Physical Sciences and Mathematics Commons^™

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Thin Sections

No abstract provided.

Mgrre_Thinsections_Mgrre-46_61, Mgrre

Thin Sections

No abstract provided.

Optimizing Lake Okeechobee Watershed Management And Reservoir Operations For Water Quality Improvement, Osama Mahrous Mossad Tarabih

USF Tampa Graduate Theses and Dissertations

Rivers around the globe have been altered as people have constructed water resources infrastructure to store water for different human needs, causing negative impacts on ecosystem processes and functions. Environmental flows have been introduced to restore deteriorated riverine ecosystems; however, environmental flows have not always been practical or adequate to restore environment conditions in rivers globally. Lake Okeechobee is a large subtropical lake that plays a pivotal role in South Florida water system providing various water demands for the surrounding communities as well as providing crucial services to the ecosystem of South Florida. However, hydrologic alterations and nutrient (phosphorus and …

Using Stable Isotope Analyses To Assess The Trophic Ecology Of Scleractinian Corals, Michael P. Lesser, Marc Slattery, Keir J. Macartney

School of Earth, Environmental, & Marine Sciences Faculty Publications

Studies on the trophic ecology of scleractinian corals often include stable isotope analyses of tissue and symbiont carbon and nitrogen. These approaches have provided critical insights into the trophic sources and sinks that are essential to understanding larger-scale carbon and nitrogen budgets on coral reefs. While stable isotopes have identified most shallow water (<30 m) corals as mixotrophic, with variable dependencies on autotrophic versus heterotrophic resources, corals in the mesophotic zone (~30–150 m) transition to heterotrophy with increasing depth because of decreased photosynthetic productivity. Recently, these interpretations of the stable isotope data to distinguish between autotrophy and heterotrophy have been criticized because they are confounded by increased nutrients, reverse translocation of photosynthate, and changes in irradiance that do not influence photosynthate translocation. Here we critically examine the studies that support these criticisms and show that they are contextually not relevant to interpreting the transition to heterotrophy in corals from shallow to mesophotic depths. Additionally, new data and a re-analysis of previously published data show that additional information (e.g., skeletal isotopic analysis) improves the interpretation of bulk stable isotope data in determining when a transition from primary dependence on autotrophy to heterotrophy occurs in scleractinian corals.

Functional Consequences Of Extended High Frequency Hearing Impairment: Evidence From The Speech, Spatial, And Qualities Of Hearing Scale, Udit Saxena, Srikanta K. Mishra, Hansapani Rodrigo, Moumita Choudhury

School of Mathematical & Statistical Sciences Faculty Publications

Hearing loss in the extended high frequencies, despite a normal audiogram, could affect speech-in-noise recognition. However, it is not known if extended high frequency (EHF) hearing loss is associated with everyday listening and communication deficits. The present study aimed to determine the functional effects of impaired EHF hearing among adults using the Speech, Spatial, and Qualities of Hearing Scale (SSQ). A secondary objective was to evaluate the relationship between objective (speech-in-noise recognition) and subjective (SSQ) measures of hearing function. Listeners with EHF hearing loss provided lower SSQ ratings compared with their EHF-normal counterparts. The lower ratings could not be attributed …

Unoapi: Balancing Performance, Portability, And Productivity (P3) In Hpc Education, Konstantin Laufer, George K. Thiruvathukal

Computer Science: Faculty Publications and Other Works

oneAPI is a major initiative by Intel aimed at making it easier to program heterogeneous architectures used in high-performance computing using a unified application programming interface (API). While raising the abstraction level via a unified API represents a promising step for the current generation of students and practitioners to embrace high- performance computing, we argue that a curriculum of well- developed software engineering methods and well-crafted exem- plars will be necessary to ensure interest by this audience and those who teach them. We aim to bridge the gap by developing a curriculum—codenamed UnoAPI—that takes a more holistic approach by looking …

Extracellular Dnases Facilitate Antagonism And Coexistence In Bacterial Competitor-Sensing Interference Competition, Aoi Ogawa, Christophe Golé, Maria Bermudez, Odrine Habarugira, Gabrielle Joslin, Taylor Mccain, Autumn Mineo, Jennifer Wise, Julie Xiong, Katherine Yan, Jan A.C. Vriezen

Biological Sciences: Faculty Publications

Over the last 4 decades, the rate of discovery of novel antibiotics has decreased drastically, ending the era of fortuitous antibiotic discovery. A better understanding of the biology of bacteriogenic toxins potentially helps to prospect for new antibiotics. To initiate this line of research, we quantified antagonists from two different sites at two different depths of soil and found the relative number of antagonists to correlate with the bacterial load and carbon-to-nitrogen (C/N) ratio of the soil. Consecutive studies show the importance of antagonist interactions between soil isolates and the lack of a predicted role for nutrient availability and, therefore, …

Statistical Methods For Differential Gene Expression Analysis Under The Case-Cohort Design, Lidong Wang

Mathematics & Statistics ETDs

Differential gene expression analysis has the potential to discover candidate biomarkers, therapeutic targets, and gene signatures. How to save money when using an unaffordable sample is a practical question. The case-cohort (CCH) study design can blend the economy of case-control studies with the advantages of cohort studies. But it has not been seen in the medical research literature where high-throughput genomic data were involved.

A score test does not need to fit the Cox PH model iteratively; hence, it can save computing time and avoid potential convergence issues. We developed a score test under the CCH design to identify DEGs …

The Evolving Privacy And Security Concerns For Genomic Data Analysis And Sharing As Observed From The Idash Competition, Tsung-Ting Kuo, Xiaoqian Jiang, Haixu Tang, Xiaofeng Wang, Arif Harmanci, Miran Kim, Kai Post, Diyue Bu, Tyler Bath, Jihoon Kim, Weijie Liu, Hongbo Chen, Lucila Ohno-Machado

Faculty, Staff and Student Publications

Concerns regarding inappropriate leakage of sensitive personal information as well as unauthorized data use are increasing with the growth of genomic data repositories. Therefore, privacy and security of genomic data have become increasingly important and need to be studied. With many proposed protection techniques, their applicability in support of biomedical research should be well understood. For this purpose, we have organized a community effort in the past 8 years through the integrating data for analysis, anonymization and sharing consortium to address this practical challenge. In this article, we summarize our experience from these competitions, report lessons learned from the events …

I-Climate: A “Clinical Climate Informatics” Action Framework To Reduce Environmental Pollution From Healthcare, Dean F Sittig, Jodi D Sherman, Matthew J Eckelman, Andrew Draper, Hardeep Singh

Faculty, Staff and Student Publications

Addressing environmental pollution and climate change is one of the biggest sociotechnical challenges of our time. While information technology has led to improvements in healthcare, it has also contributed to increased energy usage, destructive natural resource extraction, piles of e-waste, and increased greenhouse gases. We introduce a framework "Information technology-enabled Clinical cLimate InforMAtics acTions for the Environment" (i-CLIMATE) to illustrate how clinical informatics can help reduce healthcare's environmental pollution and climate-related impacts using 5 actionable components: (1) create a circular economy for health IT, (2) reduce energy consumption through smarter use of health IT, (3) support more environmentally friendly decision-making …

Extension Of Fundamental Transversals And Euler’S Polyhedron Theorem, Joy Marie D'Andrea

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Solving Mathematical Epidemiology Models Via Neural Nets Tuned By Mesh Adaptive Direct Search, Muhammad Jalil Ahmad

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

A Quantum Mechanics Approach To Modeling The Dynamics Of Gene Regulatory Networks And A Susceptible/Infectious (Si) Population, Leon Arriola

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

A Quantum Mechanics Approach To Modeling The Dynamics Of Gene Regulatory Networks And A Susceptible/Infectious (Si) Population, Leon Arriola

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Solving Clostridioides Difficile: Mathematical Models Of Transmission And Control In Healthcare Settings, Cara Sulyok, Max Lewis, Laila Mahrat, Brittany Stephenson, Malen De La Fuente Arruabarrena, David Kovalev, Justyna Sliwinska

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Evaluation Of Circular Logistic Regression Models With Asymmetrical Link Functions, Feridun Tasdan

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Substrate Transport In Cylindrical Multi-Capillary Beds With Axial Diffusion, Liang Sun, Eric Choi

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

An Implementation Of The Method Of Moments On Chemical Systems With Constant And Time-Dependent Rates, Emmanuel Adara

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Physics-Informed Neural Networks For Informed Vaccine Distribution In Heterogeneously Mixed Populations, Alvan Arulandu, Padmanabhan Seshaiyer

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Comparison Of Assessment And Teaching Modalities For A Quantitative Biology Course, Dmitry Kondrashov

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

A Mathematical Model For Understanding And Predicting Dynamics Of Depression As An Epidemic, Bianca Linares

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Humanizing Mathematical Biology Research And Education, Carrie Diaz Eaton, Ognyan Simeonov

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Modeling Our World With Mathematics: Incorporating Math Modeling Into A General Education Curriculum, Brittany Stephenson

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

The Effect Of Vaccine Misinformation On Disease Spread, Anthony Delegge, Yina Wang

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

Seismic Activity And Flooding Of Hard Coal Mines In The Ostrava-Karvina Coalfield, Petr Konicek, Eva Jirankova, Vlastimil Kajzar, Jan Schreiber, Pavel Malucha, Kristyna Schuchova

Journal of Sustainable Mining

The termination of mining activities often results in post-mining problems and risks. One of these issues is the flooding of mines. Long-term mining in the Ostrava and Petrvald sub-basins in the Upper Silesian Coal Basin finished in 1994. Tens of coal seams were mined here, and the depth of mining reached more than 1000 m below the surface. Flooding of the Ostrava sub-basin started in 1994. The Ostrava and Petrvald sub-basins were flooded from one half only to prevent water from flooding into the Karvina sub-basin, where mining continued. The continual pumping of water has been carried out ever since. …

Numerical Modelling Of Destress Blasting – A State-Of-The-Art Review, Shuting Miao, Petr Konicek, Peng-Zhi Pan, Hani Mitri

Journal of Sustainable Mining

As a proactive mine safety measure against the occurrence of rockburst, destress blasting has been applied to numerous mining conditions to precondition highly stressed rock mass to mitigate the risk of rockburst occurrence in deep mines as well as in deep underground constructions. However, the application of destress blasting mostly depends on engineering experience, while its mechanism and efficiency have not been well understood. Rapid advances in computer technology have made numerical simulation an economical and effective method to study the rock blasting effect. Enormous research efforts have been made to numerically investigate the blasting fracture mechanism, optimize blasting design, …

Analysis Of The Application Of Methane-Bearing Capacity Test Methods In The Conditions Of Polish Mining, Marcin Karbownik

Journal of Sustainable Mining

The methane hazard is one of the natural hazards occurring in hard coal mining. The content of natural methane in hard coal seams, the so-called methane-bearing capacity, is one of the key parameters that allow for proper assessment of the methane hazard and the state of the threat of gas and rock outbursts. For safety purposes, there is a constant need to improve the methods for the determination of this parameter. In the conditions of Polish mining, the method used for methane-bearing capacity determination is the direct drill cuttings method. This paper contains a comparative study presenting three different methods …

Proposed Design Fire Scenarios For Underground Hard Rock Mines, Rickard Hansen

Journal of Sustainable Mining

Given the complexity and uniqueness of underground hard rock mines, the application of the design fire scenario approach is recommended when evaluating fire safety in mines. Providing a full set of design fire scenarios – ensuring that several important life safety aspects are covered – for a mine can be challenging. The question is whether a catalogue of potential clusters of design fire scenarios could be developed, covering important aspects found underground? Given the general lack of research into design fires in the mining industry, this paper provides a unique analysis of design fire scenarios in underground hard rock mines. …

One-Point Gleason Parts And Point Derivations In Uniform Algebras, Swarup Ghosh, Alexander J. Izzo

Faculty Articles & Research

It is shown that a uniform algebra can have a nonzero bounded point derivation while having no nontrivial Gleason parts. Conversely, a uniform algebra can have a nontrivial Gleason part while having no nonzero, even possibly unbounded, point derivations.

A Molecular Chemodosimeter To Probe “Closed Shell” Ions In Kidney Cells, Rashid Mia

Faculty Publications

Two quinidine-functionalized coumarin molecular probes have been synthesized and have been found to bind metal cations (Cd2+, Co2+, Cu2+, Fe2+, Hg2+, Ni2+, and Zn2+) with high affinity in organic–aqueous media (DMSO–HEPES). The chemodosimeters coordinate with the Zn2+ ions in a two-to-one ratio (molecular probe : Zn2+) with a log β of 10.0 M−2. Upon the addition of the closed-shell metal ions studied, a fluorescence turn-on via an excimer formation is seen at 542 nm due to the quinaldine moiety adopting a syn arrangement when coordinated to the metal Zn2+ ions. Confocal microscopy monitored free Zn2+ ions in the Human Embryonic …