Marine Biology Commons^™

A Drone-Based Survey For Large, Basking Freshwater Turtle Species, Amy P. Bogolin, Drew R. Davis, Richard Kline, Abdullah Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Conservation concerns are increasing for numerous freshwater turtle species, including Pseudemys gorzugi, which has led to a call for more research. However, traditional sampling methodologies are often time consuming, labor intensive, and invasive, restricting the amount of data that can be collected. Biases of traditional sampling methods can further impair the quality of the data collected, and these shortfalls may discourage their use. The use of unmanned aerial vehicles (UAVs, drones) for conducting wildlife surveys has recently demonstrated the potential to bridge gaps in data collection by offering a less labor intensive, minimally invasive, and more efficient process. Photographs and …

Implications Of Community-Based Management Of Marine Reserves In The Philippines For Reef Fish Communities And Biodiversity, Sara E. Marriott, Courtney Cox, Rizaller C. Amolo, Dean Apistar, Roquelito H. Mancao, Kim De Mutsert

Faculty Publications

Overfishing and destructive fishing practices are major threats to marine biodiversity in the Philippines, where over 1.9 million small-scale fishers are supported by these biodiverse marine communities. Nearly 50% of all marine fish capture in the Philippines is from artisanal fisheries, with much of it not reported or under-reported. Marine reserves, where fishing is prohibited have been created in many local government units to help restore and preserve this biodiversity. The success of these marine reserves is still under serious debate with effective management still representing a significant challenge. The lack of a governance system to centrally managed marine reserves …

Rebecca Fillyaw Ms Thesis Data For Publication In The Journal Sustainability, Rebecca Fillyaw, Melinda Donnelly, Linda Walters

CEELAB Research Data

By combatting erosion and increasing habitat, mangrove living shorelines are an effective alternative to hard-armoring in tropical and subtropical areas. An experimental red mangrove living shoreline was deployed within Mosquito Lagoon, Florida, using a factorial design to test the impact of mangrove age, breakwater presence, and mangrove placement on mangrove survival within the first year of deployment. Mixed mangrove age treatments were included to identify if seedling (11-month-old) survival could be enhanced by the presence of transitional (23-month-old) and adult (35 to 47-month-old) mangroves. Environmental factors were monitored to detect possible causes of mangrove mortalities. Approximately half (50.6%) of mangroves …

Complete Mitochondrial Genomes Of Two Species Of Stichopathes Brook, 1889 (Hexacorallia: Antipatharia: Antipathidae) From Rapa Nui (Easter Island), Cynthia M. Asorey, Javier Sellanes, Daniel Wagner, Erin E. Easton

School of Earth, Environmental, & Marine Sciences Faculty Publications

We report the complete mitochondrial genomes of two antipatharian species, Stichopathes sp. SCBUCN-8849 and Stichopathes sp. SCBUCN-8850, collected between 120 and 180 m depth off Rapa Nui (∼ −27.1°, −109.4°). The size of the two mitogenomes are 20,389 bp (29.0% A, 15.2% C, 19.9% G, and 35.9% T) and 20,463 bp (29.0% A, 15.3% C, 19.9% G, and 35.8% T), respectively. Both mitogenomes have the classic Hexacorallia gene content of 13 protein-coding, two rRNA, and two tRNA genes plus a COX1 intron with embedded HEG as found in the Antipathidae and other antipatharian families.

Land-Use Dynamics Associated With Mangrove Deforestation For Aquaculture And The Subsequent Abandonment Of Ponds, Aslan Aslan, Abdullah F. Rahman, Scott M. Robeson, Muhammad Ilman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Highlights

• SAR data is useful for tracking dynamic changes in mangrove ecosystem.

• Time series SAR data can be used to estimate lifespan of pond.

• During 22+ years, over half of the mangrove forest in Mahakam Delta has been converted to aquaculture.

Abstract

The objective of this study was to evaluate the spatiotemporal dynamics of large area mangrove deforestation, aquaculture pond building, and the subsequent abandonment of ponds in a large delta in Indonesia, namely the Mahakam Delta. So, we developed and applied a novel methodology for exploring the lifespan of aquaculture ponds. Using historical multispectral and radar data, the …

Climate Process Team: Improvement Of Ocean Component Of Noaa Climate Forecast System Relevant To Madden-Julian Oscillation Simulations, Toshiaki Shinoda, Suyang Pei, Wanqiu Wang, Joshua X. Fu, Ren-Chieh Lien, Hyodae Seo, Alexander Soloviev

Marine & Environmental Sciences Faculty Articles

Given the increasing attention in forecasting weather and climate on the subseasonal time scale in recent years, National Oceanic and Atmospheric Administration (NOAA) announced to support Climate Process Teams (CPTs) which aim to improve the Madden-Julian Oscillation (MJO) prediction by NOAA’s global forecasting models. Our team supported by this CPT program focuses primarily on the improvement of upper ocean mixing parameterization and air-sea fluxes in the NOAA Climate Forecast System (CFS). Major improvement includes the increase of the vertical resolution in the upper ocean and the implementation of General Ocean Turbulence Model (GOTM) in CFS. In addition to existing mixing …

Squid And Cuttlefish Resources Of Western Australia, Daniel Yeoh, Danielle Johnston, David C. Harris

Fisheries Research Reports

This report provides a description and assessment of the squid and cuttlefish resources of Western Australia, and all of the fishing activities (i.e. fisheries / fishing sectors) affecting these resources. Encompassed are multiple species in the orders Oegopsida and Myopsida (squid or ‘calamari’) and Sepiida (cuttlefish), including; southern calamari (Sepioteuthis australis), northern calamari (Sepioteuthis lessoniana), Gould’s squid (Nototodarus gouldi), loligo squids Uroteuthis (Photololigo) spp.,giant cuttlefish (Sepia apama), broadclub cuttlefish (Sepia latimanus) and pharaoh cuttlefish (Sepia pharaonis).

Fisheries Science Update – October 2021: West Coast Demersal Scalefish Resource, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

Key points: 2021 stock assessment outcomes • The West Coast Demersal Scalefish Resource (WCDSR) is halfway into a 20-year recovery plan following a period of overfishing in the 1990s and 2000s. • This latest assessment provides an important “health check” on the recovery status. • The recovery plan is based on maintaining recreational (including charter) and commercial sector’s total fishing mortality below catch limits and protecting key spawning aggregations to recover the WCDSR by 2030. • The Department of Primary Industries and Regional Development (DPIRD) tracks recovery progress by undertaking weight of evidence stock assessments of WCDSR indicator species dhufish …

Sperm Repository For A Breeding Program Of The Eastern Oyster Crassostrea Virginica: Sample Collection, Processing, Cryopreservation, And Data Management Plan, Huiping Yang, Yuanzi Huo, Jayme C. Yee, Scott Rikard, William C. Walton, Eric A. Saillant

Faculty Publications

The Eastern oyster Crassostrea virginica (Family Ostreidae) is one of the most important fishery and aquaculture species in the U.S. and is a keystone species for coastal reefs. A breeding program was initiated in 2019 to support the fast-growing aquaculture industry culturing this species in the Gulf of Mexico. Oysters from 17 wild populations in embayment along the U.S. Gulf of Mexico coast from southwest Florida to the Matagorda Bay, Texas were used as broodstock for the program to maximize genetic diversity in the base population. A sperm repository of the broodstock was established to support the breeding project. The …

The Influence Of Bottom Type And Water Column Stratification On Reef Fish Community Structure At Gray’S Reef National Marine Sanctuary, Bridget Campbell

Honors Theses

Understanding the physical and oceanographic differences across reef habitats can help researchers assess how those differences influence fish distribution and community structure, which leads to a better understanding of what a healthy reef system looks like. The traditional methods used to assess fish communities on temperate reefs are limited and often focus solely on either the reef structure or water column conditions alone. An assessment of both data sets yields a more complete understanding of the ecosystem as a whole. In this study, Gray’s Reef National Marine Sanctuary (GRNMS) was surveyed both inside and outside a Marine Protected Area (MPA) …

Spatial And Temporal Variability In Carbon And Nutrient Concentrations Within The North Inlet Estuary,Sc, Heather Kish

Theses and Dissertations

Coastal wetlands provide numerous ecosystem services, including the ability to sequester and store significant amounts of organic carbon (so-called “blue carbon”). Variability in carbon storage within marshes represents a major information gap in understanding and quantifying the role saltmarshes play in the global carbon cycle. This study quantified decadal and small-scale variability in carbon and nutrient concentrations across tidal inundation gradients in the relatively pristine North Inlet Estuary, South Carolina. Sampling took place within two segments of the marsh platform of Crab Haul Creek, the landward-most basin within North Inlet. In the summer of 2020, a total of 200 sediment …

Integrated Analyses Of Snp-Genotype And Environmental Data In A Continuously Distributed Snapper Species (Lutjanus Johnii, Bloch, 1792) Reveals A Mosaic Of Populations And A Challenge For Sustainable Management, Laura Taillebois, Danielle Davenport, Diane P. Barton, David Alexander Cook, Thor Saunders, Mark Hearnden, Richard J. Saunders, Stephen J. Newman, Michael J. Travers

Fisheries Research Articles

Understanding population structure is important for predicting the outcomes of anthropogenic development, harvest, and environmental change on the abundance of fisheries species. Logically, the use of several data sources is best for delineating population structure, but combining across data types adds extra challenges as results can be incongruent. Here, genetic and environmental markers were used to test hypotheses about population structure in a collection of 523 tropical inshore finfish (Lutjanus johnii) across northern Australia from 20 locations. Redundancy analyses (RDA) were used to statistically test for correlations among data sources providing a basis for reconciliation and insights into ecological and …

Assessing Changes In Clusters Of Wildlife Road Mortalities After The Construction Of Wildlife Mitigation Structures, Thomas J. Yamashita, Trinity D. Livingston, Kevin W. Ryer, John H. Young Jr., Richard Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

Collisions with vehicles can be a major threat to wildlife populations, so wildlife mitigation structures, including exclusionary fencing and wildlife crossings, are often constructed. To assess mitigation structure effectiveness, it is useful to compare wildlife road mortalities (WRMs) before, during, and after mitigation structure construction; however, differences in survey methodologies may make comparisons of counts impractical. Location-based cluster analyses provide a means to assess how WRM spatial patterns have changed over time. We collected WRM data between 2015 and 2019 on State Highway 100 in Texas, USA. Five wildlife crossings and exclusionary fencing were installed in this area between September …

Sensitivity Of Aquatic Organic Matter Degradation To Changing Temperature And Nutrient Conditions In A Coastal Watershed, Curtis John Szewczyk

Theses and Dissertations

The degradation of organic matter (OM) within inland waters plays a pivotal role in the global carbon cycle and quantifying carbon budgets. Here, measurements of dissolved oxygen (DO) decay rates were used to infer the extent and kinetics of OM degradation under variable conditions. The goal of the investigation was to quantify how OM samples within the Waccamaw River watershed, South Carolina, respond to changes in temperature and nutrient availability as a function of their source location and lability. Samples were collected from urbanized stormwater detention ponds and undeveloped upland forested wetland drainages to provide contrasting and distinct OM sources …

Characterizations Of Dissolved Organic Carbon At Hydrothermal Systems Of The Midcayman Rise, Aaron Mau

Theses and Dissertations

Marine dissolved organic carbon (DOC) is a carbon reservoir comparable in size to all atmospheric CO2 and is composed primarily of refractory material which can be thousands of years old. Circulation through hydrothermal systems has been demonstrated to profoundly alter this material, but the mechanisms that lead to addition, removal, and alteration of DOC are poorly understood. Consequently, the contribution of hydrothermal systems to organic carbon cycling in the deep ocean – and the biological and geochemical processes exhibited at different venting environments – remain highly uncertain.

In January 2020, samples were collected from two hydrothermal vent fields at the …

Using Ecological Diversity Analyses To Characterize The Availability Of Healthy Food And Socio-Economic Food Deserts, Annie Goyanes, J. Matthew Hoch

Marine & Environmental Sciences Faculty Articles

“Food deserts” are usually defined as geographic areas without local access to fresh, healthy food. We used community ecology statistics in supermarkets to quantify the availability of healthy food and to potentially identify food deserts as areas without a diverse selection of food, rather than a binary as to whether fresh food is present or not. We test whether produce diversity is correlated with neighborhood income or demographics. Abundance and diversity of fresh produce was quantified in supermarkets in Broward County, Florida, USA. Neighborhood income level and racial/ethnic makeup were retrieved from the U.S. Census and American Community Survey. Although …

Megafauna Of The German Exploration Licence Area For Seafloor Massive Sulphides Along The Central And South East Indian Ridge (Indian Ocean), Klaas Gerdes, Terue Cristina Kihara, Pedro Martínez Arbizu, Thomas Kuhn, Ulrich Schwarz-Schampera, Christopher L. Mah, Jon L. Norenburg, Thomas D. Linley, Kate Shalaeva, Enrique Macpherson, Dennis Gordon, Sabine Stöhr, Charles G. Messing, Simon Bober, Theresa Guggolz, Magdalini Christodoulou, Andrey Gebruk, Antonina Kremenetskaia, Andreas Kroh, Karen Sanamyan, Kathrin Bolstad, Leon Hoffman, Andrew J. Gooday, Tina Molodtsova

Marine & Environmental Sciences Faculty Articles

Background

The growing interest in mineral resources of the deep sea, such as seafloor massive sulphide deposits, has led to an increasing number of exploration licences issued by the International Seabed Authority. In the Indian Ocean, four licence areas exist, resulting in an increasing number of new hydrothermal vent fields and the discovery of new species. Most studies focus on active venting areas including their ecology, but the non-vent megafauna of the Central Indian Ridge and South East Indian Ridge remains poorly known.

In the framework of the Indian Ocean Exploration project in the German license area for seafloor massive …

Metabolomics Of Healthy And Stony Coral Tissue Loss Disease Affected Montastraea Cavernosa Corals, Jessica M. Deutsch, Olakunle A. Jaiyesimi, Kelly A. Pitts, Jay Houk, Blake Ushijima, Brian K. Walker, Valerie J. Paul, Neha Garg

Marine & Environmental Sciences Faculty Articles

Stony coral tissue loss disease, first observed in Florida in 2014, has now spread along the entire Florida Reef Tract and on reefs in many Caribbean countries. The disease affects a variety of coral species with differential outcomes, and in many instances results in whole-colony mortality. We employed untargeted metabolomic profiling of Montastraea cavernosa corals affected by stony coral tissue loss disease to identify metabolic markers of disease. Herein, extracts from apparently healthy, diseased, and recovered Montastraea cavernosa collected at a reef site near Ft. Lauderdale, Florida were subjected to liquid-chromatography mass spectrometry-based metabolomics. Unsupervised principal component analysis reveals wide …

Editorial: Unraveling Mechanisms Underlying Annual Plankton Blooms In The North Atlantic And Their Implications For Biogenic Aerosol Properties And Cloud Formation, Michael Behrenfeld, Sarah D. Brooks, Peter Gaube, Kristina D.A. Mojica

Faculty Publications

No abstract provided.

The Design, Production And Validation Of The Biological And Structural Performance Of An Ecologically Engineered Concrete Block Mattress – A Nature Inclusive Design For Shoreline And Offshore Construction, Ido Sella, T. Hadary, A. Rella, Bernhard Riegl, Denise Swack, S. Perkol-Finkel

Marine & Environmental Sciences Faculty Articles

Over the past decade, the scientific community has studied, experimented, and published a notable body of literature on ecological enhancement of coastal and marine infrastructure (CMI). The Nature-Inclusive Design (NID) approach refers to methods and technologies that can be integrated into the design and construction of CMI to create suitable habitat for native species (or communities) whose natural habitat has been degraded or reduced. To examine the compliance of new environmentally sensitive technologies with structural requirements and fiscal restraints, while providing ecosystem and habitat value, this paper presents the findings of a structural-economical-biological analysis of ecologically engineered Articulated Concrete Block …