Physical Sciences and Mathematics Commons^™

Error Analysis Of A Fully Discrete Projection Method For Magnetohydrodynamic System, Qianqian Ding, Xiaoming He, Xiaonian Long, Shipeng Mao

Mathematics and Statistics Faculty Research & Creative Works

In this paper, we develop and analyze a finite element projection method for magnetohydrodynamics equations in Lipschitz domain. A fully discrete scheme based on Euler semi-implicit method is proposed, in which continuous elements are used to approximate the Navier–Stokes equations and H(curl) conforming Nédélec edge elements are used to approximate the magnetic equation. One key point of the projection method is to be compatible with two different spaces for calculating velocity, which leads one to obtain the pressure by solving a Poisson equation. The results show that the proposed projection scheme meets a discrete energy stability. In addition, with the …

Pan-Arctic Soil Moisture Control On Tundra Carbon Sequestration And Plant Productivity, Donatella Zona, Peter M. Lafleur, Koen Hufkens, Beniamino Gioli, Barbara Bailey, George Burba, Eugénie S. Euskirchen, Jennifer D. Watts, Kyle A. Arndt, Mary Farina, John S. Kimball, Martin Heimann, Mathias Göckede, Martijn Pallandt, Torben R. Christensen, Mikhail Mastepanov, Efrén López-Blanco, Albertus J. Dolman, Roisin Commane, Charles E. Miller, Josh Hashemi, Lars Kutzbach, David Holl, Julia Boike, Christian Wille, Torsten Sachs, Aram Kalhori, Elyn R. Humphreys, Oliver Sonnentag, Gesa Meyer, Gabriel H. Gosselin, Philip Marsh, Walter C. Oechel

Daugherty Water for Food Global Institute: Faculty Publications

Long-term atmospheric CO₂ concentration records have suggested a reduction in the positive effect of warming on high-latitude carbon uptake since the 1990s. A variety of mechanisms have been proposed to explain the reduced net carbon sink of northern ecosystems with increased air temperature, including water stress on vegetation and increased respiration over recent decades. However, the lack of consistent long-term carbon flux and in situ soil moisture data has severely limited our ability to identify the mechanisms responsible for the recent reduced carbon sink strength. In this study, we used a record of nearly 100 site-years of eddy covariance …

Monarch Science Observer, Volume 16, College Of Sciences, Old Dominion University

College of Sciences Newsletter

Spring 2023, issue of Monarch Science Observer, ODU Colleges of Sciences Newsletter.

Socioeconomic Factors In The Diagnosis And Treatment Of Malignant Melanoma In Hispanic Vs. Non-Hispanic Patients: A National Cancer Database (Ncdb) Study, Julia Griffin, Sarah J. Aurit, Timothy Malouff, Peter Silberstein

Department of Statistics: Faculty Publications

Background: The incidence of melanoma is rapidly increasing in the United States. There is a paucity of research of how melanoma affects the Hispanic population, the quickest growing population.

Objective: To identify and understand how socioeconomic factors affect a Hispanic patients health outcome and treatment of malignant melanoma with comparisons to white, non-Hispanic (WNH) patients.

Methods: A retrospective study utilizing the National Cancer Database (NCDB) was completed investigating Hispanic patients (n=2282) and WNH patients (n=190,469) with Stage I-IV malignant melanoma. Outcome and socioeconomic variables were identified and compared across groups. Data was analyzed with SPSS and SAS …

Estimating The Prevalence Of Two Or More Diseases Using Outcomes From Multiplex Group Testing, Md S. Warasi, Joshua M. Tebbs, Christopher S. Mcmahan, Christopher R. Bilder

Department of Statistics: Faculty Publications

When screening a population for infectious diseases, pooling individual specimens (e.g., blood, swabs, urine, etc.) can provide enormous cost savings when compared to testing specimens individually. In the biostatistics literature, testing pools of specimens is commonly known as group testing or pooled testing. Although estimating a population-level prevalence with group testing data has received a large amount of attention, most of this work has focused on applications involving a single disease, such as human immunodeficiency virus. Modern methods of screening now involve testing pools and individuals for multiple diseases simultaneously through the use of multiplex assays. Hou et al. (2017, …

Penguins Go Parallel: A Grammar Of Graphics Framework For Generalized Parallel Coordinate Plots, Susan Vanderplas, Yawei Ge, Antony Unwin, Heike Hofmann

Department of Statistics: Faculty Publications

Parallel Coordinate Plots (PCP) are a valuable tool for exploratory data analysis of high-dimensional numerical data. The use of PCPs is limited when working with categorical variables or a mix of categorical and continuous variables. In this article, we propose Generalized Parallel Coordinate Plots (GPCP) to extend the ability of PCPs from just numeric variables to dealing seamlessly with a mix of categorical and numeric variables in a single plot. In this process we find that existing solutions for categorical values only, such as hammock plots or parsets become edge cases in the new framework. By focusing on individual observations …

The Role Of Year And Animal Origin On Key Determinants Of Ewe Longevity, Audrey Burton, Annika Weaver, Rebekah Mills, Flint Herrelson, Patricia Harrelson

2023 Celebration of Student Scholarship - Poster Presentations

The MSU sheep flock is an Innovation Flock in the Sheep GEMS project through the University of Nebraska-Lincoln. The Sheep GEMS project is a national, multi-breed project that is focused on evaluating different sheep breeds and their longevity in different climates. As a participant, we collect/send raw data that is compiled. Our preliminary data from the 2022 (Year 1) and 2023 (Year 2) lambing season has been included. We collected measurements from Katahdin ewes (n = 38; 1-4.5 years old). We measured fecal egg counts (FEC), FAMACHA scores, body condition scores (BCS), teat and udder scores. Using the MIXED procedures …

Analysis And Installation Of A Demonstration Agroforestry Orchard For Californian Mediterranean Plant Communities, Brandon Hurd

Master of Science in Environmental Sciences and Management Projects

Climate-appropriate agroforestry can provide low-input food security and ecosystem services for local Californian Mediterranean climates, while conserving natural resources (e.g., water, nitrogen, etc.). This project showcases a variety of agroforestry methods for five common plant communities of California and other analogous Mediterranean climates at the CAFES Experimental Farm on the campus of Cal Poly San Luis Obispo. Plant community species and their ethnobotanical uses were analyzed to mimic and incorporate aspects of native flora. Agricultural plants were also characterized to represent each of the five selected plant communities. GIS was used to assess the project site for soil, slope, and …

The World Is Cognizable: An Argument Based On Hoermander's Theorem, Miroslav Svitek, Olga Kosheleva, Vladik Kreinovich

Departmental Technical Reports (CS)

Is the world cognizable? Is it, in principle, possible to predict the future state of the world based on the measurements and observations performed in a local area -- e.g., in the Solar system? In this paper, we use general physicists' principles and a mathematical theorem about partial differential equations to show that such prediction is indeed, theoretically possible.

Use Of Machine Learning In Interactive Cybersecurity And Network Education, Neil Loftus, Husnu S. Narman

Computer Sciences and Electrical Engineering Faculty Research

Cybersecurity is a complex subject for students to pursue. Hands-on online learning through labs and simulations can help students become more familiar with the subject at security classes to pursue cybersecurity education. There are several online tools and simulation platforms for cybersecurity education. However, those platforms need more constructive feedback mechanisms, and customizable hands-on exercises for users, or they oversimplify or misrepresent the content. In this paper, we aim to develop a platform for cybersecurity education that can be used either with a user interface or command line and provide auto constructive feedback for command line practices. Moreover, the platform …

Citation: Almarwani, B.; Hamada, Y.Z.; Phambu, N.; Sunda-Meya, A. Investigating The Insertion Mechanism Of Cell-Penetrating Peptide Penetratin Into Cell Membranes: Implications For Targeted Drug Delivery. Biophysica 2023, 3, 620–635. Https://Doi.Org/ 10.3390/Biophysica3040042 Academic Editor: Herbert Schneckenburger Received: 14 October 2023 Revised: 4 November 2023 Accepted: 7 November 2023 Published: 11 November 2023 Copyright: © 2023 By The Authors. Licensee Mdpi, Basel, Switzerland. This Article Is An Open Access Article Distributed Under The Terms And Conditions Of The Creative Commons Attribution (Cc By) License (Https:// Creativecommons.Org/Licenses/By/ 4.0/).Biophysica Article Investigating The Insertion Mechanism Of Cell-Penetrating Peptide Penetratin Into Cell Membranes: Implications For Targeted Drug Delivery, Bashiyar Almarwani, Yahia Z. Hamada, Nsoki Phambu, Anderson Sunda-Meya

Chemistry Faculty Research

The cell-penetrating peptide (CPP) penetratin (PEN) has garnered attention for its potential to enter tumor cells. However, its translocation mechanism and lack of selectivity remain debated. This study investigated PEN’s insertion into healthy cells (H-) and cancer cells (C-) using micromolar concentrations and various techniques. Raman spectroscopy was used to determine PEN’s location in the lipid bilayer at different lipid-to-peptide ratios. Dynamic light scattering (DLS) and zeta potential analysis were used to measure the lipid–PEN complex’s size and charge. The results showed helical PEN particles directly inserted into C- membranes at a ratio of 110, while aggregated particles stayed on …

A Satellite-Based Monitoring System For Quantifying Surface Water And Mesic Vegetation Dynamics In A Semi-Arid Region, N. E. Kolarik, A. Roopsind, A. Pickens, J. S. Brandt

Human-Environment Systems Research Center Faculty Publications and Presentations

Semi-arid and arid systems cover one third of the earth’s land surface, and are becoming increasingly drier, but existing datasets do not capture all of the types of water resources that sustain these systems. In semi-arid environments, small surface water bodies and areas of mesic vegetation (wetlands, wet meadows, riparian zones) function as critical water resources. However, the most commonly-used maps of water resources are derived from the Landsat time series or single date aerial photographs, and are too coarse either spatially or temporally to effectively monitor water resource dynamics. In this study, we produced a Sentinel Fusion (SF) water …

Measuring Ground Surface Elevation Changes In A Slow-Moving Colluvial Landslide Using Combinations Of Regional Airborne Lidar, Uav Lidar And Uav Photogrammetric Surveys, Sarah E. Johnson, William C. Haneberg, L. Sebastian Bryson, Matthew M. Crawford

UK CARES Faculty Publications

Slow-moving, chronically destructive landslides are projected to grow in number globally in response to precipitation increases from climate change, and land disturbances from wildfire, mining and construction. In the Cincinnati and northern Kentucky metropolitan area, USA, landslides develop in colluvium that covers the steep slopes along the Ohio River and its tributaries. Here we quantify elevation changes in a slow-moving colluvial landslide over 14 years using county- wide lidar, uncrewed aerial vehicle (UAV) structure-from-motion (SfM) surveys and a UAV lidar survey. Because the technology and quality differ between surveys, the challenge was to calculate a threshold of detectable change for …

A Unified Approach To Regression Testing For Mobile Apps, Zeinab Saad Abdalla

Electronic Theses and Dissertations

Mobile Applications have been widely used in recent years daily all over the world and are essential in our personal lives and at work. Because Mobile Applications update frequently, it is important that developers perform regression testing to ensure their quality. In addition, the Mobile Applications market has been growing rapidly, allowing anyone to write and publish an application without appropriate validation. A need for regression testing has arisen with the growth of different Mobile Apps and the added functionalities and complexities. In this dissertation, we adapted the FSMWeb [14] approach for selective regression testing to allow for selective regression …

Flood Hydrology In Tropical Coastal Catchments: Linking Watershed Dynamics To Mangrove Sedimentation, Shannon L. Jones

Electronic Theses and Dissertations

Coastal flooding is expected to be more frequent and severe from amplified flooding from sea level rise (SLR) and upstream anthropogenic activity, particularly in tropical regions. Improved hydrologic modeling and characterization are needed to better understand, predict, and manage flooding where these amplifications are expected. Yet tropical catchments are often ungauged or have limited hydrogeomorphic data. Thus, locally calibrated models that incorporate local knowledge and alternative data can be used to provide greater information. This doctoral dissertation quantifies relationships between land use, precipitation, discharge, and downstream sediment accretion in a representative ungauged catchment using a locally calibrated rainfallrunoff model validated …

Linking Mathematical Models And Trap Data To Infer The Proliferation, Abundance, And Control Of Aedes Aegypti, Jing Chen, Xi Huo, Andre B. B. Wilke, John C. Beier, Chalmers Vasquez, William Petrie, Robert Stephen Cantrell, Chris Cosner, Shigui Ruan

Mathematics Faculty Articles

Aedes aegypti is one of the most dominant mosquito species in the urban areas of Miami-Dade County, Florida, and is responsible for the local arbovirus transmissions. Since August 2016, mosquito traps have been placed throughout the county to improve surveillance and guide mosquito control and arbovirus outbreak response. In this paper, we develop a deterministic mosquito population model, estimate model parameters by using local entomological and temperature data, and use the model to calibrate the mosquito trap data from 2017 to 2019. We further use the model to compare the Ae. aegypti population and evaluate the impact of rainfall intensity …

Vibrational Dynamics In The Undercooled Liquid Of Ultra-Fragile Metallic Glasses, Hillary L. Smith, C. N. Saunders, C. Bernal-Choban, S. H. Lohaus, C. J. Stoddard, L. K. Decker, J. Y. Y. Lin, J. L. Niedziela, D. L. Abernathy, J.-H. Na, M. D. Demetriou, B. Fultz

Physics & Astronomy Faculty Works

The lattice vibrational dynamics in ultra-fragile Pt₅₇Cu₂₃P₂₀ and Pt60Cu20P20 glasses were investigated using in situ inelastic neutron scattering to measure the evolution of the phonon density of states (DOS) through the glass transition, into the undercooled liquid phase, and through crystallization. The phonon DOS curves are remarkably similar for the undercooled liquids and the amorphous solids. The vibrational entropy was obtained with these phonon DOS curves, and changes in vibrational entropy caused by the glass transition are less than 0.05k_B/atom. For these highly fragile metal/metalloid glasses, the excess vibrational entropy of the …

Characterization Of A Set Of Small Planets With Tess And Cheops And An Analysis Of Photometric Performance, D. Oddo, D. Dragomir, A. Brandeker, H. P. Osborn, K. Collins, K. G. Stassun, N. Astudillo-Defru, A. Bieryla, S. B. Howell, D. R. Ciardi, S. Quinn, J. M. Almenara, C. Briceño, K. I. Collins, K. D. Colón, D. M. Conti, N. Crouzet, E. Furlan, T. Gan, C. L. Gnilka, R. F. Goeke, E. Gonzales, M. Harris, J. M. Jenkins, Eric L.N. Jensen, D. Latham, N. Law, M. B. Lund, A. W. Mann, B. Massey, F. Murgas, G. Ricker, H. M. Relles, P. Rowden, R. P. Schwarz, J. Schlieder, A. Shporer, S. Seager, G. Srdoc, G. Torres, J. D. Twicken, R. Vanderspek, J. N. Winn, C. Ziegler

Physics & Astronomy Faculty Works

The radius valley carries implications for how the atmospheres of small planets form and evolve, but this feature is visible only with highly precise characterizations of many small planets. We present the characterization of nine planets and one planet candidate with both NASA TESS and ESA CHEOPS observations, which adds to the overall population of planets bordering the radius valley. While five of our planets—TOI 118 b, TOI 262 b, TOI 455 b, TOI 560 b, and TOI 562 b—have already been published, we vet and validate transit signals as planetary using follow-up observations for four new TESS planets, including …

Designing Polymers With Stimuli-Responsive Degradation For Biomedical Applications, Chuanfeng Li, Zhengyu Deng, Elizabeth R. Gillies

Chemistry Publications

Early biomedical applications of polymers were in areas such as joint replacements and often involved durable polymers. However, biodegradable polymers are increasingly being used to perform temporary functions such as drug delivery or supporting cells, after which they can break down and be eliminated from the body. Polymers that degrade specifically in response to stimuli offer additional opportunities to control when and where this degradation occurs, enabling enhanced functions such as site-specific drug release and the early detection of disease. In this article, we will discuss recent advancements in the design, preparation, and application of stimuli-responsive polymer degradation. In …

Patient And Physician Factors Associated With First Diagnosis Of Non-Affective Psychotic Disorder In Primary Care, Joshua C. Wiener, Rebecca Rodrigues, Jennifer N S Reid, Suzanne Archie, Richard G Booth, Chiachen Cheng, Saadia Hameed Jan, Paul Kurdyak, Arlene G Macdougall, Lena Palaniyappan, Bridget L Ryan, Kelly K. Anderson

Epidemiology and Biostatistics Publications

Primary care physicians play a central role in pathways to care for first-episode psychosis, and their increased involvement in early detection could improve service-related outcomes. The aim of this study was to estimate the proportion of psychosis first diagnosed in primary care, and identify associated patient and physician factors. We used linked health administrative data to construct a retrospective cohort of people aged 14-35 years with a first diagnosis of non-affective psychosis in Ontario, Canada between 2005-2015. We restricted the sample to patients with help-seeking contacts for mental health reasons in primary care in the six months prior to first …

Evaluating The Feasibility And Potential Impacts Of A Recovery-Oriented Psychosocial Rehabilitation Toolkit In A Health Care Setting In Kenya: A Mixed-Methods Study, Regina Casey, Joshua C. Wiener, Terry Krupa, Rosemary Lysaght, Marlene Janzen Le Ber, Ruth Ruhara, Elizabeth Price, Romaisa Pervez, Sean Kidd, Victoria Mutiso, David M Ndetei, Arlene G Macdougall

Epidemiology and Biostatistics Publications

OBJECTIVES: This pilot study evaluated the feasibility and potential impacts of delivering the Psychosocial Rehabilitation (PSR) Toolkit for people with serious mental illness within a health care setting in Kenya.

METHOD: This study used a convergent mixed-methods design. Participants were people with serious mental illness (n = 23), each with an accompanying family member, who were outpatients of a hospital or satellite clinic in semirural Kenya. The intervention consisted of 14 weekly group sessions of PSR cofacilitated by health care professionals and peers with mental illness. Quantitative data were collected from patients and family members using validated outcome measures before …

Simulation Of Monthly Mean And Monthly Base Flow Of Streamflow Using Random Forests For The Mississippi River Alluvial Plain, 1901 To 2018, Benjamin J. Dietsch, William H. Asquith, Brian K. Breaker, Stephen M. Westenbroek, Wade H. Kress

United States Geological Survey: Water Reports and Publications

Improved simulations of streamflow and base flow for selected sites within and adjacent to the Mississippi River Alluvial Plain area are important for modeling groundwater flow because surface-water flows have a substantial effect on groundwater levels. One method for simulating streamflow and base flow, random forest (RF) models, was developed from the data at gaged sites and, in turn, was used to make monthly mean streamflow and base-flow predictions at 162 ungaged sites in the study area. Daily streamflow observations and computed base flow from 247 streamgages were used as the basis for the development of these RF models. RF …

Addressing Plastic Pollution Through Green Consumption: Predicting Intentions To Use Menstrual Cups In The Philippines, Alvin Patrick M. Valentin, Ma. Regina Hechanova-Alampay

Quantitative Methods and Information Technology Faculty Publications

Plastic pollution is a global environmental crisis that poses a huge threat to the health of people and marine ecosystems worldwide. A significant source of plastic pollution is menstrual hygiene management, and an approach that can help address this crisis is the usage of washable and reusable menstrual cups. Using an extended theory of planned behavior model that includes self-identity and perceived quality, the study predicted intentions to use menstrual cups in the Philippines. Structural equation modeling results showed that perceived quality predicted attitudes towards menstrual cup usage. Moreover, attitudes, perceived behavioral control, and self-identity predicted intentions to use menstrual …

Why Gliding Symmetry Used To Be Prevalent In Biology But Practically Disappeared, Julio C. Urenda, Vladik Kreinovich

Departmental Technical Reports (CS)

At present, many living creatures have symmetries; in particular, the left-right symmetry is ubiquitous. Interestingly, 600 million years ago, very fee living creatures had the left-right symmetry: most of them had a gliding symmetry, symmetry with respect to shift along a line followed by reflection in this line. This symmetry is really seen in living creatures today. In this paper, we provide a physical-based geometric explanation for this symmetry change: we explain both why gliding symmetry was ubiquitous, and why at present, it is rarely observed, while the left-right symmetry is prevalent.

College Of Natural Sciences Newsletter, February 2023, College Of Natural Sciences

College of Natural Sciences Newsletters and Reports

Volume 4, Issue 1

Page 1 Dean's Message
Page 2 Awards and Recognition
Page 3-4 Nobel Recipient Visits Campus
Page 4 Adopting the Pantry
Page 5 Growing a Recruitment Mindset
Page 6 February Outreach Events
Page 7 Media Coverage of CNS
Page 8 Open PRAIRIE Data
Page 9 54th Geography Convention, and Tom Loveland EROS Geography Scholarship
Page 10 Photos of Dr. Carolyn Bertozzi's Visit

Development Of A Biaxial Apparatus For Jamming Profiles Of Photoelastic Granular Media, H. Zheng, G. Dai, Cacey Stevens Bester, M. Wang, D. Wang

Physics & Astronomy Faculty Works

We describe a two-dimensional biaxial apparatus that is used to conduct the experimental study of the jamming of granular media. The setup is designed based on the photoelastic imaging technique, which allows us to detect force-bearing contacts among particles, calculate the pressure on each particle according to the mean squared intensity gradient method, and compute contact forces on each particle [T. S. Majmudar and R. P. Behringer, Nature 435, 1079–1082 (2005)]. Particles float in a density-matched solution to avoid basal friction during experiments. We can compress (uniaxially or biaxially) or shear the granular system by an entangled comb geometry by …

Critical Workforce Skills For Bachelor-Level Geoscientists: An Analysis Of Geoscience Job Advertisements, Gregory W. Shafer, K. Viskupic, Anne E. Egger

Geological Sciences Faculty Scholarship

Understanding the skills bachelor-level geoscientists need to enter the workforce is critical to their success. The goal of this study was to identify the workforce skills that are most requested from a broad range of geoscience employers. We collected 3668 job advertisements for bachelor-level geoscientists and used a case-insensitive, code-matching function in Matlab to determine the skills geoscience employers seek. Written communication (67%), field skills (63%), planning (53%), and driving (51%) were most frequently requested. Field skills and data collection were frequently found together in the ads. Written communication skills were common regardless of occupation. Quantitative skills were requested less …

Constructing A Shariah Document Screening Prototype Based On Serverless Architecture, Marhanum Che Mohd Salleh, Rizal Mohd Nor, Faizal Yusof, Md Amiruzzaman

Computer Science Faculty Publications

The aim of this research is to discuss the groundwork of building an Islamic Banking Document Screening Prototype based on a serverless architecture framework. This research first forms an algorithm for document matching based Vector Space Model (VCM) and adopts Levenshtein Distance for similarity setting. Product proposals will become a query, and policy documents by the central bank will be a corpus or database for document matching. Both the query and corpus went through preprocessing stage prior to similarity analysis. One set of queries with two sets of corpora is tested in this research to compare similarity values. Finally, a …

Twitch Trivia Battle Royale: Interactive Entertainment Engineering Game, Noah Tyler Ravetch

Computer Science and Software Engineering

As the world of digital media evolves, so too does the way producers and consumers of entertainment content interact with each other. Live streaming is one such evolution. In this format, one person broadcasts their camera and/or their computer screen to a large audience of viewers in real time. People tuning in can communicate with other viewers and the streamer using the chat feature built-in to the streaming platform.

A new type of entertainment has recently entered the marketplace: interactive entertainment. Concerts are being held virtually in games like Fortnite (Epic Games 2021). TV Shows on Netflix are beginning to …

Solving Fjssp With A Genetic Algorithm, Michael John Srouji

Computer Science and Software Engineering

The Flexible Job Shop Scheduling Problem is an NP-Hard combinatorial problem. This paper aims to find a solution to this problem using genetic algorithms, and discuss the effectiveness of this. Initially, I did exploratory work on whether neural networks would be effective or not, and found a lot of trade offs between using neural networks and chromosome sequencing. In the end, I decided to use chromosome sequencing over neural networks, due to the scope of my problem being on a small scale rather than on a large scale.

Therefore, the genetic algorithm was implemented using chromosome sequencing. My chromosomes were …