteen congruences for the $p$-core partition function of the form given by Garvan in \cite{G1}. Different from the congruences given by Garvan, each of the congruences we give yield infinitely many congruences of the form $$a_p(\ell\cdot p^{t+1} \cdot n + p^t \cdot k - \delta_p) \equiv 0 \pmod \ell.$$ For example, if $t \geq 0$ and $\sfrac{m}{n}$ is the Jacobi symbol, then we prove $$a_7(7^t \cdot n - 2) \equiv 0 \pmod 5, \text{ \ \ if $\bfrac{n}{5} = 1$ and $\bfrac{n}{7} = …

Adsorption Of Microcystins To Sediment Affects Their Bioavailability And Remediation, Ashley Womer

Theses and Dissertations

The freshwater harmful algae Microcystis spp produces a family of toxins called microcystins1. These species of algae are known to release microcystins from their cells directly into the surrounding water2. This creates an array of human health risks depending on the fate and transport of the toxins in the water column3,4. Risk modelling and previous literature has shown that sediment is a sink for free microcystin, microcystin can be stably adsorbed to sediment for hundreds of years, and its adsorption to sediment is determined by the sediment adsorption partitioning coefficient (Kd)5,6,7. In this work it is hypothesized that the sediment …

On Providing Efficient Real-Time Solutions To Motion Planning Problems Of High Complexity, Marios Xanthidis

Theses and Dissertations

The holy grail of robotics is producing robotic systems capable of efficiently executing all the tasks that are hard, or even impossible, for humans. Humans, undoubtedly, from both a hardware and software perspective, are extremely complex systems capable of executing many complicated tasks. Thus, the complexity of many state-of-the-art robotic systems is also expected to progressively increase, with the goal to match or even surpass human abilities. Recent developments have emphasized mostly hardware, providing highly complex robots with exceptional capabilities. On the other hand, they have illustrated that one important bottleneck of realizing such systems as a common reality is …

The Role Of Physical Geographic Features In Video Games, Dexter Ferguson

Theses

This thesis examines how physical geographic features affect individuals when interacting with video game environments. There are very few studies on the geography of video games. I aim to bridge the gap between game studies and geography, a naturally occurring link. The observation of elements such as the geography of an area is critical when exploring an individual’s perception of a video game environment. Individuals interact with the geography of their location on a day-to-day basis, whether it be physical or human geography; how they can relate a video game’s geography to the real world dramatically affects their immersion. An …

Safe Water For All: A Multi-Modal Approach To North Alabama's Water Resources, Elijah Walker

Theses

Environmental degradation is a destructive force produced by the human disturbance of pollution. It is a phenomenon that gradually evolves landscapes over time resulting in irreversible outcomes. Environmental degradation physically affects spaces’ resources, objects, and inhabiting humans. This study observes the impacts of pollution beyond physical boundaries and how it affects human identity/sense of place through the utilization of geographic information systems. Specifically, it examines cultural identity developed through human experiences and connections to landscapes containing water resources. Following, pollution contaminates water resources disrupting experiences and connections thus causing the cultural identity to disappear. The case study applied to this …

The Mineralogy And Geochemistry Of Illinois Basin Paleosols: Recognizing Detrital, Pedogenic, And Diagenetic Minerals, Julia A. Mcintosh

Earth Sciences Theses and Dissertations

The geochemical compositions of minerals in paleosols are assumed to be homogenous and attained through chemical weathering processes during episodes of pedogenesis in the geologic past. As such, the geochemical composition of minerals from paleosols may be used to reconstruct ancient climates and environments. One problem with this assumption is that paleosols were initially clastic sedimentary rocks or substrate prior to pedogenesis, thus it is likely that some portion of the paleosol is still composed of detrital minerals. Secondly, conditions may change in a sedimentary basin as the basin is buried and later uplifted, potentially triggering new mineralization or transformation …