Physical Sciences and Mathematics Commons^™

Plasma N6 Polyunsaturated Fatty Acid Levels And Risk For Dementia: A Prospective Observational Study From The United Kingdom Biobank, Aleix Sala-Vila, Nathan Tintle, Jason Westra, Evan Dejong, Tom J. Clark, Paige Miller, Martha A. Belury, William S. Harris

Faculty Work Comprehensive List

Background

Some recent observational studies have linked higher blood linoleic acid (LA) concentration with lower risk of cardiometabolic diseases. However, these associations have not been observed for other n-6 polyunsaturated fatty acids (PUFAs), which, in some settings, have been linked to higher disease risk, and thus the controversy over the health effects of n-6 PUFAs remains. Dementia is a paradigmatic case of it.

Objectives

To investigate the association of LA and non-LA n-6 PUFAs with the risk of incident dementia.

Methods

We included 273,795 participants from the UK Biobank free of dementia at baseline for whom plasma n-6 PUFAs data …

Aiw26s: Machine Learning Of Structured Data, Moumita Saha

Paul English Applied Artificial Intelligence (AI) Institute Publications

This workshop introduces the fundamentals of machine learning for structured data, focusing on tabular datasets and real-world applications. Participants explore key concepts such as data types, data preprocessing, feature engineering, and supervised learning methods. The session covers commonly used models, including linear regression, logistic regression, decision trees, and neural networks, along with evaluation metrics such as RMSE, accuracy, and confusion matrices. By the end of the workshop, participants will have gained a practical understanding of how to build, interpret, and evaluate machine learning models for structured data.

Semat: Semantic Enhanced Natural Image Interactive Matting, Ruihao Xia, Yu Liang, Peng-Tao Jiang, Hao Zhang, Qianru Sun, Yang Tang, Bo Li, Pan Zhou

Research Collection School Of Computing and Information Systems

Recent approaches attempt to adapt powerful interactive segmentation models, such as SAM, to interactive matting and fine-tune the models based on synthetic matting datasets. However, models trained on synthetic data fail to generalize to complex and occlusion scenes. We address this challenge by proposing a new matting dataset based on the COCO dataset, namely COCO-Matting. It selects real-world complex images from COCO and converts semantic segmentation masks to matting labels. The built COCO-Matting comprises an extensive collection of 36,980 human instance-level alpha mattes in complex natural scenarios. Furthermore, existing SAM-based matting methods extract intermediate features and masks from a frozen …

Bridging Bug Localization And Issue Fixing: A Hierarchical Localization Framework Leveraging Large Language Models, Jianming Chang, Xin Zhou, Lulu Wang, David Lo, Bixin Li

Research Collection School Of Computing and Information Systems

Automated issue fixing is a critical task in software debugging and has recently garnered significant attention from academia and industry. However, existing fixing techniques predominantly focus on the repair phase, often overlooking the importance of improving the preceding bug localization phase. As a foundational step in issue fixing, bug localization plays a pivotal role in determining the overall effectiveness of the entire process. To enhance the precision of issue fixing by accurately identifying bug locations in large-scale projects, this paper presents BugCerberus, the first hierarchical bug localization framework powered by three customized large language models. First, BugCerberus analyzes intermediate representations …

Trade Liberalization Under Safta And Bimstec: Evidence From A Cge-Gtap Case Study Of A Small Open Economy, Gita Bhushal, Pankaj Lal

Department of Earth and Environmental Studies Faculty Scholarship and Creative Works

Regional trade liberalization via preferential agreements increasingly shapes economic outcomes in small open economies embedded in overlapping regional frameworks. This study evaluates the short-run economy-wide effects of tariff and non-tariff measure (NTM) reforms under the South Asian Free Trade Area (SAFTA) and the Bay of Bengal Initiative for Multi-Sectoral Technical and Economic Cooperation (BIMSTEC) using a Computable General Equilibrium (CGE) model calibrated to the GTAP 10 database. Gravity-based estimates of ad valorem equivalents (AVEs) of NTMs are integrated into the CGE framework, enabling explicit modeling of regulatory barriers alongside tariff reductions. Policy simulations examine scenarios involving a 90 percent tariff …

Scenarioxp: A Complete Scenario-Based Testing Framework For The Exploration And Exploitation Of Autonomous Vehicle Validation Scenarios, Quentin Goss

Doctoral Dissertations and Master's Theses

Today is an age of exciting emerging technology where cutting-edge research in autonomous vehicles (AVs) reduces the active human participation in driving and extends awareness beyond human limitations of perception and reaction, improving driving safety and quality of the user experience as a result. The ever-increasing complexity of these autonomous systems poses many challenges towards the validation and verification (V\&V) of these complex systems under time and resource constraints, as the use of artificial intelligence and also the intricacy of the operating environment means that these systems are also black-box and non-deterministic. Scenario-based V\&V testing of such systems, which involves …

Study Of Output And Behavior Of Llms Using Confidence Framing In Prompt Engineering, Micah Parrilla

Doctoral Dissertations and Master's Theses

While prompt engineering is pivotal for shaping Large Language Model (LLM) outputs, the impact of confidence framing on behavioral calibration remains underexplored. This study investigates the ways in which psychological framing, utilizing techniques such as capability praise, role amplification, and doubt induction, affects linguistic tone, objective accuracy, and internal calibration. A 1,080-trial experimental matrix evaluated six diverse models across factual, logical, coding, and cyber security domains. Analysis using the Kruskal-Wallis H-test revealed highly significant behavioral shifts across all measured dimensions, providing conclusive evidence that the applied frames exert a substantial influence on model performance.

The findings identify a distinct cognitive …

Low-Complexity Structured Neural Networks And Their Usage In Image And Signal Processing, Adam Kuzmicki

Doctoral Dissertations and Master's Theses

Conventional neural networks face significant challenges due to high computational costs, large parameter counts, and reliance on backpropagation, which restricts their application in resource-constrained and real-time settings. To address these challenges, this thesis proposes three structured neural network (NN) architectures grounded in the theories of sparse and self-contained factorizations of transforms, with applications to image compression, reconstruction, classification, encryption, and also adaptive wideband multi-beam beamforming. The first neural network architecture, named DCTrix-Net, replaces conventional spatial con- volution with highly sparse factorization of the discrete Cosine transform (DCT) complemented by Toeplitz-structured weight initialization, achieving at least 97% FLOP reduction over CNNs, …

Information Theory Analysis Of The Solar Wind Magnetic Structures For Space Weather Prediction, Katherine Holland

Doctoral Dissertations and Master's Theses

Forecasting space weather at Earth is highly complicated, because of the limited measurements of the dynamic processes in the Sun that span multiple temporal, spatial, and energy-scales. The solar wind is a highly structured, multi-scale, evolving plasma and consists of coronal mass ejections (CMEs), stream interaction regions (SIRs), expanding flux tubes (Borovsky, 2008), and interplanetary magnetic field (IMF) discontinuities and fluctuations. The aim of this research is to improve our understanding of the evolution and dissipation of different scale-size solar wind magnetic structures as they move from the Sun-Earth Lagrange point 1 (L1) to Earth's bow shock and, ultimately, to …

Time-Correlated Photons From Spontaneous Parametric Down-Conversion (Spdc), Aaron Dubois , ‘26, Tanvir Islam , ‘26, Prashan Thapa Magar , ‘26

Senior Theses, Projects, and Awards

Time-correlated photons can be used to demonstrate emerging technical applications such as ghost imaging, and they can demonstrate quantum-based phenomena in order to interest undergraduate students in engineering applications involving optics and quantum mechanics. In this work, we use spontaneous parametric down-conversion to generate time-correlated photons. To achieve this, we simulated laboratory parameters with MATLAB and designed optical and electrical setups. Specifically, we used a 405 nm diode laser, various common optical components, and a nonlinear crystal designed to generate time-correlated photons, and we used single-photon detectors, time-to-amplitude converters, custom flash-conversion analog-to-digital converters, a Teensy 4.1 microcontroller, and the Arduino …

Modeling And Constraining Beyond Standard Model Neutrino Self-Interactions, Sabrina Hanning , ‘26

Senior Theses, Projects, and Awards

Neutrinos are the ideal subject for theories of Beyond Standard Model (BSM) physics. This is because small neutrino interaction cross-sections make them incredibly difficult to detect and result in many open questions regarding neutrino properties, particularly those that do not fit nicely into the Standard Model of particle physics, such as the existence of neutrino masses. BSM neutrino self-interactions are an interesting possibility with connections to dark matter candidates, neutrino mass generation, and in general any measurement that relies on accurate modeling of incident astrophysical neutrino flux.

These self-interactions may take various forms, with different mediator particles; we present a …

Unraveling The Intractable Trilemma In Urban Weather And Climate Modeling, Peiyuan Li, Ashish Sharma, Rao Kotamarthi, Alberto Martilli, Subimal Ghosh, Cristina Negri, Scott Collis, Lee Chapman, Fei Chen, Luis M. A. Bettencourt, Winston T. L. Chow

Research Collection College of Integrative Studies

Urban weather and climate modeling is constrained by the highly heterogeneous and dynamic nature of cities. It exhibits a persistent trilemma between spatial granularity, spatiotemporal coverage, and physical interpretability. We articulate this challenge and propose a hybrid framework that integrates physics -based models, urban observations, and machine learning. Framing urban modeling as an integration problem across methods and scales, we provide a structured guide for next -generation, decision -relevant urban climate capabilities.

Structural Silence: When Ai Infrastructure Fails Speakers Of Underrepresented Languages, Avijit Roy, Proma Roy

Publications and Research

Artificial intelligence tools for education and language support are increasingly framed as scalable responses to access gaps in under-resourced communities. Yet the infrastructure underlying these tools—training corpora, tokenization schemes, evaluation benchmarks, and deployment architectures—encodes a set of assumptions that systematically disadvantages speakers of underrepresented languages before a single model is trained. This paper examines those assumptions through the lens of Bengali, one of the world’s most widely spoken languages with roughly 285 million speakers (Ethnologue, 2025; International Communication and Leadership School, 2026), and the structural barriers that emerge when attempting to build AI-assisted educational tools for Bengali-speaking learners in low-connectivity …

Watersmart Farms - Desalination: Community Desalination, Sharmina Begum, Wendell Ela, John K. Ruprecht

Natural resources commissioned reports

The Wheatbelt is a vast agricultural region in southwestern Western Australia, covering approximately 25 million hectares, of which 17 million are cleared. It is a key contributor to the state’s economy, supporting broadacre grain production, livestock (such as sheep, beef, and pigs) grazing, mixed farming, and numerous small rural communities. However, decades of extensive land clearing for agriculture have significantly altered the natural hydrological balance. These changes have disrupted local water cycles, increased recharge post-clearing, increased evaporation, and contributed to widespread soil salinity.

Compounding these land-use impacts, the region has also experienced a long-term drying trend due to climate change. …

Weakly Supervised Video Anomaly Detection And Localization With Spatio-Temporal Prompts, Peng Wu, Xuerong Zhou, Guansong Pang, Zhiwei Yang, Qingsen Yan, Peng Wang, Yanning Zhang

Research Collection School Of Computing and Information Systems

Current weakly supervised video anomaly detection (WSVAD) task aims to achieve frame-level anomalous event detection with only coarse video-level annotations available. Existing works typically involve extracting global features from full-resolution video frames and training frame-level classifiers to detect anomalies in the temporal dimension. However, most anomalous events tend to occur in localized spatial regions rather than the entire video frames, which implies existing frame-level feature based works may be misled by the dominant background information and lack the interpretation of the detected anomalies. To address this dilemma, this paper introduces a novel method called STPrompt that learns spatio-temporal prompt embeddings …

Portrait Shadow Removal Via Self-Exemplar Illumination Equalization, Qian Huang, Cheng Xu, Guiqing Li, Ziheng Wu, Shengxin Liu, Shengfeng He

Research Collection School Of Computing and Information Systems

We introduce the Self-Exemplar Illumination Equalization Network, designed specifically for effective portrait shadow removal. The core idea of our method is that partially shadowed portraits can find ideal exemplars within their non-shadowed facial regions. Rather than directly fusing two distinct classes of facial features, our approach utilizes non-shadowed regions as an illumination indicator to equalize the shadowed regions, generating deshadowed results without boundary-merging artifacts. Our network comprises cascaded Self-Exemplar Illumination Equalization Blocks (SExmBlock), each containing two modules: a self-exemplar feature matching module and a feature-level illumination rectification module. The former identifies and applies internal illumination exemplars to shadowed areas, producing …

Trace: Securing Smart Contract Repository Against Access Control Vulnerability, Chong Chen, Lingfeng Bao, David Lo, Yanlin Wang, Zhenyu Shan, Ting Chen, Guangqiang Yin, Jianxing Yu, Zibin Zheng, Jiachi Chen

Research Collection School Of Computing and Information Systems

Smart contract vulnerabilities have led to billions of dollars in economic losses. Among these, improper Access Control, which allows unauthorized users to execute restricted functions, is particularly prevalent and has caused significant financial damage. Smart contract repositories contain source code, documentation, configuration files, and other artifacts necessary for building and deploying smart contracts. GitHub hosts numerous open-source repositories of this kind, which serve as intermediate artifacts in development and require compilation and packaging to produce deployable contracts. Third-party developers often reference, reuse, or fork code from these repositories during custom development. However, if the referenced code contains vulnerabilities, it can …

Penforge: On-The-Fly Expert Agent Construction For Automated Penetration Testing, Huihui Huang, Jieke Shi, Junkai Chen, Ting Zhang, Yikun Li, Chengran Yang, Eng Lieh Ouh, Lwin Khin Shar, David Lo

Research Collection School Of Computing and Information Systems

Penetration testing is essential for identifying vulnerabilities in web applications before real adversaries can exploit them. Recent work has explored automating this process with Large Language Model (LLM)-powered agents, but existing approaches either rely on a single generic agent that struggles in complex scenarios or narrowly specialized agents that cannot adapt to diverse vulnerability types. We therefore introduce PenForge, a framework that dynamically constructs expert agents during testing rather than relying on those prepared beforehand. By integrating automated reconnaissance of potential attack surfaces with agents instantiated on the fly for context-aware exploitation, PenForge achieves a 30.0% exploit success rate (12/40) …

Stacked From One: Multi-Scale Self-Injection For Context Window Extension, Wei Han, Pan Zhou, Shuicheng Yan

Research Collection School Of Computing and Information Systems

The limited context window of contemporary large language models (LLMs) remains a primary bottleneck for their broader application across diverse domains. Although continual pre-training on long-context data offers a straightforward solution, it incurs prohibitive data acquisition and computational costs. To address this challenge, we propose SHAREDLLM, a novel framework based on multi-grained context compression and query-aware information acquisition. SHAREDLLM comprises two stacked short-context LLMs: a lower model serving as a compressor and an upper model acting as a decoder. The lower model compresses long inputs into compact, multi-grained representations, which are then forwarded to the upper model for context-aware processing. …

Dragging With Geometry: From Pixels To Geometry-Guided Image Editing, Xinyu Pu, Hongsong Wang, Jie Gui, Pan Zhou

Research Collection School Of Computing and Information Systems

Interactive point-based image editing serves as a controllable editor, enabling precise and flexible manipulation of image content. However, most drag-based methods operate primarily on the 2D pixel plane with limited use of 3D cues. As a result, they often produce imprecise and inconsistent edits, particularly in geometry-intensive scenarios such as rotations and perspective transformations. To address these limitations, we propose a novel geometry-guided drag-based image editing method—GeoDrag, which addresses three key challenges: 1) incorporating 3D geometric cues into pixel-level editing, 2) mitigating discontinuities caused by geometry-only guidance, and 3) resolving conflicts arising from multi-point dragging. Built upon a unified displacement …

Dreamcs: Geometry-Aware Text-To-3d Generation With Unpaired 3d Reward Supervision, Xiandong Zou, Ruihao Xia, Hongsong Wang, Pan Zhou

Research Collection School Of Computing and Information Systems

While text-to-3D generation has attracted growing interest, existing methods often struggle to produce 3D assets that align well with human preferences. Current preference alignment techniques for 3D content typically rely on hardly-collected preference-paired multi-view 2D images to train 2D reward models, when then guide 3D generation — leading to geometric artifacts, such as the Janus face problem and geometric incompleteness, due to their inherent 2D bias. To address these limitations, we construct 3D-MeshPref, the first large-scale unpaired 3D preference dataset, featuring diverse 3D meshes annotated by a large language model and refined by human evaluators. We then develop RewardCS, the …

Where Did It Go Wrong? Attributing Undesirable Llm Behaviors Via Representation Gradient Tracing, Zhe Li, Wei Zhao, Yige Li, Jun Sun

Research Collection School Of Computing and Information Systems

Large Language Models (LLMs) have demonstrated remarkable capabilities, yet their deployment is frequently undermined by undesirable behaviors such as generating harmful content, factual inaccuracies, and societal biases. Diagnosing the root causes of these failures poses a critical challenge for AI safety. Existing attribution methods, particularly those based on parameter gradients, often fall short due to prohibitive noisy signals and computational complexity. In this work, we introduce a novel and efficient framework that diagnoses a range of undesirable LLM behaviors by analyzing representation and its gradients, which operates directly in the model's activation space to provide a semantically meaningful signal linking …

Propaganda Ai: An Analysis Of Semantic Divergence In Large Language Models, Nay Myat Min, Long H. Pham, Yige Li, Jun Sun

Research Collection School Of Computing and Information Systems

Large language models (LLMs) can exhibit concept-conditioned semantic divergence: common high-level cues (e.g., ideologies, public figures) elicit unusually uniform, stance-like responses that evade token-trigger audits. This behavior falls in a blind spot of current safety evaluations, yet carries major societal stakes, as such concept cues can steer content exposure at scale. We formalize this phenomenon and present RAVEN (Response Anomaly Vigilance), a black-box audit that flags cases where a model is simultaneously highly certain and atypical among peers by coupling semantic entropy over paraphrastic samples with cross-model disagreement. In a controlled LoRA fine-tuning study, we implant a concept-conditioned stance using …

Reducing Class-Wise Performance Disparity Via Margin Regularization, Beier Zhu, Kesen Zhao, Jiequan Cui, Qianru Sun, Yuan Zhou, Xun Yang, Hanwang Zhang

Research Collection School Of Computing and Information Systems

Deep neural networks often exhibit substantial disparities in class-wise accuracy, even when trained on class-balanced data—posing concerns for reliable deployment. While prior efforts have explored empirical remedies, a theoretical understanding of such performance disparities in classification remains limited. In this work, we present Margin Regularization for performance disparity Reduction (MR2 ), a theoretically principled regularization for classification by dynamically adjusting margins in both the logit and representation spaces. Our analysis establishes a margin-based, class-sensitive generalization bound that reveals how per-class feature variability contributes to error, motivating the use of larger margins for “hard” classes. Guided by this insight, MR2 optimizes …

Managing Reproducibility Debt In Scientific Software: A Practical Framework, Zara Hassan, Christoph Treude, Graham Williams, Michael Norrish, Alex Potanin

Research Collection School Of Computing and Information Systems

Scientific software includes end-user applications, modelling tools, research software for publications, and production systems for real users. It plays a key role across various scientific disciplines by enabling large-scale computation, simulation, and data analysis. Unlike commercial software, scientific software is often developed in dynamic research environments with limited engineering practices, documentation, or testing. This makes it fragile and difficult to reproduce results, even when code and data are available, conditions in which Reproducibility Debt (RpD) accumulates. This paper presents the Reproducibility Debt Management Framework (RpD-MF), which is grounded in evidence from a systematic literature review, practitioner interviews, and a global …

Real-Time Motion-Controllable Autoregressive Video Diffusion, Kesen Zhao, Jiaxin Shi, Beier Zhu, Junbao Zhou, Xiaolong Shen, Yuan Zhou, Qianru Sun, Hanwang Zhang

Research Collection School Of Computing and Information Systems

Real-time motion-controllable video generation remains challenging due to the inherent latency of bidirectional diffusion models and the lack of effective autoregressive (AR) approaches. Existing AR video diffusion models are limited to simple control signals or text-to-video generation, and often suffer from quality degradation and motion artifacts in few-step generation. To address these challenges, we propose AR-Drag, the first RL-enhanced few-step AR video diffusion model for real-time image-to-video generation with diverse motion control. We first fine-tune a base I2V model to support basic motion control, then further improve it via reinforcement learning with a trajectory-based reward model. Our design preserves the …

Llmqua: Practical Backdoor Injection On Large Language Model Quantization, Xiangxiang Chen, Peixin Zhang, Jun Sun, Jin Song Dong, Wenhai Wang, Jingyi Wang

Research Collection School Of Computing and Information Systems

Quantization is widely used to enable local deployment of large language models (LLMs) on resource-constrained devices. Recent work (e.g., QuRA) shows quantization can be exploited via rounding manipulation to implant backdoors. However, such an attack has been evaluated only on small models and does not directly apply to LLMs due to three key constraints: (1) limited poisoning data from small, task-agnostic calibration sets; (2) layer-wise quantization restricting adversarial access to global representations; and (3) lack of gradient access in quantization pipelines, blocking gradient-based attacks.We propose LLMQuA, a practical quantization-phase backdoor attack tailored to the LLM setting. LLMQuA (i) injects backdoors …

Be Responsible In Your Answers! Monitoring Out-Of-Domain Behaviors In Domain-Specific Llms, Boquan Li, Chenzhe Lou, Zhe Ren, Peixin Zhang, Zirui Fu, Jun Sun, Yaowen Zheng

Research Collection School Of Computing and Information Systems

Large Language Models (LLMs) have accelerated the rapid development of chatbot web applications in various domains, such as coding, biomedicine and psychology. Compared to general LLMs like ChatGPT, domain-specific LLMs require a greater sense of responsibility. For instance, if a programming LLM casually answers medical or psychological questions, it not only misleads the public but also poses legal risks. This highlights new demands for monitoring and preventing such irresponsible behaviors. Existing efforts attempt to monitor LLMs from multiple aspects, such as lying, jailbreaks, and toxic content, while overlooking out-of-domain behaviors. In this work, we propose an innovative LLM domain monitoring …

Prompting Frameworks For Large Language Models: A Survey, Xiaoxia Liu, Jingyi Wang, Jun Sun, Xiaohan Yuan, Guoliang Dong, Peng Di, Wenhai Wang, Dongxia Wang

Research Collection School Of Computing and Information Systems

Since the launch of ChatGPT, a powerful AI Chatbot developed by OpenAI, large language models (LLMs) have made significant advancements in both academia and industry, bringing about a fundamental engineering paradigm shift in many areas. While LLMs are powerful, it is also crucial to best use their power where “prompt” plays a core role. However, the booming LLMs themselves, including excellent APIs like ChatGPT, have several inherent limitations: (1) temporal lag of training data, and (2) the lack of physical capabilities to perform external actions. Recently, we have observed the trend of utilizing prompt-based tools to better utilize the power …

Teamwise: Exploring Virtually Embodied Ai Facilitation For Video-Based Team Onboarding, Venkata Akhila Rani Obilisetty, Mikkeline Elleby, Anthony Tang, April Yi Wang

Research Collection School Of Computing and Information Systems

AI-mediated facilitation has emerged as a scalable approach to supporting onboarding and coordination in newly formed remote teams, yet existing systems are predominantly text-based. To explore how video-based, virtually embodied AI facilitators shape team experiences, we present TeamWise, which joins video-based onboarding meetings as an on-screen avatar. TeamWise guides teams through a structured facilitation flow of low-stakes activities to foster rapport, mutual awareness, and shared identity. While the overall sequence of activities and facilitation goals is predefined, the facilitator’s turn-by-turn utterances are generated dynamically by an LLM in response to participant input. We conducted a formative study of TeamWise to …