Marine Biology Commons^™

Using Long-Term Data From Antarctica To Teach Ocean Acidification, Patrica S. Thibodeau

VIMS Articles

There is a mystery to be solved! This lesson plan asks students to identify the Who, What, When, Where, Why, and How of ocean acidification (OA). Global oceans have absorbed approximately a third of the CO2 produced by human activities, such as burning of fossil fuels, over the past decade (Sabine et al. 2004). This accumulation of CO2 in the ocean has lowered average global ocean pH and decreased the concentration of carbonate ions (CO/ ) (Fabry et al. 2008). As a result of this OA, the carbonate chemistry of the global ocean is rapidly changing and affecting marine organisms …

Comparative Transcriptomics Of Spotted Seatrout (Cynoscion Nebulosus) Populations To Cold And Heat Stress, Jingwei Song, Jan Mcdowell

VIMS Articles

Resilience to climate change depends on a species' adaptive potential and phenotypic plasticity. The latter can enhance survival of individual organisms during short periods of extreme environmental perturbations, allowing genetic adaptation to take place over generations. Along the U.S. East Coast, estuarine‐dependent spotted seatrout (Cynoscion nebulosus) populations span a steep temperature gradient that provides an ideal opportunity to explore the molecular basis of phenotypic plasticity. Genetically distinct spotted seatrout sampled from a northern and a southern population were exposed to acute cold and heat stress (5 biological replicates in each treatment and control group), and their transcriptomic responses …

Translating Globally Threatened Marine Species Information Into Regional Guidance For The Gulf Of Mexico, Kyle Strongin, Beth Polidoro, Christi Linardich, Gina Ralph, Kent Carpenter

Biological Sciences Faculty Publications

A comprehensive understanding of the status of marine organisms in the Gulf of Mexico is critical to the conservation and improved management of marine biodiversity in the region. Threats and extinction risk, based on application of the IUCN Red List Categories and Criteria at the global level, were analyzed for 1,300 Gulf of Mexico marine species. These species include all known marine mammals, sea birds, marine reptiles, cartilaginous fishes, bony shorefishes, corals, mangroves, seagrasses and complete clades of select invertebrates. Analyses showed that 6% of these species are threatened, 2% Near Threatened, 9% Data Deficient, and 83% Least Concern. However, …

Mitochondrial Genomes And Genetic Structure Of The Kemp's Ridley Sea Turtle (Lepidochelys Kempii), Hilary R. Frandsen, Diego F. Figueroa, Jeff A. George

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

The Kemp's ridley (Lepidochelys kempii) is the world's most endangered sea turtle species and is primarily distributed in the Gulf of Mexico. In the United States, South Padre Island, Texas serves as a key nesting ground for the species. Genetic studies of the Kemp's ridley have been used to aid in conservation and management practices, with the mitochondrial control region as the most commonly used marker due to its perceived hypervariability and ease of sequencing. However, with the advent of next generation sequencing technology, targeting complete mitochondrial genomes is now feasible. Here, we describe a more complete mitochondrial genome for …

The First Global Deep-Sea Stable Isotope Assessment Reveals The Unique Trophic Ecology Of Vampire Squid Vampyroteuthis Infernalis (Cephalopoda), A. V. Golikov, F. R. Ceia, R. M. Sabirov, J. D. Ablett, Ian G. Gleadall, Gudmundur Gudmundsson, Henk-Jan T. Hoving, Heather L. Judkins

USF St. Petersburg campus Faculty Publications

Vampyroteuthis infernalis Chun, 1903, is a widely distributed deepwater cephalopod with unique morphology and phylogenetic position. We assessed its habitat and trophic ecology on a global scale via stable isotope analyses of a unique collection of beaks from 104 specimens from the Atlantic, Pacific and Indian Oceans. Cephalopods typically are active predators occupying a high trophic level (TL) and exhibit an ontogenetic increase in δ15N and TL. Our results, presenting the first global comparison for a deep-sea invertebrate, demonstrate that V. infernalis has an ontogenetic decrease in δ15N and TL, coupled with niche broadening. Juveniles are mobile zooplanktivores, while larger …

Temporal Variability Of Polycyclic Aromatic Hydrocarbons In Deep-Sea Cephalopods Of The Northern Gulf Of Mexico, Isabel C. Romero, Heather L. Judkins, Michael Vecchione

USF St. Petersburg campus Faculty Publications

As part of the effort to understand the effects of the Deepwater Horizon Oil Spill (DWHOS), we analyzed tissue from five species of midwater oceanic cephalopods in the northern Gulf of Mexico (GoM) during three time periods, including one period sampled fortuitously just before the spill (2010), and two periods sampled after the spill (2011 and 2015–2016). The species, Japetella diaphana, Abralia redfieldi, Histioteuthis corona, Leachia atlantica, and Onychoteuthis banksii were collected in three geographic areas in the GoM (east, south and southeast of the Macondo wellhead). Results indicate a shift in the composition of polycyclic aromatic hydrocarbons (PAHs) in …

Estimates Of Red Drum Mortality Via Acoustic Telemetry, T. Reid Nelson, Sean P. Powers

University Faculty and Staff Publications

Subadult (age < 3) Red Drum Sciaenops ocellatus support a valuable recreational fishery, and mortality estimates for young Red Drum are needed for proper management. To obtain these estimates, age-1 and age-2 Red Drum were implanted with acoustic transmitters and external Floy tags in two coastal Alabama rivers (Fowl and Dog rivers). Fates of tagged fish were inferred from stationary receiver detections and active relocations over 1 year. These fates were used in a Bayesian multistate model to estimate instantaneous monthly and annual mortality and emigration rates for each river and overall from both rivers. Instantaneous monthly fishing mortality (F) ranged from 0.001 to 0.112 (annual F = 0.414) in Dog River, from 0.001 to 0.126 in Fowl River (annual F = 0.309), and was 0.001–0.054 (annual F = 0.337) overall. Instantaneous monthly natural mortality (M) ranged from 0.001 to 0.002 (annual M= 0.069) in Dog River, from 0.001 to 0.036 (annual M= 0.178) in Fowl River, and from 0.001 to 0.017 (annual M= 0.090) overall. The overall annual estimate of instantaneous total mortality (Z) was 0.435. The median escapement percentage was estimated at 36.3% (95% posterior credible interval = 19.5–56.0%) using M and Z from the overall model. Unfortunately, the error on this estimate was large and inconclusive as to whether the 30% escapement goal for juvenile Red Drum to the adult population from Dog and Fowl rivers is being met. Monthly residency estimates were typically greater than 0.90, and overall annual residency was estimated at 0.716. Fishing mortality estimates from the current study are higher than recent catch curve estimates that did not include young Red Drum. These results demonstrate that young Red Drum need to be accounted for when generating mortality estimates and provide needed data for the Red Drum recreational fishery.

Habitat Associations And Co-Occurrence Patterns Of Two Estuarine-Dependent Predatory Fishes, Mariah C. Livernois, Sean P. Powers, Mark A. Albins, John F. Mareska

University Faculty and Staff Publications

Estuarine-dependent fishes experience a wide range of environmental conditions, and most species exhibit distinct associations with particular habitats. However, similar species or multiple conspecifics often overlap spatiotemporally, which can result in ecological interactions that have consequences for behaviors that can shape the structure and function of ecosystems. We used a long-term gill-net data set (2001–2015) to investigate the habitat associations and cooccurrence patterns of two estuarine-dependent predatory fishes, Red Drum Sciaenops ocellatus and Spotted Seatrout Cynoscion nebulosus, in coastal Alabama, USA. Both species were associated with similar environmental conditions, primarily low dissolved oxygen and low salinity, especially when temperature was …

Bathypelagic Ocean Waters, Christy Linardich, Tracey Sutton, Imants G. Priede, David A. Keith

Marine & Environmental Sciences Faculty Books and Book Chapters

No abstract provided.

Mesopelagic Ocean Waters, Kate E. Watermeyer, Eduard J. Gregr, Ryan R. Rykaczewski, Imants G. Priede, Tracey Sutton, David A. Keith

Marine & Environmental Sciences Faculty Books and Book Chapters

No abstract provided.

Epipelagic Ocean Waters, Kate E. Watermeyer, Ryan R. Rykaczewski, Imants G. Priede, Tracey Sutton, David A. Keith

Marine & Environmental Sciences Faculty Books and Book Chapters

No abstract provided.

Isotopes In The Estuary: Conception And Application Of Stable And Radioactive Carbon, Derek Detweiler

Reports

Grades: 9-12 Subjects: Chemistry | Environmental Science | Oceanography

In this interactive estuary-focused activity, students will examine stable and radioactive isotope data which provide information about the source and age of environmental samples such as plant and soil matter. Students will calculate average isotope ratios from five reference land types (forest, wetland, agriculture, industry, aquatic) and an unknown site within an estuary. Students will graph their calculated ratios and determine the land type that most impacts their estuary based on reference-to-unknown comparisons.

Tiny Killers, Sarah Pease

Reports

Grades: 9-12 Subjects: Biology | Environmental Science | Oceanography

What different methods and new technologies are used to monitor harmful algae and the toxins that they produce?

Students will learn about how harmful algae threaten human health through the processes of bioaccumulation and biomagnification. In small groups, they will design a harmful algae monitoring program based on mock harmful algae data, and then they will test their monitoring program and discover some of the challenges and limitations of any monitoring plan that attempts to measure variable, natural events.

Novel Mechanism For Turning Performance In Bluefin Tuna, Abigail Downs

West Chester University Master’s Theses

Scombrid fishes can attain exceptional swimming speeds due to their thunniform, lift-based propulsion, large muscle mass, and fusiform body shape. A rigid body restricts maneuverability for aquatic organisms. To test if turning maneuvers by the rigid-bodied Pacific bluefin tuna (Thunnus orientalis) are constrained, captive animals were video recorded from above as the animals routinely swam around a large circular tank or during feeding bouts. The turning performance was classified into three different types of turns: 1) glide turn, where the tuna uses the caudal fin as a rudder to passively move through the turn, 2) powered turn, where …

Multivariate Habitat-Based Predictive Modeling Of Three Demersal Rockfish Species In Central California, Georgia R. Martel

Cal Poly Humboldt theses and projects

Accurate, spatially explicit models of rockfish abundance are critical in implementing ecosystem-based management strategies and designating essential fish habitats and marine protected areas. Multibeam bathymetry methods and visual, non-extractive submersible transect surveys were combined to collect environmental variables and fish abundance data at three distinct sites within the study region. Zero-adjusted models were developed using habitat classification analyses of high-resolution (5 m) digital elevation models. Model accuracies were assessed by using a reserved subset of the original datasets. To demonstrate that a model’s predictive power was linked to its spatial origins, Mean Absolute Error and coefficient of determination values were …

Size And Density Of Upside-Down Jellyfish, Cassiopea Sp., And Their Impact On Benthic Fluxes In A Caribbean Lagoon, Chester B. Zarnoch, Noshin Hossain, Erika Fusco, Mary Alldred, Timothy J. Hoellein, Sophia Perdikaris

School of Global Integrative Studies: Faculty Publications

Anthropogenic disturbances may be increasing jellyfish populations globally. Epibenthic jellyfish are ideal organisms for studying this phenomenon due to their sessile lifestyle, broad geographic distribution, and prevalence in near-shore coastal environments. There are few studies, however, that have documented epibenthic jellyfish abundance and measured their impact on ecological processes in tropical ecosystems. In this study, the density and size of the upside-down jellyfish (Cassiopea spp.) were measured in Codrington Lagoon, Barbuda. A sediment core incubation study, with and without Cassiopea, also was performed to determine their impact on benthic oxygen and nutrient fluxes. Densities of Cassiopea were 24–168 …

Targeted “Hotspot” Removal Of Derelict Blue Crab Traps (Va, Md), Kirk J. Havens, Donna Marie Bilkovic, David Stanhope, Kory Angstadt, Andrew M. Scheld

Reports

In the winter of 2019/2020, five commercial watermen spent a cumulative total of 120 removal days on the water and collected 971 derelict blue crab traps which contained 985 blue crabs, 239 fish (oyster toad fish, black sea bass, flounder, pig fish, striped bass, speckled trout, perch, butterfish), 31 diamond back terrapin (a listed “species of concern”), and one duck. A majority of the traps removed were metal as opposed to vinyl coated (83% and 17%, respectively). Bycatch was present in 43% (346) of metal traps and 44% (72) of vinyl coated traps removed. On average, the instantaneous capture rates …

Wave Fever: The Climate Induced Range Expansion Of The Atlantic Marsh Fiddler Crab, Kayla Martinez-Soto

Reports

Grades: 9-12 Subjects: Biology | Environmental Science | Oceanography

In 2014, scientists found that the Atlantic marsh fiddler crab had extended its northern limit by ~90 miles to New Hampshire, which is in the Gulf of Maine. Range expanding species can alter salt marsh characteristics such as biodiversity and food webs. In this lesson, students will combine sea surface temperature data from a federal database and fiddler burrow densities from field photos to determine the relationship between ocean warming and range expansions.

The Potential Impact Of Nuclear Conflict On Ocean Acidification, Nicole S. Lovenduski, Cheryl S. Harrison, Holly Olivarez, Charles G. Bardeen, Owen B. Toon, Joshua Coupe, Alan Robock, Tyler Rohr, Samantha Stevenson

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

We demonstrate that the global cooling resulting from a range of nuclear conflict scenarios would temporarily increase the pH in the surface ocean by up to 0.06 units over a 5-year period, briefly alleviating the decline in pH associated with ocean acidification. Conversely, the global cooling dissolves atmospheric carbon into the upper ocean, driving a 0.1 to 0.3 unit decrease in the aragonite saturation state (Ωarag) that persists for ∼10 years. The peak anomaly in pH occurs 2 years post conflict, while the Ωarag anomaly peaks 4- to 5-years post conflict. The decrease in Ωarag would exacerbate a primary threat …

New County Records Of Amphibians And Reptiles From South Texas, Usa, Clinton J. Guadiana, Padraic S. Robinson, Matthew S. Schalk, Drew R. Davis

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Several species of amphibians and reptiles reach their northern range limit in south Texas, USA. Herpetological research in the area, as well as frequent visits from amphibian and reptile enthusiasts, have helped to form a more complete understanding of amphibian and reptile distributions across the region. However, gaps in the recognized distribution of many species remain. Efforts to better document species occurrence are confounded by the lack of public land and the fact that most of south Texas is privately owned, making access to suitable habitat difficult (Schmidly et al. 2001)