Biodiversity Commons^™

Annotation Of Non-Model Species’ Genomes, Taiya Jarva

Master's Theses

The innovations in high throughput sequencing technologies in recent decades has allowed unprecedented examination and characterization of the genetic make-up of both model and non-model species, which has led to a surge in the use of genomics in fields which were previously considered unfeasible. These advances have greatly expanded the realm of possibilities in the fields of ecology and conservation. It is now possible to the identification of large cohorts of genetic markers, including single nucleotide polymorphisms (SNPs) and larger structural variants, as well as signatures of selection and local adaptation. Markers can be used to identify species, define population …

Illuminating The Drivers Of Genomic Diversification In Lamprologine Cichlids Of The Lower Congo River, Naoko P. Kurata

Dissertations, Theses, and Capstone Projects

Freshwater fishes are extraordinarily diverse, considering their available habitats represent a tiny proportion of the earth’s surface. Rivers connect heterogeneous habitats in a linear form and provide excellent simplified models to understand how aquatic biodiversity evolves. In particular, the lower Congo River (LCR) in west Central Africa consists of a dynamic hydroscape exhibiting extraordinary aquatic biodiversity, endemicity, and morphological and ecological specialization. This system is thus an excellent natural laboratory for understanding complex speciation and population diversification processes. In my research, I explore various drivers of diversification, and adaptive evolution in rheophilic lamprologine cichlids endemic to the LCR, including Lamprologus …

Androctonus Kunti Sp. N. From Iğdır Province, Turkey (Scorpiones: Buthidae), Ersen A. Yağmur

Euscorpius

A new species Androctonus kunti sp. n. is described and illustrated from Iğdır Province of Turkey. This population was first recorded by Birula (1896) as A. crassicauda (Olivier, 1807). A. kunti sp. n. is compared with A. crassicauda as well as A. turkiyensis Yağmur, 2021, which was recently described from Turkey

Practical Solutions To The Invasion Of Lionfish In Utila, Honduras: Science, Education, Food, And Jewelry, Carolyn Corley

Undergraduate Honors Theses

Lionfish (Pterois sp.) are invasive species capable of devastating coral reef ecosystems due to their lack of predators, large appetites, generalist diet, high fecundity, and rapid spawning rates. As lionfish have expanded their distribution across the Caribbean, many conservation groups have taken it upon themselves to systematically remove these predators from environments where they are threatening native species. However, few have involved the community the way I observed while interning with the Whale Shark and Oceanic Research Center in Utila, Honduras. Protecting coral reefs is extremely important, especially in small communities like Utila, where the majority of people’s …

Eco-Interoception: What Plants, Fungi And Protista Have Taught My Body, Sara Riley Dotterer

Art Theses and Dissertations

To me, ecology is the relational, full-body awareness that I am made up of and deeply connected to everything around me; and for better or worse, this is reciprocal. I form ecotones, an ecological transitional zone between two ecosystems, with the world around me. I use this ecotonal lens to blur binaries and dissolve boundaries between me and the world “outside my body.” During my Masters of Fine Arts at Southern Methodist University, I have continuously explored and represented the lives of various more-than-human species outside of my body, including plants, fungi and protista through an ecotonal lens. Although these …

The Response Of An Avian Community To Intercropping And Forest Management Practices In A Private Working Pine Forest, Rebecca Doyne Bracken

Theses and Dissertations

Within managed pine forest systems, a plethora of bird species exist throughout the lifecycle of a stand akin to what may be experienced through post-disturbance regeneration in a natural forest system. I sought to address how breeding avian communities shift across time in response to stand aging and forest management, evaluate species-specific responses to stand conditions, investigate the responses of at-risk avian species to forest management, and determine avian non-breeding, over-wintering presence in a managed loblolly pine (Pinus taeda) forest. I conducted breeding bird point count and vegetation surveys within five stands of privately owned and managed pine forest in …

Aspects Of Distribution, Abundance, Habitat, And Life History Of The Caddo Madtom (Noturus Taylori), A Narrow Endemic Of The Ouachita Highlands, Brittany L. Mccall, Brook L. Fluker

Southeastern Fishes Council Proceedings

The Caddo Madtom, Noturus taylori, is a small catfish endemic to the Ouachita Mountain ecoregion in Arkansas, with habitat altered by land use practices and reservoir dams. We examined aspects of distribution, abundance, habitat, and life history of N. taylori during seasonal sampling from winter 2016 through fall 2017. Our sampling data were concordant with previous studies that suggested N. taylori is more widespread and has higher catch per unit effort in the Caddo River drainage when compared to the upper Ouachita River drainage. We did not detect N. taylori in the Little Missouri River drainage, where it is …

Helminth Parasites Of The Giant Toad, Rhinella Horribilis (Wiegmann, 1833) (Anura: Bufonidae) From Central Mexico, Jorge Falcón-Ordaz, Cristian Raúl Olvera-Olvera, Marisol Moreno-Chávez, Griselda Pulido-Flores, Scott Monks, Luis García-Prieto

MANTER: Journal of Parasite Biodiversity

As part of an ongoing project to inventory the helminth parasites of amphibians from the state of Hidalgo, Central Mexico, specimens of Rhinella horribilis were collected from three municipalities: Eloxochitlán, Huehuetla, and San Felipe Orizatlán. A total of eight taxa of helminths were found: three digeneans (Haematoloechus sp., Langeronia macrocirra, and Mesocoelium danforthi) and five nematodes (Cosmocerca sp., Cruzia morleyi, Ochoterenella chiapensis, Oswaldocruzia subauricularis, and Rhabdias sp.). The highest species richness was recorded in Huehuetla. All reports of these species of helminths represent new locality records for Mexico.

Detecting Native Freshwater Mussels In Pennsylvania Waterways: Comparison & Validation Of Environmental Dna Methods, Meredith Bennett

Electronic Theses and Dissertations

North America is home to approximately one third of the world's freshwater mussel species. They are highly imperiled organisms due to habitat destruction and invasive species. Traditional surveys rely on visual identification of mussels, but individuals tend to be rare and difficult to identify. An alternative method is to extract environmental DNA (eDNA) from water samples, which has advantages over traditional sampling, including less sampling effort and fewer hazards to researchers and organisms. We conducted a review of the two main eDNA approaches: single-species detection and metabarcoding. We also developed and validated metabarcoding primers for the detection of native mussels. …

I’Ll Be Goldenrod And You’Ll Be Aster: The Case For Revolutionizing Western Methods Of Teaching Using Indigenous Ontologies, Joanna Logerfo

Master's Theses

An interesting facet of living as a human in the 21st century is contending with the end of the world. It’s been imagined in a thousand ways over the past twenty years. Will it be zombies? Aliens? An AI revolution? Or will it perhaps be something more mundane, more “down-to-Earth”? The floods, the droughts, the famines, and all the rest of the cataclysmic global events that occur every year have taken center stage in the world-ending debate, parading under a name as threatening and expansive as the Boogeyman: climate change. A recent article from NPR covered the United Nations’ 2022 …

Exploring A Potential Bias In Detection Of Mesopredators By Cameras, Rylee Gibson

Biological Sciences Undergraduate Honors Theses

Mesopredators, such as the raccoon (Procyon locor), Virginia opossum (Didpelphis virginiana), and striped skunk (Mephitis mephitis) play crucial ecological roles as predators, prey, and disease vectors across much of the United States. Because of their importance and the way that populations of these mesopredators can dramatically increase due to human-subsidized resources, it is imperative that studies attempting to quantify mesopredator community composition are accurate and unbiased. However, it has recently been suggested that not all mammals trigger motion-activated wildlife game cameras at the same rate and for some species detection probability may be biased. My goals for this thesis were …

Patterns And Sources Of Variation In Heterospecific Pollen Deposition In Flowers Of The Native Blue Cardinal Flower (Lobelia Siphilitica), Allie Drinnon

Undergraduate Honors Theses

Plants species interactions via pollinators are a model system to understand the mechanisms that generate plant diversity in nature. However, most studies have focused on plant-plant interactions via pollinator attraction while ignoring the role of plant-plant interactions via pollen transfer. Heterospecific pollen transfer (henceforth HP) can be common and have negative fitness effects. Negative HP fitness effects may prompt the evolution of adaptive strategies to minimize them. However, the extent of spatial variation in HP load size within and among populations, a tenet for natural selection, remains unexplored. Such knowledge would hence constitute a first step in advancing our understanding …

Seed & Story Conservation: A Rooted Historical Documentation And Analysis Of Living Seed Stories In The Us Northeast, Celia Luanna Nesbitt

Food Systems Master's Project Reports

Often a neglected item in our current industrialized food system, seed is now typically seen as a commodity. Agrobiodiversity is in decline with diverse crop varieties being lost from cultivation and memory, further threatening levels of biodiversity. Research indicates that seed systems are crucial for the conservation of crop diversity and local adaption of cultivars. Globally, people are working to grow and share seeds that support seed production based around the premises of community-based production and (agro)biodiversity. This project and paper draw attention to the regional seed work in the US Northeast. Through a participatory approach, and an active participation …

The Bellarmine Bee Bed: Organizing A Native Plant Garden Using Feedback From The Local Community, Kate Moran

Undergraduate Theses

Animal pollinators are the cornerstone of healthy ecosystems. Their survival is essential for the persistence of entire food chains: from the flowers they cross-pollinate directly, to the animals who depend on those plants for nutrition. The establishment of pollinator gardens—particularly ones that consist of native plants—is an effective way to enhance their biodiversity, abundance, and well-being.

The main goal of this thesis is to construct a pollinator garden that maximizes the benefits for animal pollinators using feedback from local gardeners. A survey was used to gather information about the popularity and preferences of 40 flowering plants, and after analyzing the …

Marine Law Symposium: Can Offshore Wind Development Have A Net Positive Impact On Biodiversity? Regulatory And Scientific Perspectives And Considerations April 20-21, 2023, Roger Williams University School Of Law Marine Affairs Institute, The Nature Conservancy

School of Law Conferences, Lectures & Events

No abstract provided.

Darwin Core Archive File, Stover-Ebinger Herbarium, Eastern Illinois University

Darwin Core Archive Download

ZIP file contains occurrences.csv, identivications.csv, and images.csv. The meta.xml document describes the content. Fields within the occurrences.csv file are defined by the Darwin Core exchange standard.

This file is updated as new occurrence records are added.

A New Monotypic Genus And Species From China, Langxie Feti Gen. Et Sp. N. (Scorpiones: Buthidae), Victoria Tang, Qingquan Jia, Leonhard Liu

Euscorpius

A new monotypic genus, Langxie gen. n., is described from Xizang (Tibet), China. The new genus shares an important morphological character with Afrolychas Kovařík, 2019: absence of external accessory denticles (EADs) along the sixth row of median denticles (MDs) on the pedipalp movable finger. Langxie gen. n. is different from Afrolychas in the following aspects: loss of EAD near the proximally enlarged MD within each row (i. e., loss of all EAD on the movable finger; this also distinguishes the new genus from other related genera in the “(Ananteris + Isometrus)” clade (Štundlová et …

Benthic Beasts: The Ecological Significance Of Lake Sturgeon And Blue Catfish In Eastern Appalachian Waterways, Stewart Thacker

Research Day

East Tennessee freshwater ecosystems comprise an abundance of an extremely diverse selection of species. This presentation examines Acipenser fulvescens and Ictalurus furcatus, two of the largest freshwater fish in the Appalachian area, which play significant ecological roles within the benthic dimension of our freshwater environments. Commonly known as “bottom-feeders,” Benthivorous species enjoy a broad range of food sources including other fish, detritus, crustaceans, and more. The extensive variety of food consumed by A. fulvescens and I. furcatus permits population control of other, denser, aquatic populations inhabiting other regions of the water column, as well as other organisms included …

Molecular Biodiversity Of Foraminifera, Rabindra Thakur

Masters Theses

Foraminifera are a diverse clade of mostly shell-building single-celled organisms. Estimation of foraminiferal diversity is critical for understanding past and present climatic conditions, as they are highly sensitive to environmental perturbations. Biodiversity estimates of foraminifera began with the counting of test (i.e., shell) microfossils composed of calcium carbonate, as they are well preserved in sediment samples. However, this view has changed with molecular biodiversity estimates, which suggest that early-diverging single-chamber (i.e., "monothalamid") species that lack preservation ability are more diverse than anticipated. Although biodiversity estimates of foraminifera at the molecular level have changed our perceptions, they possess various challenges, especially …

A Diverse Flea (Siphonaptera) Assemblage From The Small Mammals Of Central New Mexico, Dianne E. Peterson, Jonathan L. Dunnum, Schuyler W. Liphart, Karen A. Boegler, Ralph P. Eckerlin, Eric P. Hoberg, Martha O. Perez-Arriaga, Katrina Derieg, David Garnand, Mariel L. Campbell, Joseph A. Cook

MANTER: Journal of Parasite Biodiversity

The geographical ranges of many mammals and their associated parasites are dynamic. Comprehensive documentation of these communities over time provides a foundation for interpreting how changing environmental conditions, driven by accelerating climate change, other anthropogenic disturbances, and natural events, may influence host-parasite interactions. Fleas (Order Siphonaptera) are obligate, hematophagous parasites of birds and mammals with medical interest because of their role in transmitting pathogens. From 2016 to 2019, we sampled the small mammal and associated flea communities in El Malpais National Conservation Area (El Malpais) in Cibola County, New Mexico. Among 898 mammalian specimens, 925 fleas representing 29 species were …