Marine Biology Commons^™

Disentangling Diverse Responses To Climate Change Among Global Marine Ecosystem Models, Ryan F. Heneghan, Eric Galbraith, Julia L. Blanchard, Cheryl S. Harrison, Nicolas Barrier, Catherine Bulman, William Cheung, Marta Coli, Tyler D. Eddy, Maite Erauskin-Extramiana

School of Earth, Environmental, & Marine Sciences Faculty Publications

Climate change is warming the ocean and impacting lower trophic level (LTL) organisms. Marine ecosystem models can provide estimates of how these changes will propagate to larger animals and impact societal services such as fisheries, but at present these estimates vary widely. A better understanding of what drives this inter-model variation will improve our ability to project fisheries and other ecosystem services into the future, while also helping to identify uncertainties in process understanding. Here, we explore the mechanisms that underlie the diversity of responses to changes in temperature and LTLs in eight global marine ecosystem models from the Fisheries …

Overfishing Drives Over One-Third Of All Sharks And Rays Toward A Global Extinction Crisis, Nicholas K. Dulvy, Nathan Pacoureau, Cassandra L. Rigby, Riley A. Pollom, Rima W. Jabado, David A. Ebert, Brittany Finucci, Caroline M. Pollock, Jessica Cheok, Danielle H. Derrick, Katelyn B. Herman, C. Samantha Sherman, Wade J. Vanderwright, Julia M. Lawson, Rachel H.L. Walls, John K. Carlson, Patricia Charvet, Kinattumkara K. Bineesh, Daniel Fernando, Gina M. Ralph, Jay H. Matsushiba, Craig Hilton-Taylor, Sonja V. Fordham, Colin A. Simpfendorfer

Biological Sciences Faculty Publications

The scale and drivers of marine biodiversity loss are being revealed by the International Union for Conservation of Nature (IUCN) Red List assessment process. We present the first global reassessment of 1,199 species in Class Chondrichthyes-sharks, rays, and chimeras. The first global assessment (in 2014) concluded that one-quarter (24%) of species were threatened. Now, 391 (32.6%) species are threatened with extinction. When this percentage of threat is applied to Data Deficient species, more than one-third (37.5%) of chondrichthyans are estimated to be threatened, with much of this change resulting from new information. Three species are Critically Endangered (Possibly Extinct), representing …

Nutrient Cycling In Tropical And Temperate Coastal Waters: Is Latitude Making A Difference?, Christian Lønborg, Moritz Müller, Edward C. V. Butler, Shan Jiang, Seng Keat Ooi, Dieu Huong Trinh, Pui Yee Wong, Suryati M. Ali, Chun Cui, Wee Boon Siong, Erik S. Yando, Daniel A. Friess, Judith A. Rosentreter, Bradley D. Eyre, Patrick Martin

Biological Sciences Faculty Publications

Tropical coastal waters are highly dynamic and amongst the most biogeochemically active zones in the ocean. This review compares nitrogen (N) and phosphorus (P) cycles in temperate and tropical coastal waters. We review the literature to identify major similarities and differences between these two regions, specifically with regards to the impact of environmental factors (temperature, sunlight), riverine inputs, groundwater, lateral fluxes, atmospheric deposition, nitrogen fixation, organic nutrient cycling, primary production, respiration, sedimentary burial, denitrification and anammox. Overall, there are some similarities but also key differences in nutrient cycling, with differences relating mainly to temperature, sunlight, and precipitation amounts and patterns. …

Understanding Human Impacts On The Marine Environment In Fiji : Insights From An Odemm Conceptual Model And Semi-Structured Interviews, Alumita Talei Sekinairai

World Maritime University Dissertations

No abstract provided.

An Assessment Of The Marine Protected Area Ecological Monitoring Framework In Kenya, Tracy Masicha Wafula

World Maritime University Dissertations

No abstract provided.

Climate-Assisted Persistence Of Tropical Fish Vagrants In Temperate Marine Ecosystems, Laura Gajdzik, Thomas M. Decarlo, Adam Koziol, Mahsa Mousavi-Derazmahalleh, Megan Coghlan, Matthew W. Power, Michael Bunce, David Fairclough, Michael J. Travers, Glenn I. Moore, Joseph D. Dibattista

Fisheries Research Articles

Rising temperatures and extreme climate events are propelling tropical species into temperate marine ecosystems, but not all species can persist. Here, we used the heatwave-driven expatriation of tropical Black Rabbitfish (Siganus fuscescens) to the temperate environments of Western Australia to assess the ecological and evolutionary mechanisms that may entail their persistence. Population genomic assays for this rabbitfish indicated little genetic differentiation between tropical residents and vagrants to temperate environments due to high migration rates, which were likely enhanced by the marine heatwave. DNA metabarcoding revealed a diverse diet for this species based on phytoplankton and algae, as well …

Moving Conferences Online: Lessons Learned From An International Virtual Meeting, Paris V. Stefanoudis, Leann M. Biancani, Sergio Cambronero-Solano, Malcolm R. Clark, Jonathan T. Copley, Erin E. Easton, Franziska Elmer, Steven H. D. Haddock, Santiago Herrera, Ilysa S. Iglesias

School of Earth, Environmental, & Marine Sciences Faculty Publications

We consider the opportunities and challenges associated with organizing a conference online, using a case study of a medium-sized (approx. 400 participants) international conference held virtually in August 2020. In addition, we present quantifiable evidence of the participants’ experience using the results from an online post-conference questionnaire. Although the virtual meeting was not able to replicate the in-person experience in some aspects (e.g. less engagement between participants) the overwhelming majority of respondents found the meeting an enjoyable experience and would join similar events again. Notably, there was a strong desire for future inperson meetings to have at least some online …

A Drone-Based Survey For Large, Basking Freshwater Turtle Species, Amy P. Bogolin, Drew R. Davis, Richard Kline, Abdullah Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Conservation concerns are increasing for numerous freshwater turtle species, including Pseudemys gorzugi, which has led to a call for more research. However, traditional sampling methodologies are often time consuming, labor intensive, and invasive, restricting the amount of data that can be collected. Biases of traditional sampling methods can further impair the quality of the data collected, and these shortfalls may discourage their use. The use of unmanned aerial vehicles (UAVs, drones) for conducting wildlife surveys has recently demonstrated the potential to bridge gaps in data collection by offering a less labor intensive, minimally invasive, and more efficient process. Photographs and …

Implications Of Community-Based Management Of Marine Reserves In The Philippines For Reef Fish Communities And Biodiversity, Sara E. Marriott, Courtney Cox, Rizaller C. Amolo, Dean Apistar, Roquelito H. Mancao, Kim De Mutsert

Faculty Publications

Overfishing and destructive fishing practices are major threats to marine biodiversity in the Philippines, where over 1.9 million small-scale fishers are supported by these biodiverse marine communities. Nearly 50% of all marine fish capture in the Philippines is from artisanal fisheries, with much of it not reported or under-reported. Marine reserves, where fishing is prohibited have been created in many local government units to help restore and preserve this biodiversity. The success of these marine reserves is still under serious debate with effective management still representing a significant challenge. The lack of a governance system to centrally managed marine reserves …

Rebecca Fillyaw Ms Thesis Data For Publication In The Journal Sustainability, Rebecca Fillyaw, Melinda Donnelly, Linda Walters

CEELAB Research Data

By combatting erosion and increasing habitat, mangrove living shorelines are an effective alternative to hard-armoring in tropical and subtropical areas. An experimental red mangrove living shoreline was deployed within Mosquito Lagoon, Florida, using a factorial design to test the impact of mangrove age, breakwater presence, and mangrove placement on mangrove survival within the first year of deployment. Mixed mangrove age treatments were included to identify if seedling (11-month-old) survival could be enhanced by the presence of transitional (23-month-old) and adult (35 to 47-month-old) mangroves. Environmental factors were monitored to detect possible causes of mangrove mortalities. Approximately half (50.6%) of mangroves …

Complete Mitochondrial Genomes Of Two Species Of Stichopathes Brook, 1889 (Hexacorallia: Antipatharia: Antipathidae) From Rapa Nui (Easter Island), Cynthia M. Asorey, Javier Sellanes, Daniel Wagner, Erin E. Easton

School of Earth, Environmental, & Marine Sciences Faculty Publications

We report the complete mitochondrial genomes of two antipatharian species, Stichopathes sp. SCBUCN-8849 and Stichopathes sp. SCBUCN-8850, collected between 120 and 180 m depth off Rapa Nui (∼ −27.1°, −109.4°). The size of the two mitogenomes are 20,389 bp (29.0% A, 15.2% C, 19.9% G, and 35.9% T) and 20,463 bp (29.0% A, 15.3% C, 19.9% G, and 35.8% T), respectively. Both mitogenomes have the classic Hexacorallia gene content of 13 protein-coding, two rRNA, and two tRNA genes plus a COX1 intron with embedded HEG as found in the Antipathidae and other antipatharian families.

Land-Use Dynamics Associated With Mangrove Deforestation For Aquaculture And The Subsequent Abandonment Of Ponds, Aslan Aslan, Abdullah F. Rahman, Scott M. Robeson, Muhammad Ilman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Highlights

• SAR data is useful for tracking dynamic changes in mangrove ecosystem.

• Time series SAR data can be used to estimate lifespan of pond.

• During 22+ years, over half of the mangrove forest in Mahakam Delta has been converted to aquaculture.

Abstract

The objective of this study was to evaluate the spatiotemporal dynamics of large area mangrove deforestation, aquaculture pond building, and the subsequent abandonment of ponds in a large delta in Indonesia, namely the Mahakam Delta. So, we developed and applied a novel methodology for exploring the lifespan of aquaculture ponds. Using historical multispectral and radar data, the …

Climate Process Team: Improvement Of Ocean Component Of Noaa Climate Forecast System Relevant To Madden-Julian Oscillation Simulations, Toshiaki Shinoda, Suyang Pei, Wanqiu Wang, Joshua X. Fu, Ren-Chieh Lien, Hyodae Seo, Alexander Soloviev

Marine & Environmental Sciences Faculty Articles

Given the increasing attention in forecasting weather and climate on the subseasonal time scale in recent years, National Oceanic and Atmospheric Administration (NOAA) announced to support Climate Process Teams (CPTs) which aim to improve the Madden-Julian Oscillation (MJO) prediction by NOAA’s global forecasting models. Our team supported by this CPT program focuses primarily on the improvement of upper ocean mixing parameterization and air-sea fluxes in the NOAA Climate Forecast System (CFS). Major improvement includes the increase of the vertical resolution in the upper ocean and the implementation of General Ocean Turbulence Model (GOTM) in CFS. In addition to existing mixing …

Squid And Cuttlefish Resources Of Western Australia, Daniel Yeoh, Danielle Johnston, David C. Harris

Fisheries Research Reports

This report provides a description and assessment of the squid and cuttlefish resources of Western Australia, and all of the fishing activities (i.e. fisheries / fishing sectors) affecting these resources. Encompassed are multiple species in the orders Oegopsida and Myopsida (squid or ‘calamari’) and Sepiida (cuttlefish), including; southern calamari (Sepioteuthis australis), northern calamari (Sepioteuthis lessoniana), Gould’s squid (Nototodarus gouldi), loligo squids Uroteuthis (Photololigo) spp.,giant cuttlefish (Sepia apama), broadclub cuttlefish (Sepia latimanus) and pharaoh cuttlefish (Sepia pharaonis).

Fisheries Science Update – October 2021: West Coast Demersal Scalefish Resource, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

Key points: 2021 stock assessment outcomes • The West Coast Demersal Scalefish Resource (WCDSR) is halfway into a 20-year recovery plan following a period of overfishing in the 1990s and 2000s. • This latest assessment provides an important “health check” on the recovery status. • The recovery plan is based on maintaining recreational (including charter) and commercial sector’s total fishing mortality below catch limits and protecting key spawning aggregations to recover the WCDSR by 2030. • The Department of Primary Industries and Regional Development (DPIRD) tracks recovery progress by undertaking weight of evidence stock assessments of WCDSR indicator species dhufish …

Sperm Repository For A Breeding Program Of The Eastern Oyster Crassostrea Virginica: Sample Collection, Processing, Cryopreservation, And Data Management Plan, Huiping Yang, Yuanzi Huo, Jayme C. Yee, Scott Rikard, William C. Walton, Eric A. Saillant

Faculty Publications

The Eastern oyster Crassostrea virginica (Family Ostreidae) is one of the most important fishery and aquaculture species in the U.S. and is a keystone species for coastal reefs. A breeding program was initiated in 2019 to support the fast-growing aquaculture industry culturing this species in the Gulf of Mexico. Oysters from 17 wild populations in embayment along the U.S. Gulf of Mexico coast from southwest Florida to the Matagorda Bay, Texas were used as broodstock for the program to maximize genetic diversity in the base population. A sperm repository of the broodstock was established to support the breeding project. The …

Sensitivity Of Aquatic Organic Matter Degradation To Changing Temperature And Nutrient Conditions In A Coastal Watershed, Curtis John Szewczyk

Theses and Dissertations

The degradation of organic matter (OM) within inland waters plays a pivotal role in the global carbon cycle and quantifying carbon budgets. Here, measurements of dissolved oxygen (DO) decay rates were used to infer the extent and kinetics of OM degradation under variable conditions. The goal of the investigation was to quantify how OM samples within the Waccamaw River watershed, South Carolina, respond to changes in temperature and nutrient availability as a function of their source location and lability. Samples were collected from urbanized stormwater detention ponds and undeveloped upland forested wetland drainages to provide contrasting and distinct OM sources …

The Influence Of Bottom Type And Water Column Stratification On Reef Fish Community Structure At Gray’S Reef National Marine Sanctuary, Bridget Campbell

Honors Theses

Understanding the physical and oceanographic differences across reef habitats can help researchers assess how those differences influence fish distribution and community structure, which leads to a better understanding of what a healthy reef system looks like. The traditional methods used to assess fish communities on temperate reefs are limited and often focus solely on either the reef structure or water column conditions alone. An assessment of both data sets yields a more complete understanding of the ecosystem as a whole. In this study, Gray’s Reef National Marine Sanctuary (GRNMS) was surveyed both inside and outside a Marine Protected Area (MPA) …

Integrated Analyses Of Snp-Genotype And Environmental Data In A Continuously Distributed Snapper Species (Lutjanus Johnii, Bloch, 1792) Reveals A Mosaic Of Populations And A Challenge For Sustainable Management, Laura Taillebois, Danielle Davenport, Diane P. Barton, David Alexander Cook, Thor Saunders, Mark Hearnden, Richard J. Saunders, Stephen J. Newman, Michael J. Travers

Fisheries Research Articles

Understanding population structure is important for predicting the outcomes of anthropogenic development, harvest, and environmental change on the abundance of fisheries species. Logically, the use of several data sources is best for delineating population structure, but combining across data types adds extra challenges as results can be incongruent. Here, genetic and environmental markers were used to test hypotheses about population structure in a collection of 523 tropical inshore finfish (Lutjanus johnii) across northern Australia from 20 locations. Redundancy analyses (RDA) were used to statistically test for correlations among data sources providing a basis for reconciliation and insights into ecological and …

Assessing Changes In Clusters Of Wildlife Road Mortalities After The Construction Of Wildlife Mitigation Structures, Thomas J. Yamashita, Trinity D. Livingston, Kevin W. Ryer, John H. Young Jr., Richard Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

Collisions with vehicles can be a major threat to wildlife populations, so wildlife mitigation structures, including exclusionary fencing and wildlife crossings, are often constructed. To assess mitigation structure effectiveness, it is useful to compare wildlife road mortalities (WRMs) before, during, and after mitigation structure construction; however, differences in survey methodologies may make comparisons of counts impractical. Location-based cluster analyses provide a means to assess how WRM spatial patterns have changed over time. We collected WRM data between 2015 and 2019 on State Highway 100 in Texas, USA. Five wildlife crossings and exclusionary fencing were installed in this area between September …