Physical Sciences and Mathematics Commons^™

Anomaly Detection In The Molecular Structure Of Gallium Arsenide Using Convolutional Neural Networks, Timothy Roche, Aihua W. Wood, Philip Cho, Chancellor Johnstone

Faculty Publications

This paper concerns the development of a machine learning tool to detect anomalies in the molecular structure of Gallium Arsenide. We employ a combination of a CNN and a PCA reconstruction to create the model, using real images taken with an electron microscope in training and testing. The methodology developed allows for the creation of a defect detection model, without any labeled images of defects being required for training. The model performed well on all tests under the established assumptions, allowing for reliable anomaly detection. To the best of our knowledge, such methods are not currently available in the open …

More Is Better Than One: The Effect Of Ensembling On Deep Learning Performance In Biochemical Prediction Problems, Jacob A. Stern

Theses and Dissertations

This thesis presents two papers addressing important biochemical prediction challenges. The first paper focuses on accurate protein distance predictions and introduces updates to the ProSPr network. We evaluate its performance in the Critical Assessment of techniques for Protein Structure Prediction (CASP14) competition, investigating its accuracy dependence on sequence length and multiple sequence alignment depth. The ProSPr network, an ensemble of three convolutional neural networks (CNNs), demonstrates superior performance compared to individual networks. The second paper addresses the issue of accurate ligand ranking in virtual screening for drug discovery. We propose MILCDock, a machine learning consensus docking tool that leverages predictions …

Libra: Harvesting Idle Resources Safely And Timely In Serverless Clusters, Hanfei Yu, Christian Fontenot, Hao Wang, Jian Li, Xu Yuan, Seung Jong Park

Computer Science Faculty Research & Creative Works

Serverless computing has been favored by users and infrastructure providers from various industries, including online services and scientific computing. Users enjoy its auto-scaling and ease-of-management, and providers own more control to optimize their service. However, existing serverless platforms still require users to pre-define resource allocations for their functions, leading to frequent misconfiguration by inexperienced users in practice. Besides, functions' varying input data further escalate the gap between their dynamic resource demands and static allocations, leaving functions either over-provisioned or under-provisioned. This paper presents Libra, a safe and timely resource harvesting framework for multi-node serverless clusters. Libra makes precise harvesting decisions …

An Investigation Into The Application Of The Meijering Filter For Document Recapture Detection, John Magee, Stephen Sheridan Phd, Christina Thorpe Phd

Conference papers

The proliferation of mobile devices allows financial institutions to offer remote customer services, such as remote account opening. Manipulation of identity documents using image processing software is a low-cost, high-risk threat to modern financial systems, opening these institutions to fraud through crimes related to identity theft. In this paper we describe our exploratory research into the application of biomedical image algorithms to the domain of document recapture detection. We perform a statistical analysis to compare different types of recaptured documents and train a support vector machine classifier on the raw histogram data generated using the Meijering filter. The results show …

Drivers And Dynamics Of Phytoplankton Communities And Harmful Algal Blooms In Mountain Lakes, Lara Stephanie Jansen

Dissertations and Theses

Harmful cyanobacterial blooms (cyanoHABs) are a complex and widespread disturbance in freshwater water bodies, impacting water quality for wildlife and human populations. While cyanobacteria often bloom in warm lakes impacted by human development like agriculture, blooms are increasingly reported in cooler waters with limited development in the surrounding watershed. As much of cyanoHAB research has focused on lakes in highly developed watersheds, the understanding of factors leading to cyanobacteria dominance and blooms in the absence of major development remains limited. Mountain lakes can serve as ideal systems to study bloom-forming cyanobacteria in watersheds with minimal development. In addition, mountain lakes …

Green Infrastructure Intervention To Improve Waste And Water System In Urban Areas, Muthiah Hakim Hadini, Farah Bulqis Muzakar, Nurlina Yustiningrum, Nicole Hall, Peicong Li, Freya Ward, Ova Candra Dewi, Coriesta Dian Sulistiani, Andrew Flynn

Smart City

The increase in waste generation and water use in urban areas may lead to local flooding that is dangerous for health if it is not appropriately managed by waste and water systems in urban infrastructure. Sponge City is a concept that utilizes Green Infrastructures (GIs) to manage waste and water systems while still maintaining open and public spaces function. This study aims to review the waste and water infrastructure systems in Depok, Indonesia which are compared with Gainesville in the United States, America and Cardiff, United Kingdom, to give recommendations for preventing flooding in urban areas. Analysis is done by …

Representing Quantum Spins In Different Coordinate Systems For Modelling Rigid Body Orientation, Nadjet Zioui, Aicha Mahmoudi, Mohamed Tadjine

Karbala International Journal of Modern Science

Various methods for representing the spatial orientation and rotation of objects are presented and compared with the quantum bit state representation. By contrasting spherical, Euler angle, quaternion, and quantum spin coordinate systems, this work highlights important concepts regarding the rotation axis of the X gate. Several ambiguities and incomplete definitions associated with the qubit state representation are discussed, such as the spin around the qubit itself and the explanation of the considered rotation angles and signs. A mathematical analysis of the physical meaning of each eigenstate is provided along with a new comprehensive and meaningful YPR-based 3D representation of a …

Quercetin As An Anticancer Candidate For Glioblastoma Multiforme By Targeting Akt1, Mmp9, Abcb1, And Vegfa: An In Silico Study, Muhammad Hermawan Widyananda, Setyaki Kevin Pratama, Arif Nur Muhammad Ansori, Yulanda Antonius, Viol Dhea Kharisma, Ahmad Affan Ali Murtadlo, Vikash Jakhmola, Maksim Rebezov, Mars Khayrullin, Marina Derkho, Emdad Ullah, Raden Joko Kuncoroningrat Susilo, Suhailah Hayaza, Alexander Patera Nugraha, Annise Proboningrat, Amaq Fadholly, Mada Triandala Sibero, Rahadian Zainul

Karbala International Journal of Modern Science

Quercetin, a natural compound present in various fruits and vegetables, shows promise as a potential inhibitor for glioblastoma multiforme (GBM) development. This study aims to examine the anti-GBM potential of Quercetin. The protein target of Quercetin is identified and analyzed using databases such as NCBI, SEA, CTD, and STRING. Protein-protein interaction (PPI) and functional annotation are carried out based on the obtained target proteins. Molecular docking and dynamics simulations are employed using AutoDock Vina and WebGro tools to analyze the interaction between Quercetin and its target proteins. The prediction of protein targets reveals that Quercetin directly targets four proteins associated …

Improving The Burt’S Sensitivity Using Noise Calibration Unit Via Crab Nebula Observations, Uday E. Jallod, Lana T. Ali, Hareth S. Mahdi, Kamal M. Abood

Karbala International Journal of Modern Science

Radio observations from astronomical sources like supernovae became one the most important sources of information about the physical properties of those objects. However, such radio observations are affected by various types of noise such as those from sky, background, receiver, and the system itself. Therefore, it is essential to eliminate or reduce these undesired noise from the signals in order to ensure accurate measurements and analysis of radio observations. One of the most commonly used methods for reducing the noise is to use a noise calibrator. In this study, the 3-m Baghdad University Radio Telescope (BURT) has been used to …

New Statistical Methodology For Capacitor Data Analysis Via Lcr Meter, Usama Afzal, Muhammad Aslam

Neutrosophic Systems with Applications

This research work introduces a novel methodology to establish the relationship between capacitance and resistance when dealing with imprecise data obtained from LCR meters. The proposed relationship is based on the principles of neutrosophic statistics, enabling the utilization of interval data of resistance or capacitance without losing the indeterminacy of the intervals. By employing this relationship, we can accurately determine capacitance values from interval data of resistance, thereby generating more flexible and informative graphs. Additionally, we have applied the neutrosophic analysis method to the interval data of resistance to further enhance our findings. The comparative analysis demonstrates the superiority of …

New Types Of Soft Sets” Hypersoft Set, Indetermsoft Set, Indetermhypersoft Set, And Treesoft Set”: An Improved Version, Florentin Smarandache

Neutrosophic Systems with Applications

This is an improved paper of [10], where we recall the definitions together with practical applications of the Soft Set and its extensions to HyperSoft Set, IndetermSoft Set, IndetermHyperSoft Set, and TreeSoft Set.

New Statistical Methodology For Capacitor Data Analysis Via Lcr Meter, Usama Afzal, Muhammad Aslam

Neutrosophic Systems with Applications

This research work introduces a novel methodology to establish the relationship between capacitance and resistance when dealing with imprecise data obtained from LCR meters. The proposed relationship is based on the principles of neutrosophic statistics, enabling the utilization of interval data of resistance or capacitance without losing the indeterminacy of the intervals. By employing this relationship, we can accurately determine capacitance values from interval data of resistance, thereby generating more flexible and informative graphs. Additionally, we have applied the neutrosophic analysis method to the interval data of resistance to further enhance our findings. The comparative analysis demonstrates the superiority of …

New Types Of Soft Sets” Hypersoft Set, Indetermsoft Set, Indetermhypersoft Set, And Treesoft Set”: An Improved Version, Florentin Smarandache

Neutrosophic Systems with Applications

This is an improved paper of [10], where we recall the definitions together with practical applications of the Soft Set and its extensions to HyperSoft Set, IndetermSoft Set, IndetermHyperSoft Set, and TreeSoft Set.

Comparative Life Cycle Assessment Of Small Vertical-Axis Wind Turbines And Natural Gas Facility At An Urban University, Mary Kate Ranii

Electronic Theses and Dissertations

Fossil fuels generate the majority of the electricity in the United States and generate pollutants that negatively affect public and environmental health. Renewable energy projects serve as an opportunity for low-pollution and low-carbon electricity; small-scale projects, such as vertical axis wind turbines (VAWTs), provide opportunities for generation in urban areas close to consumers. Researchers collected wind speed and directional data from a potential turbine installation site at Duquesne University to better demonstrate the potential benefits in an urban university location. The data was used in a life cycle assessment framework and a social review to better understand the value of …

Simultaneous Values Of The Totient Function, Nelson Carella

Publications and Research

A pair of integers $n$ and $n+k$ is a simultaneous solution of an arithmetic function $f:\mathbb{N}\longrightarrow \mathbb{R}$ if $f(n)=f(n+k)$, where $k\ne0$ is a fixed integer. This article shows that the totient function has infinitely many simultaneous solutions. In particular, $\varphi(n)=\varphi(n+2)$ infinitely often as $n\to\infty$.

Effectiveness Of 2016 Watershed Protection Plan On Bacteria And Nutrient Concentration Loads In The Attoyac Bayou Watershed, Jack Henson

Electronic Theses and Dissertations

In 2004, bacteria and nutrient sampling on the Attoyac Bayou Watershed discovered elevated concentrations of E. coli on five of the main channels key tributary streams. The Attoyac Bayou was then listed on the Texas 303d list of impaired waterbodies and further research was conducted to identify the main sources of contamination in the waterbody. In 2016, the Attoyac Bayou Watershed Plan (WPP) was developed to implement best management practices (BMPs) that would decrease bacteria and nutrient concentrations in the watershed. Educational outreach programs, on-site-sewage facility repair, and livestock management were some of the strategies suggested by the protection plan …

Bioinformatic Analysis Of The Interaction Of Evc And Evc2 Proteins, Md Atikul Islam Mamun

Electronic Theses and Dissertations

Protein to protein interactions are significant to various biological processes, functioning, and the regulation of cells and organisms. Proteins perform essential cellular tasks and often work together in complexes, enabling specific functions like enzymatic activity, signal transduction, DNA replication, and cell division. These interactions are important in signaling pathways, allowing proteins to interact sequentially, leading to specific cellular responses. Some proteins rely on chaperones to fold correctly, and protein to protein interactions enhance stability, preventing degradation.

Researchers at Stanford University School of Medicine discovered that EvC syndrome is related to a malfunction in the Hedgehog (Hh) signaling pathway. They found …

Modifying The Composition Of A High Temperature Superconductor, Drue Lubanski

Electronic Theses and Dissertations

The purpose of this research was to recreate a known superconductor, YBa₂Cu₃O_x, and modify it in an attempt to raise its transition temperature. A superconductor is any material that excludes magnetic flux from its interior when at a temperature below its transition temperature. A “high temperature” superconductor refers to material that shows superconductivity at or above the temperature of liquid nitrogen temperatures (77.15K).

Here we were successful in reproducing the original YBa₂Cu₃O_x and measuring its critical temperature; However, our efforts at raising the transition temperature have, as of yet, …

Examining The Effectiveness Of Using Point-Of-View Video Modeling On Mathematics Improvement In Students With Learning Disabilities In Saudi Arabia, Tirad Alsaluli

Electronic Theses and Dissertations

Video Modeling (VM) is one of the most widely used approaches by researchers to improve many skills, such as academic skills in students with Learning Disabilities (LD; Boon et al., 2020). As the incidence rate of individuals with LD in Saudi Arabia increase (Almedlij & Rubinstein-Ávila, 2018), the need for evidence-based math interventions focused on the math development of individuals with LD also increases. Although VM is recognized as an Evidence-based Practice (EBPs), a limited number of studies have implemented VM as an intervention to improve mathematic skills. Implementing VM as a math intervention strategy would explore its effects on …

Proposing A Measure Of Ethicality For Humans And Ai, Alejandro Jorge Napolitano Jawerbaum

Electronic Theses and Dissertations

Smarter people or intelligent machines are able to make more accurate inferences about their environment and other agents more efficiently than less intelligent agents. Formally: ‘Intelligence measures an agent’s ability to achieve goals in a wide range of environments.’ (Legg, 2008)

In this dissertation we extend this definition to include ethical behaviour and we will offer a mathematical formalism and a way to estimate how ethical an action is or will be, both for a human and for a computer, by calculating the expected values of random variables. Formally, we propose the following measure of ethicality, which is computable, or …

Indirect Aggression And Victimization: Investigating Instrument Psychometrics, Gender Differences, And Its Relationship To Social Information Processing, Taylor Steeves

Electronic Theses and Dissertations

The study of indirect bullying behaviors, relational aggression and social aggression, has been of theoretical importance and interest to researchers and psychologists within the last few decades. In this investigation, using a convenience sample of 451 late adolescents attending a private university in the mid-Atlantic U.S., I examined the factor structure of two measures of indirect bullying, the Young Adult Social Behavior Scale – Victim (YASB-V) and the Young Adult Social Behavior Scale – Perpetrator (YASB-P). Using confirmatory factor analysis (CFA), I found that the YASB-V comprised a four-factor model, differing from the model that had been identified in the …

[3+2]-Cycloadditions Of Tertiary Amine N-Oxides And Dipolarophiles Providing An Efficient Route To Heterocyclics And 1,2-Diamines, And Nickel Catalayzed Transformations, Sarah Hejnosz

Electronic Theses and Dissertations

Nitrogen containing compounds are ubiquitous in nature as well as pharmaceuticals. These structures exhibit rich bioactive and chemical properties boasting an array of practical applications. As a result, the synthetic methods of forming nitrogen containing compounds are highly sought after. More efficient syntheses of these structures could result in less expensive industrial processes, particularly in the pharmaceutical industry. Roussi and coworkers established a highly efficient synthetic route forming nitrogen containing heterocycles in a single step from commercially available reagents, however this chemistry has not be used since its discovery in the 1980. Herein, this work greatly expanded Roussi’s method and …

Assessment Of Facultative Sulfur Reducing Bacteria In Acidic And Circumneutral Passive Remediation Systems Using A Novel Culturing Technique, Natalie Lamagna

Electronic Theses and Dissertations

Pollution resulting from abandoned mine drainage (AMD) is widespread across the nation and impacts thousands of miles of watersheds in Pennsylvania alone. AMD contaminants pose hazards to ecosystems and to human health by lowering the pH and by suspending toxic heavy metals in water. Sulfur reducing bacteria (SRB) are known to remove metals and sulfur species from mine drainage through the formation of metal sulfide precipitates and have been documented to raise the alkalinity of water. Therefore, it is necessary to understand the environmental conditions in which these microorganisms survive. Environmental samples were collected from a circumneutral and an acidic …

Investigating The Impact On Private Water Supply Of Hydraulic Fracturing Communication With An Abandoned Conventional Gas Well In New Freeport, Pa, Kiley Miller

Electronic Theses and Dissertations

In June of 2022 a “frac out” occurred in New Freeport, PA when an unconventional gas well under development by hydraulic fracturing, communicated with an abandoned gas well to the surface. An initial “zone of impact” encompassed much of the town’s main thoroughfare. Water samples were obtained from 17 private water wells, 5 springs and 1 pond (31 total samples) and analyzed for cations, anions, and light hydrocarbons. Methane was found in 18 of the samples, both located within and outside of the “zone of impact”. Mass ratio analyses indicated contamination from both unconventional and conventional wells. Interferometric Synthetic Aperture …

What's The Password? Account Sharing In The Context Of Passwordless Authentication, Daniel Taylor

Undergraduate Honors Theses

Passwordless authentication methods are becoming increasingly available for online accounts. This research asks how people will share online accounts with friends and family when there is no longer a password to share. Research participants were introduced to passwordless authentication methods and asked how they imagine the account sharing process might work. They were then introduced to four different methods of passwordless accounts, and asked to evaluate them. Sharing a link to register an additional authentication method proved to be the most popular method of account sharing.

Design Of Stormwater Bmps For Surface And Groundwater Protection Based On Site-Scale Soil Properties: Phase I, Kelly Kibler, Lisa Chambers, Melanie Beazley

Florida DOT

Much of Earth’s nutrient cycling takes place in soils. Characteristics of soils control physical, chemical, and biological processes that determine rates of nutrient fluxes, storage, or transformation. As remediation of excess nutrients in stormwater runoff is one function of stormwater Best Management Practices (BMPs), the soil profile constitutes one of the most important factors of BMP design. Variation observed in BMP effectiveness (e.g., why one BMP design works effectively in one place and not another) can often be explained by variations in the soil profile, either through direct means or by a soil’s influence on hydraulics of stormwater flow through …

Can Gulf Ribbed Mussels Enhance Coastal Restoration Projects In A Future With Climate Change?, Skylar Liner

LSU Master's Theses

Living shorelines present one restoration approach using biotic elements (via ecosystem engineers) to stabilize shorelines and increase valuable habitat. Gulf ribbed mussels (Geukensia granosissima) are important ecosystem engineers within brackish and salt marshes in the northern Gulf of Mexico, and can increase nutrient availability, enhance marsh vegetation production, and potentially improve shoreline stability. It is unknown whether mussels will maintain these functions as future climate change predicts increases in temperature and water level, which may exceed the mussel’s tolerance. A field survey conducted during the summer of 2022 identified the daily maximum temperature at the marsh surface, where mussels naturally …

Cloning A Fusion Gene For The Identification Of The Proteins Contained In Ubiquitin-Rich Condensates, Grace M. Whitehead

Undergraduate Honors Theses

Cellular liquid-liquid phase separation (LLPS) is a mechanism by which membraneless organelles such as polyubiquitinated condensates form and function. A non-receptor tyrosine kinase, Tnk1, binds to the polyubiquitin of polyubiquitinated condensates that are labeled for the proteasome for autophagy through its ubiquitin association (UBA) domain. This tyrosine kinase has links to a subset of hematological cancers, so identifying the protein contents within polyubiquitinated condensates is essential for understanding their significance in cancer pathways and to eventually identify potential therapeutic targets. This honors thesis focuses on the cloning of a fusion gene, pcDNA3.1 mNeonGreen–V5–UBA, as well as its deactivated L36D variant, …

Discovery Of Gamma Rays From The Quiescent Sun With Hawc, A. Albert, R. Alfaro, C. Alvarez, J. C. Arteaga-Velázquez, D. Avila Rojas, H. A. Ayala Solares, R. Babu, E. Belmont-Moreno, C. Brisbois, K. S. Caballero-Mora, T. Capistrán, A. Carramiñana, S. Casanova, O. Chaparro-Amaro, U. Cotti, J. Cotzomi, S. Coutiño De León, E. De La Fuente, R. Diaz Hernandez, B. L. Dingus, M. A. Duvernois, M. Durocher, J. C. Diaz-Velez, R. W. Ellsworth, K. Engel, C. Espinoza, K. L. Fan, K. Fang, M. Fernandez Alonso, H. Fleischhack, N. Fraija, J. A. Garcia-Gonzalez, F. Garfias, M. M. Gonzalez, J. A. Goodman, J. P. Harding, S. Hernandez, J. Hinton, D. Huang, F. Hueyotl-Zahuantitla, P. Huntemeyer, A. Iriarte, V. Joshi, S. Kaufmann, J. Lee, J. T. Linnemann, A. L. Longinotti, G. Luis-Raya, K. Malone, O. Martinez, J. Martinez-Castro, J. A. Matthews, P. Miranda-Romagnoli, J. A. Morales-Soto, E. Moreno, M. Mostafa, A. Nayerhoda, L. Nellen, M. U. Nisa, R. Noriega-Papaqui, L. Olivera-Nieto, N. Omodei, Y. Perez Araujo, E. G. Perez-Perez, C. D. Rho, D. Rosa-Gonzalez, E. Ruiz-Velasco, H. Salazar, D. Salazar-Galeggos, A. Sandoval, M. Schneider, J. Serna-Franco, A. J. Smith, Y. Son, R. W. Springer, O. Tibolla, K. Tollefson, I. Torres, R. Torres-Escobedo, R. Turner, F. Urena-Mena, E. Varela, J. Villasenor, Xiaojie Wang, I. J. Watson, E. Willox, S. Yun-Carcamo, H. Zhou, C. De Leon

Physics Faculty Research & Creative Works

We report the first detection of a TeV γ-ray flux from the solar disk (6.3σ), based on 6.1 years of data from the High-Altitude Water Cherenkov (HAWC) observatory. The 0.5-2.6 TeV spectrum is well fit by a power law, dN/dE=A(E/1 TeV)-γ, with A=(1.6±0.3)x10-12 TeV-1 cm-2 s-1 and γ=3.62±0.14. The flux shows a strong indication of anticorrelation with solar activity. These results extend the bright, hard GeV emission from the disk observed with Fermi-LAT, seemingly due to hadronic Galactic cosmic rays showering on nuclei in the solar atmosphere. However, current theoretical models are unable to explain the details of how solar …

2022 Final Unreclaimed Sites Quality Assurance Project Plan (Qapp) Revision 1, Pioneer Technical Services, Inc.

Silver Bow Creek/Butte Area Superfund Site

No abstract provided.