Biotechnology Commons^™

A Neurological Foundation For Freedom, Nita A. Farahany

Faculty Scholarship

No abstract provided.

Protein Trap Lines Of Drosophila To Demonstrate Spatio-Temporal Localization Of Proteins In An Undergraduate Lab, Oorvashi Roy Puli, Amit Singh

Biology Faculty Publications

The objective of this teaching note is to generate a laboratory exercise, which allows students to get a hands-on experience of a cell biology technique. The short duration of the laboratory classes is the biggest challenge with the development of a cell biology lab for an undergraduate curriculum. Therefore, it is necessary to design a laboratory exercise that enables the students to carry out cell biological assays in the desired time. This laboratory exercise focuses on tracking protein expression levels along a spatial (space) and temporal (time) axis in developing Drosophila melanogaster organ primordium. Here we use the protein trap …

Quantitative Comparison Of Cis-Regulatory Element (Cre) Activities In Transgenic Drosophila Melanogaster, William A. Rogers, Thomas M. Williams

Biology Faculty Publications

Gene expression patterns are specified by cis-regulatory element (CRE) sequences, which are also called enhancers or cis-regulatory modules. A typical CRE possesses an arrangement of binding sites for several transcription factor proteins that confer a regulatory logic specifying when, where, and at what level the regulated gene(s) is expressed. The full set of CREs within an animal genome encodes the organism′s program for development¹, and empirical as well as theoretical studies indicate that mutations in CREs played a prominent role in morphological evolution^2-4. Moreover, human genome wide association studies indicate that genetic variation in CREs …

Recycling Mimeograph-Printed Newsprint Paper, Mari E. L, Torres A.S, Austria C.O

ASEAN Journal on Science and Technology for Development

Virgin newsprint paper from thermo-mechanical pulp was subjected to a laboratory recycling scheme, which involved mimeograph-printing, re-pulping, de-inking, washing, refining, and handsheetforming, without adding other fibre in between cycles. Fibre dimension, pulp freeness and paper properties were determined after each cycle until the fifth, at which about 20% of the original material remained. The remaining fibre was then mixed with virgin pulp, the original newsprint and unsorted mixed office waste to determine the proportion necessary for acceptable properties. The results indicated remarkable modification in distribution of fibre properties, a decreasing amount of long fibre with corresponding increase of short fibre …

Physical And Mechanical Properties Of Jute Mat Reinforced Epoxy Composites, Sadaf S.M, Siddik M, Ahsan Q

ASEAN Journal on Science and Technology for Development

Cellulose jute fibre offers a number of benefits as reinforcement for synthetic polymers since it has a high specific strength and stiffness, low hardness, relatively low density and biodegradability. To reduce moisture uptake and hence to improve the mechanical properties of the composites, bleached jute mats were incorporated as reinforcing elements in the epoxy matrix. Composites at varying volume fractions and different orientations of jute mat were fabricated by hot compression machine under specific pressures and temperatures. Tensile, flexure, impact and water absorption tests of composites were conducted. Jute mat oriented at (0 ± 45–90)° composites showed reduced strength compared …

Nutrient Composition Of Artocarpus Champeden And Its Hybrid (Nanchem) In Negara Brunei Darussalam, Lim L.B.L, Chieng H.I, Wimmer F.L

ASEAN Journal on Science and Technology for Development

The flesh and seeds of ripened and unripened Artocarpus champeden and its ripened hybrid (Nanchem) were analyzed for their moisture, ash, crude fibre, crude protein, crude fat, total carbohydrate, energy and mineral content. Generally, unripened A. champeden which is always treated and cooked as a vegetable contains higher amounts of moisture, ash, crude fibre and crude protein for its flesh than ripened A. champeden and Nanchem. Ripened A. champeden and Nanchemhave higher total carbohydrates and energy content than the unripe fruit. Similarly, the unripened A. champeden seed has more nutritional components in terms of moisture, ash, crude fibre, crude protein, …

Field And Laboratory-Based Approach For The Determination Of Friction Angle Of Geological Discontinuities Of Malaysian Granites, Ghani R. A, Goh T. L, Hariri A. M, Baizura Y. N

ASEAN Journal on Science and Technology for Development

The basic friction angle, Φb for artificially sawn discontinuity planes for fresh granite, as determined by tilt testing, has an average value of 30º. For the natural rough discontinuity surfaces, a wide range of values have been determined for the peak friction angle, Φpeak ranging from 47º to a maximum value of 80º, depending on the joint roughness coefficient (JRC). The average values of the friction angles for the different degrees of roughness were as follows: JRC 2–4 = 58°; JRC 6–8 = 60°; JRC 8–10 = 47°; JRC 12–14 = 60°; JRC 14–16 = 71° ; JRC 18–20 = …

Usage Of Uasb Reactor To Assess Feasibility Of Treatment Of Paper Mill Effluent, Arshad A, Hashim N.H, Ghazala N

ASEAN Journal on Science and Technology for Development

Upflow anaerobic sludge blanket (UASB) reactors R-I and R-II, each with an effective volume of 6.0 l were used to study the treatability of actual effluent obtained from paper mills at a mesophilic temperature and neutral pH. Methanol, as a source of an easily biodegradable substance along with activated carbon of effective size 1.5 mm–2.5 mm were added to the reactor R-I to a total depth of 12 cm to evaluate its efficiency. The pH of both the reactors were kept constant at neutral by adding an external buffer solution of 0.03 M NaHCO3 with the feed solution. It was …

Assessment Of The Treatment Of Textile Mill Effluent Using Uasb Reactor, Arshad A, Hashim N.H, Kashif A.K, Bashir A

ASEAN Journal on Science and Technology for Development

This study was designed to evaluate the feasibility of the treatment of actual textile mill effluent using a upflow anaerobic sludge blanket (UASB) reactor. The main objective of this study was to generate design aids; in terms of organic loading rate (OLR), hydraulic retention time (HRT) versus chemical oxygen demand (COD) and colour removal in the textile effluent using a UASB reactor at neutral pH and constant mesophilic temperature. The COD, colour and total suspended solids concentration of the textile wastes used in the study were analyzed as 5440 mg/l, 3280 mg/l, 2320 units and 955 mg/l, respectively. The UASB …

Programmers And Forensic Analyses: Accusers Under The Confrontation Clause, Karen Neville

Duke Law & Technology Review

Recent Supreme Court cases involving the Confrontation Clause have strengthened defendants’ right to face their accusers. Bullcoming v. New Mexico explored the question of whether the testimony of the technician who performs a forensic analysis may be substituted by that of another analyst, and the Court held that producing a surrogate witness who was not sufficiently involved in the analysis violates the confrontation right.

The presumption of infallible technology is fading, and courts may soon realize programmers have greater influence over the ultimate outcome of forensic tests than do the technicians who rely on such analytical tools. The confrontation right, …

Boron Stress Activates The General Amino Acid Control Mechanism And Inhibits Protein Synthesis, Irem Uluisik, Alaattin Kaya, Dmitri E. Fomenko, Huseyin C. Karakaya, Bradley A. Carlson, Vadim N. Gladyshev, Ahmet Koc

Department of Biochemistry: Faculty Publications

Boron is an essential micronutrient for plants, and it is beneficial for animals. However, at high concentrations boron is toxic to cells although the mechanism of this toxicity is not known. Atr1 has recently been identified as a boron efflux pump whose expression is upregulated in response to boron treatment. Here, we found that the expression of ATR1 is associated with expression of genes involved in amino acid biosynthesis. These mechanisms are strictly controlled by the transcription factor Gcn4 in response to boron treatment. Further analyses have shown that boron impaired protein synthesis by promoting phosphorylation of eIF2α in a …

Laboratory Diagnosis Of Clostridium Difficile Infection: Can Molecular Amplification Methods Move Us Out Of Uncertainty?, Fred C. Tenover, Ellen Jo Baron, Lance R. Peterson, David Persing

Biology Faculty Publications

The laboratory diagnosis of Clostridium difficile infection (CDI) continues to be challenging. Recent guidelines from professional societies in the United States note that enzyme immunoassays for toxins A and B do not have adequate sensitivity to be used alone for detecting CDI, yet the optimal method for diagnosing this infection remains unclear. Nucleic acid amplification tests (NAATs) that target chromosomal toxin genes (usually the toxin B gene, tcdB) show high sensitivity and specificity, provide rapid results, and are amenable to both batch and on-demand testing, but these tests were not universally recommended for routine use in the recent guidelines. …

Iron Insufficiency Compromises Motor Neurons And Their Mitochondrial Function In Irp2-Null Mice, Suh Young Jeong, Daniel R. Crooks, Hayden Wilson-Ollivierre, Manik C. Ghosh, Rachid Sougrat, Jaekwon Lee, Sharon Cooperman, James B. Mitchell, Carole Beaumont, Tracey A. Rouault

Department of Biochemistry: Faculty Publications

Genetic ablation of Iron Regulatory Protein 2 (Irp2, Ireb2), which post-transcriptionally regulates iron metabolism genes, causes a gait disorder in mice that progresses to hind-limb paralysis. Here we have demonstrated that misregulation of iron metabolism from loss of Irp2 causes lower motor neuronal degeneration with significant spinal cord axonopathy. Mitochondria in the lumbar spinal cord showed significantly decreased Complex I and II activities, and abnormal morphology. Lower motor neurons appeared to be the most adversely affected neurons, and we show that functional iron starvation due to misregulation of iron import and storage proteins, including transferrin receptor 1 …

Identification And Characterization Of A Novel Thermohalophilic Esterase From The Red Sea: Atlantis Ii Brine Pool, Yasmine Mustafa Mohamed

Theses and Dissertations

Industrial (white) biotechnology poses an increasing demand for novel biocatalysts that are robust under a wide range of conditions. Traditionally, biocatalysts were isolated from cultured isolates, however, less than 1% of microorganisms are culturable. Therefore, it became evident that the unculturable majority holds a great potential for the discovery of novel biocatalysts. Metagenomics is an invaluable tool for accessing the genomes of the uncultured majority and has led to the isolation of a large number of biocatalysts from various environments. Extreme environments such as hydrothermal vents, brine pools and glaciers, are an attractive source for biocatalysts. Biocatalysts from these environments …

Library Impact Statement For Mls 496 Global Health, Michael Cerbo

Library Impact Statements

Library Impact Statement in response to new course proposal for MLS 496 Global Health. New course was supported with no need for additional resources.

Library Impact Statement For Mls 575 Business Of Biotechnology, Michael Cerbo

Library Impact Statements

Library Impact Statement in response to new course proposal for MLS 575 Business of Biotechnology. New course was supported with no need for additional resources.

Library Impact Statement For Mls 572 Vaccines And Biologics, Michael Cerbo

Library Impact Statements

Library Impact Statement in response to new course proposal for MLS 572 Vaccines and Biologics. New course was supported with no need for additional resources.

Library Impact Statement For Mls 573 Molecular Biology Methods, Michael Cerbo

Library Impact Statements

Library Impact Statement in response to new course proposal for MLS 573 Molecular Biology Methods. New course was supported with no need for additional resources.

Activation Of Jnk Signaling Mediates Amyloid-Ss- Dependent Cell Death, Meghana Tare, Rohan Modi, Jaison Nainaparampil, Oorvashi Roy Puli, Shimpi Bedi, Pedro Fernandez-Funez, Madhuri Kango-Singh, Amit Singh

Biology Faculty Publications

Background: Alzheimer's disease (AD) is an age related progressive neurodegenerative disorder. One of the reasons for Alzheimer's neuropathology is the generation of large aggregates of Aß42 that are toxic in nature and induce oxidative stress, aberrant signaling and many other cellular alterations that trigger neuronal cell death. However, the exact mechanisms leading to cell death are not clearly understood.

Methodology/Principal Findings: We employed a Drosophila eye model of AD to study how Aß42 causes cell death. Misexpression of higher levels of Aß42 in the differentiating photoreceptors of fly retina rapidly induced aberrant cellular phenotypes and cell death. We found that …

Propagation System Manual, Margaret Kane

Hydroponic Center

Contained in this manual you will find the required materials, assembly instructions, operation procedures and safety protocols to construct, run and maintain a hydroponic propagation system.

The Propagation System is designed to provide an environment for seeds to germinate with optimal conditions for seedling growth. The purpose of the Propagator is to create an environment that is suitable for seedlings to develop a strong root system and uprooted stem so they can be transplanted into a new system where they are able to fully develop and be harvested. This procedure introduces plants, vegetables, and fruits to a new system of …