Physical Sciences and Mathematics Commons^™

A Bayesian Framework For The Classification Of Microbial Gene Activity States, Craig Disselkoen, Brian Greco, Kaitlyn Cook, Kristin Koch, Reginald Lerebours, Chase Viss, Joshua Cape, Elizabeth Held, Yonatan Ashenafi, Karen Fischer, Allyson Acosta, Mark Cunningham, Aaron A. Best, Matthew Dejongh, Nathan Tintle

Statistical and Data Sciences: Faculty Publications

Numerous methods for classifying gene activity states based on gene expression data have been proposed for use in downstream applications, such as incorporating transcriptomics data into metabolic models in order to improve resulting flux predictions. These methods often attempt to classify gene activity for each gene in each experimental condition as belonging to one of two states: active (the gene product is part of an active cellular mechanism) or inactive (the cellular mechanism is not active). These existing methods of classifying gene activity states suffer from multiple limitations, including enforcing unrealistic constraints on the overall proportions of active and inactive …

Rapid Surface Water Volume Estimations In Beaver Ponds, Daniel J. Karran, Cherie J. Westbrook, Joseph M. Wheaton, Carol A. Johnston, Angela Bedard-Haughn

Natural Resource Management Faculty Publications

Beaver ponds are surface water features that are transient through space and time. Such qualities complicate the inclusion of beaver ponds in local and regional water balances, and in hydrological models, as reliable estimates of surface water storage are difficult to acquire without time and labour intensive topographic surveys. A simpler approach to overcome this challenge is needed, given the abundance of the beaver ponds in North America, Eurasia and southern South America. We investigated whether simple morphometric characteristics derived from readily available aerial imagery or quickly measured field attributes of beaver ponds can be used to approximate surface water …

Fluorescent Conjugated Polymers With A Bodipy-Based Backbone And Uses Thereof, Haiying Liu

Michigan Tech Patents

The present invention provides various fluorescent conjugated polymers with a BODIPY-based backbone. The invention also provides methods of using the polymers of the invention, such as for imaging and detection of cells, tumors, bacteria and viruses.

Progressive Redshifts In The Late-Time Spectra Of Type Ia Supernovae, C. S. Black, R. A. Fesen, J. T. Parrent

Dartmouth Scholarship

We examine the evolution of late-time, optical nebular features of Type Ia supernovae (SNe Ia) using a sample consisting of 160 spectra of 27 normal SNe Ia taken from the literature as well as unpublished spectra of SN 2008Q and ASASSN-14lp. Particular attention was given to nebular features between 4000-6000 A in terms of temporal changes in width and central wavelength. Analysis of the prominent late-time 4700 A feature shows a progressive central wavelength shift from ~4600 A to longer wavelengths out to at least day +300 for our entire sample. We find no evidence for the feature's red-ward shift …

Exploring The Edge Of Space: Streamlining Physics And Earth Science Collaboration In A New Community College Course, David Kobilka, Yoshinao Hirai Ph.D.

2017 Academic High Altitude Conference

We designed a new lab science course on stratospheric ballooning (SB), titled Exploring the Edge of Space. The course, which starts in the upcoming semester, brings together two groups of students simultaneously: Mainstream liberal arts students and students in the college’s Honors program. The Honors students meet an additional hour weekly, review scientific literature extensively, and complete a capstone project. The course design is a collaboration between the physics and earth science departments at Central Lakes College, and is drawn on the five-year experience of the authors doing SB flights, many in collaboration with the Bemidji State University SB program. …

Preliminary Results From A Ground Based Magnetometer Rotation Table, Rachel Newman, April Gross, Jolene Johnson, Kaye Smith, Erick Agrimson, James Flaten

2017 Academic High Altitude Conference

Understanding high altitude balloon rotation is important for many types of scientific measurements, therefore, balloon and payload rotation is a continuing area of interest and research. In this work, we present results obtained from an Arduino logged magnetometer rotated on a ground based rotation table. This table allowed us to precisely rotate and locate the Arduino logged magnetometer. We compare the Arduino logged results with “known magnetic field orientation” using an AIM rocketry altimeter. This comparison allowed us to test the accuracy of our Arduino logged results and the sampling capabilities of our magnetometer system using different rotational speeds.

High Altitude Cosmic Ray Detection, Jordan D. Van Nest

2017 Academic High Altitude Conference

Cosmic rays are high energy atomic nuclei travelling near the speed of light that collide with atoms and molecules in Earth’s upper atmosphere (primarily with nitrogen and oxygen), breaking down into a shower of particles of various energies in the stratosphere. As they travel earthward, these particles continue to break down and lose energy which results in relatively little ionizing radiation reaching the surface. Due to the scattering of cosmic rays, the angle at which the rays enter the atmosphere can affect the number and energies of ionizing particles detected at various altitudes. When using a standard Geiger counter on …

Development Of A "Multi-Cut" Payload For Use In Stratospheric Ballooning Missions, James Flaten, Joey Habeck, Noah Biniek, Steven Smeaton, Austin Langford, Jordan Diers, Isaac Krieger

2017 Academic High Altitude Conference

The ability to cut strings (AKA lines) during stratospheric ballooning missions has a wide variety of uses including, but not limited to, (a) flight termination (i.e. cutting payloads away from the main balloon), (b) cutting away excess lift balloon(s) to slow ascent rate (and possibly achieve float), (c) cutting away ballast weights to slow descent rate or increase ascent rate, (d) cutting away burst balloon(s) on descent to avoid parachute entanglement, and (e) cutting away payloads which are intended to return to the ground independently, for experimental purposes. We report on the development of a “multi-cut” payload box that uses …

What's All The Fuss About Coding?, Tim Bell

2009 - 2019 ACER Research Conferences

The idea of teaching ‘coding’ to school students has become popular, and the term appears in the names of many initiatives, such as Hour of Code and Code Club. But what do we really mean by ‘coding’, and why would you want every child to learn it? Won’t it be outdated soon? This paper looks at these issues, and why topics such as computer science are being taught to all students. This includes an assessment of misunderstandings around the idea of compulsory programming for every student, and the challenges that accompany the introduction of such topics into schools.

Abstracts From The 2016 Ahac Conference, Erick Agrimson

2017 Academic High Altitude Conference

This is a listing of Abstracts from AHAC 2016

Verwiebe's "3-D" Ice Phase Diagram Reworked, Carl W. David

Chemistry Education Materials

The two dimensional phase diagrams of the various forms of ice are difficult to read and understand. A ``3D'' versions appearing ~80 years ago helps understanding of the phases and their inter-conversion into other phases.

Acer Research Conference Proceedings (2016), Australian Council For Educational Research (Acer)

2009 - 2019 ACER Research Conferences

The focus of ACER’s Research Conference 2016 will be on what we are learning from research about ways of improving levels of STEM learning. Australia faces significant challenges in promoting improved science, technology, engineering and mathematics (STEM) learning in our schools. Research Conference 2016 will showcase research into what it will take to address these challenges, which include: the decline in Australian students’ mathematical and scientific ‘literacy’; the decline in STEM study in senior school; a shortage of highly qualified STEM subject teachers, and curriculum challenges. You will hear from researchers who work with teachers to engage students in studying …

Hidden Costs And Deadweight Losses: Bundled Parking Andresidential Rents In The Metropolitan United States, C. J. Gabbe, Gregory Pierce

Environmental Studies and Sciences

There is a major housing affordability crisis in many American metropolitan areas, particularly for renters. Minimum parking requirements in municipal zoning codes drive up the price of housing, and thus represent an important potential for reform for local policymakers. The relationship between parking and housing prices, however, remains poorly understood. We use national American Housing Survey data and hedonic regression techniques to investigate this relationship. We find that the cost of garage parking to renter households is approximately $1,700 per year, or an additional 17% of a housing unit’s rent. In addition to the magnitude of this transport cost burden …

Monitoring The Charge Distribution During Proton And Sodium Ion Conduction Along Chains Of Water Molecules And Protein Residues, Steve Scheiner

Chemistry and Biochemistry Faculty Publications

Quantum calculations are used to determine the level of delocalization of the charge of a cation as it translates along a chain of water molecules or glycine residues. Charge dispersal is monitored via the molecular electrostatic potential and the dipole moment of the entire system. The positive charge is largely localized on the water molecule on which the proton is situated, but becomes more intense and extended as the proton moves along the chain. The positive charge is more delocalized in protonated polyglycine, where it extends over at least an entire residue. Displacement of the proton along the chain intensifies …

1925, Soil Survey Of The Salinas Area, California, E. J. Carpenter And Stanley W. Cosby

State and Federal Documents Relating to Monterey and San Luis Obispo Counties

The 1925 reports describes the area surveyed, the climate, agriculture, soils, irrigation and drainage of the Salinas Valley. The report was prepared by E. J. Carpenter, United States Department of Agriculture and Stanley W. Cosby, University of California. The report covers the greater part of the area previously addressed in the Lapham and Heileman 1901 soil survey report.

Clawpack: Building An Open Source Ecosystem For Solving Hyperbolic Pdes, Donna Calhoun

Mathematics Faculty Publications and Presentations

Clawpack is a software package designed to solve nonlinear hyperbolic partial differential equations using high-resolution finite volume methods based on Riemann solvers and limiters. The package includes a number of variants aimed at different applications and user communities. Clawpack has been actively developed as an open source project for over 20 years. The latest major release, Clawpack 5, introduces a number of new features and changes to the code base and a new development model based on GitHub and Git submodules. This article provides a summary of the most significant changes, the rationale behind some of these changes, and a …

Obscured Agns In Bulgeless Hosts Discovered By Wise : The Case Study Of Sdss J1224+5555, S. Satyapal, N. J. Secrest, B. Rothberg, J. A. O’Connor, S. L. Ellison, R. C. Hickox

Dartmouth Scholarship

There is mounting evidence that supermassive black holes form and grow in bulgeless galaxies. However, a robust determination of the fraction of AGNs in bulgeless galaxies, an important constraint to models of supermassive black hole seed formation and merger-free models of AGN fueling, is unknown, since optical studies have been shown to be incomplete for low mass AGNs. In a recent study using the Wide-field Infrared Survey Explorer, we discovered hundreds of bulgeless galaxies that display mid-infrared signatures of extremely hot dust suggestive of powerful accreting massive black holes, despite having no signatures of black hole activity at optical wavelengths. …

Modeling PCo2 Variability In The Gulf Of Mexico, Zuo Xue, Ruoying He, Katja Fennel, Wei-Jun Cai, Steven Lohrenz, Wei-Jen Huang, Hanqin Tian, Wei Ren, Zhengchen Zang

Plant and Soil Sciences Faculty Publications

A three-dimensional coupled physical–biogeochemical model was used to simulate and examine temporal and spatial variability of sea surface pCO₂ in the Gulf of Mexico (GoM). The model was driven by realistic atmospheric forcing, open boundary conditions from a data-assimilative global ocean circulation model, and observed freshwater and terrestrial nutrient and carbon input from major rivers. A 7-year model hindcast (2004–2010) was performed and validated against ship measurements. Model results revealed clear seasonality in surface pCO₂ and were used to estimate carbon budgets in the Gulf. Based on the average of model simulations, the GoM was a …

High Efficiency Near Diffraction-Limited Mid-Infrared Flat Lenses Based On Metasurface Reflectarrays, Shuyan Zhang, Myoung Hwan Kim, Francesco Aieta, Alan She, Tobias Mansuripur, Ilan Gabay, Mohammadreza Khorasaninejad, David Rousso, Xiaojun Wang, Mariano Troccoli

Physics & Astronomy Faculty Publications

We report the first demonstration of a mid-IR reflection-based flat lens with high efficiency and near diffraction-limited focusing. Focusing efficiency as high as 80%, in good agreement with simulations (83%), has been achieved at 45° incidence angle at λ = 4.6 μm. The off-axis geometry considerably simplifies the optical arrangement compared to the common geometry of normal incidence in reflection mode which requires beam splitters. Simulations show that the effects of incidence angle are small compared to parabolic mirrors with the same NA. The use of single-step photolithography allows large scale fabrication. Such a device is important in the development …

Modeling Zombie Outbreaks: A Problem-Based Approach To Improving Mathematics One Brain At A Time, Matthew Lewis, James A. Powell

Mathematics and Statistics Faculty Publications

A great deal of educational literature has focused on problem-based learning (PBL) in mathematics at the primary and secondary level, but arguably there is an even greater need for PBL in college math courses. We present a project centered around the Humans vs. Zombies moderated tag game played on the USU campus. We discuss the project in the context of an undergraduate differential equations course and discuss how the project is launched. We highlight examples of students mathematical models along with their verbal and written responses as well as discussing assessment and student learning. Results are discussed in the context …

Inhibiting Androgen Receptor Nuclear Entry In Castration-Resistant Prostate Cancer, Julie A. Pollock, Suzanne E. Wardell, Alexander A. Parent, David B. Stagg, Stephanie J. Ellison, Holly M. Alley, Christina A. Chao, Scott A. Lawrence, James P. Stice, Ivan Spasojevic, Jennifer G. Baker, Sung Hoon Kim, Donald P. Mcdonnell, John A. Katzenellenbogen, John D. Norris

Chemistry Faculty Publications

Clinical resistance to the second-generation antiandrogen enzalutamide in castration resistant prostate cancer (CRPC), despite persistent androgen receptor (AR) activity in tumors, highlights the unmet medical need for next generation antagonists. We have identified and characterized tetra-aryl cyclobutanes (CBs) as a new class of competitive AR antagonists that exhibit a unique mechanism of action. These CBs are structurally distinct from current antiandrogens (hydroxyflutamide, bicalutamide, and enzalutamide), and inhibit AR-mediated gene expression, cell proliferation, and tumor growth in several models of CRPC. Conformational profiling revealed that CBs stabilize an AR conformation resembling an unliganded receptor. Using a variety of techniques, it was …

Creation Of A Conceptual Model For Adoption Of Mobile Apps For Shopping From E-Commerce Sites–An Indian Context, Vandana Ahuja, Deepak Khazanchi

Information Systems and Quantitative Analysis Faculty Publications

The changing marketing landscape has seen the advent and adoption of new tools like shopping apps for consumers. The conventional models which have studied Information Technology (IT) acceptance and adoption by consumers have found that adoption is a function of perceived usefulness and ease of usage. Other models have emphasised Quality, Enjoyment and Trust as significant determinants of the adoption of IT by consumers. Evolution in IT, changing consumer habits, changing demographics and consumer traits make it imperative to rethink pre-existing theories of acceptance and adoption of IT in the context of e-marketing. This paper focuses on the growth of …

Creating Art Patterns With Math And Code, Boyan Kostadinov

Publications and Research

The goal of this talk is to showcase some visualization projects that we developed for a 3-day Code in R summer program, designed to inspire the creative side of our STEM students by engaging them with computational projects that we developed with the purpose of mixing calculus level math and code to create complex geometric patterns. One of the goals of this program was to attract more minority and female students into applied math and computer science majors.

The projects are designed to be implemented using the high-level, open-source and free computational environment R, a popular software in industry for …

Templated Oligosaccharide Synthesis, Jia Guang Xiao

Dissertations

Glycosyl transfer within the active site of an enzyme involves the arrangement of the gly-cosyl donor and glycosyl acceptor in close proximity to each other. To mimic this pro-cess, intramolecular glycosylations are carried out where the donor and acceptor are linked together via a spacer. Correct orientation, rigidity and position of the spacer play a vital role in the selectivity and yield of reactions in this “molecular clamp method”. Though current methodologies show promising results in terms of yield and selectivity, the need to synthesize different complexes to ensure selectivities in all types of glycosidic linkages is a large deterrent …

Improving Proof-Writing With Reading Guides, Mike Janssen

Faculty Work Comprehensive List

One of the barriers in the transition to advanced mathematics is that the proofs and ideas in even the best mathematics texts must be read more carefully than many students are accustomed to. Yet in order to learn to write proofs well, one must learn how to read proofs well. Borrowing an idea from Lewis Ludwig, I flipped my introduction to proofs (discrete structures) course in Spring 2016 with the use of reading guides. Each day, students were responsible for reading a section of the text and completing a worksheet that highlighted the main points, asked students to create their …

Fostering First Graders' Reasoning Strategies With Basic Sums: The Value Of Guided Instruction, David J. Purpura, Arthur J. Baroody, Michael D. Eiland, Erin E. Reid

Purdue Center for Early Learning Faculty and Staff Publications

An intervention experiment served to evaluate the efficacy of highly guided discovery learning of relations underlying add-1 and doubles combination families and to compare the impact of such instruction with minimally guided instruction. After a pretest, 78 first graders were randomly assigned to one of three intervention conditions highly guided add-1, highly guided doubles, or minimally guided add-1 and doubles practice-only. Each highly guided intervention served as an active control for the other. The practice-only intervention served to control for the effects of extra practice. For both the add-1 and the doubles strategies, the highly guided intervention, but not the …

Spectroscopic Orbits For 15 Late-Type Stars, Daryl W. Willmarth, Francis C. Fekel, Helmut A. Abt, Dimitri Pourbaix

Information Systems and Engineering Management Research Publications

Spectroscopic orbital elements are determined for 15 stars with periods from 8 to 6528 days with six orbits computed for the first time. Improved astrometric orbits are computed for two stars and one new orbit is derived. Visual orbits were previously determined for four stars, four stars are members of multiple systems, and five stars have Hipparcos "G" designations or have been resolved by speckle interferometry. For the nine binaries with previous spectroscopic orbits, we determine improved or comparable elements. For HD 28271 and HD 200790, our spectroscopic results support the conclusions of previous authors that the large values of …

Planet Formation Imager (Pfi): Science Vision And Key Requirements, S. Kraus, J. D. Monnier, M. J. Ireland, G. Duchêne, C. Espaillat, S. Hönig, A. Juhasz, C. Mordasini, J. Olofsson, C. Paladini, K. Stassun, N. Turner, G. Vasisht, T. J. Harries, M. R. Bate, J.-F. Gonzalez, A. Matter, Z. Zhu, O. Panic, Z. Regaly, A. Morbidelli, F. Meru, S. Wolf, J. Ilee, J.-P. Berger, M. Zhao, Q. Kral, A. Morlok, A. Bonsor, D. Ciardi, S. R. Kane, K. Kratter, G. Laughlin, J. Pepper, S. Raymond, L. Labadie, R. P. Nelson, G. Weigelt, T. Ten Brummelaar, A. Pierens, R. Oudmaijer, W. Kley, B. Pope, Eric L.N. Jensen, A. Bayo, M. Smith, T. Boyajian, L. H. Quiroga-Nuñez, R. Millan-Gabet, A. Chiavassa, A. Gallenne, M. Reynolds, W.-J. De Wit, M. Wittkowski, F. Millour, P. Gandhi, C. Ramos Almeida, A. Alonso Herrero, C. Packham, M. Kishimoto, K. R. W. Tristram, J.-U. Pott, J. Surdej, D. Buscher, C. Haniff, S. Lacour, R. Petrov, S. Ridgway, P. Tuthill, G. Van Belle, P. Armitage, C. Baruteau, M. Benisty, B. Bitsch, S.-J. Paardekooper, C. Pinte, F. Masset, G. Rosotti

Physics & Astronomy Faculty Works

The Planet Formation Imager (PFI) project aims to provide a strong scientific vision for ground-based optical astronomy beyond the upcoming generation of Extremely Large Telescopes. We make the case that a breakthrough in angular resolution imaging capabilities is required in order to unravel the processes involved in planet formation. PFI will be optimised to provide a complete census of the protoplanet population at all stellocentric radii and over the age range from 0.1 to ~100 Myr. Within this age period, planetary systems undergo dramatic changes and the final architecture of planetary systems is determined. Our goal is to study the …

Synthesis Of Cyclic Enolphosphonates And Enolphosphates As Inhibitors Of Serine Hydrolases, Benjamin Patrick Martin

Dissertations

Cyclophostin is a potent naturally occurring inhibitor of acetylcholinesterase with a novel bicyclic enolphosphate structure. The cyclipostins are a family of potent hormone-sensitive lipase inhibitors which share the same bicyclic enolphosphate core structure with cyclophostin which but differ primarily in that they are long-chain alkyl phosphate esters whereas cyclophostin is a methyl phosphate ester. Due to the novelty of the inhibitor structure, potency, and ability to select between two serine hydrolase enzymes with a simple change in the ester substituent, the ongoing structure activity relationship investigation of this family of inhibitors was continued. Methods of transesterification were investigated in order …

Projective Geometry Hidden Inside: Can You Spot It?, Tom Clark

Faculty Work Comprehensive List

In this talk Dr. Clark shared about a Math Teachers’ Circle session he recently ran centered around the children’s game Spot it! This game has some very interesting mathematics behind it and naturally begs to be explored with inquiry. He described the way he led teachers to ask questions about the game, the way the teachers then explored the topic, and the mathematics behind it all.