Biotechnology Commons^™

Marie Tharp At Her Drafting Table, Courtesy Of The Lamont-Doherty Earth Observatory, Earth Institute, Columbia University, Allison Marsh

Section 4: Imaging the Concealed

No abstract provided.

Conclusion Panel, Allison Marsh

Section 6: Conclusion

No abstract provided.

Design, Synthesis, And Anticancer Activity Of Ruthenium Complexes, Brock S. Howerton

Theses and Dissertations--Chemistry

Ruthenium complexes show promise as light activated photodynamic therapy (PDT) prodrugs. Strained octahedral complexes were synthesized that produce a cytotoxic species upon light activation. pUC19 DNA damage in vitro experiments were carried out to determine the type of damage observed. In vivo cell experiments were carried out on the non-small lung cancer A549 cell line to determine the phototherapeutic window of the synthesized complexes. One mechanism of drug resistance via elevated levels of glutathione was addressed through in vitro binding studies carried out with UV-Vis spectroscopy and in vivo glutathione titrations in the A549 cell line. Several complexes were shown …

Complete Genome Sequence Of Clostridium Clariflavum Dsm 19732, Javier A. Izquierdo, Lynne Goodwin, Karen W. Davenport, Hazuki Teshima

Dartmouth Scholarship

Clostridium clariflavum is a Cluster III Clostridium within the family Clostridiaceae isolated from thermophilic anaerobic sludge (Shiratori et al, 2009). This species is of interest because of its similarity to the model cellulolytic organism Clostridium thermocellum and for the ability of environmental isolates to break down cellulose and hemicellulose. Here we describe features of the 4,897,678 bp long genome and its annotation, consisting of 4,131 protein-coding and 98 RNA genes, for the type strain DSM 19732.

Microfluidic Impedance Spectroscopy As A Tool For Quantitative Biology And Biotechnology, Ahmet C. Sabuncu, Jie Zhuang, Juergen F. Kolb, Ali Beskok

Mechanical & Aerospace Engineering Faculty Publications

A microfluidic device that is able to perform dielectric spectroscopy is developed. The device consists of a measurement chamber that is 250 μm thick and 750 μm radius. Around 1000 cells fit inside the chamber assuming average quantities for cell radius and volume fraction. This number is about 1000 folds lower than the capacity of conventional fixtures. A T-cell leukemia cell line Jurkat is tested using the microfluidic device. Measurements of deionized water and salt solutions are utilized to determine parasitic effects and geometric capacitance of the device. Physical models, including Maxwell-Wagner mixture and double shell models, are used to …

Expression Of Lipase From Mycobacterium Tuberculosis In Nicotiana Tobacum And Lactuca Sativa Chloroplasts, Bethany Lloyd

Electronic Theses and Dissertations

Tuberculosis (TB), caused by the bacterium Mycobacterium tuberculosis (M. tuberculosis), is a global threat and the leading cause of death among individuals infected with HIV. TB treatment requires multi-drug cocktails, due to the increasing rates of drug resistance of the bacterium. With multi-drug cocktails, strains have been documented to be resistant to all major drugs in the fight against TB. Since the strains are drug resistant, it calls for an increasing need for vaccine and treatment development for the purpose of preventing and managing the disease. The most widely distributed vaccine against TB is Bacillus Calmette-Gue´rin (BCG). Apart from being …

Quantitative Reagent-Free Detection Of Fibrinogen Levels In Human Blood Plasma Using Raman Spectroscopy, Kelvin Poon, Fiona Lyng, Peter Knief, Orla L. Howe, Aidan Meade, James Curtin, Hugh Byrne, Joseph Vaughan

Articles

Fibrinogen assays are commonly used as part of clinical screening tests to investigate haemorrhagic states, for detection of disseminated intravascular coagulation and as a predictor of a variety of cardiovascular events. The Clauss assay, which measures thrombin clotting time, is the most commonly used method for measuring fibrinogen levels. Nevertheless, inconsistencies are present in inter-manufacturer reagent sources, calibration standards and methodologies. Automated coagulation analysers, which measure changes in optical density during the prothrombin time (PT-Fg), have found use in many hospitals. However, the PT-Fg method is found to give falsely elevated values due to varying choices of calibrants, reagents and …

A Neurological Foundation For Freedom, Nita A. Farahany

Faculty Scholarship

No abstract provided.

Frankenfoods: Are We Bioengineering Our Children And What Can Curriculum Do?, Patra Rickman

College of Graduate Studies: Theses & Dissertations

In this dissertation I explore the effect of biotechnology and food production on children’s physical and mental health. What we eat affects our well-being and unknowingly, we have little control of what exactly we are consuming. Children have even less control and feel the effects of additives and chemicals more than adults. Many of the effects of bioengineered foods are unknown at this time. My dissertation will be a theoretical exploration of biotechnology in food using a bioethical critical perspective. I use my personal experience and research to examine the effects of processed and genetically engineered foods on people, especially …

Protein Trap Lines Of Drosophila To Demonstrate Spatio-Temporal Localization Of Proteins In An Undergraduate Lab, Oorvashi Roy Puli, Amit Singh

Biology Faculty Publications

The objective of this teaching note is to generate a laboratory exercise, which allows students to get a hands-on experience of a cell biology technique. The short duration of the laboratory classes is the biggest challenge with the development of a cell biology lab for an undergraduate curriculum. Therefore, it is necessary to design a laboratory exercise that enables the students to carry out cell biological assays in the desired time. This laboratory exercise focuses on tracking protein expression levels along a spatial (space) and temporal (time) axis in developing Drosophila melanogaster organ primordium. Here we use the protein trap …

Quantitative Comparison Of Cis-Regulatory Element (Cre) Activities In Transgenic Drosophila Melanogaster, William A. Rogers, Thomas M. Williams

Biology Faculty Publications

Gene expression patterns are specified by cis-regulatory element (CRE) sequences, which are also called enhancers or cis-regulatory modules. A typical CRE possesses an arrangement of binding sites for several transcription factor proteins that confer a regulatory logic specifying when, where, and at what level the regulated gene(s) is expressed. The full set of CREs within an animal genome encodes the organism′s program for development¹, and empirical as well as theoretical studies indicate that mutations in CREs played a prominent role in morphological evolution^2-4. Moreover, human genome wide association studies indicate that genetic variation in CREs …

Recycling Mimeograph-Printed Newsprint Paper, Mari E. L, Torres A.S, Austria C.O

ASEAN Journal on Science and Technology for Development

Virgin newsprint paper from thermo-mechanical pulp was subjected to a laboratory recycling scheme, which involved mimeograph-printing, re-pulping, de-inking, washing, refining, and handsheetforming, without adding other fibre in between cycles. Fibre dimension, pulp freeness and paper properties were determined after each cycle until the fifth, at which about 20% of the original material remained. The remaining fibre was then mixed with virgin pulp, the original newsprint and unsorted mixed office waste to determine the proportion necessary for acceptable properties. The results indicated remarkable modification in distribution of fibre properties, a decreasing amount of long fibre with corresponding increase of short fibre …

Physical And Mechanical Properties Of Jute Mat Reinforced Epoxy Composites, Sadaf S.M, Siddik M, Ahsan Q

ASEAN Journal on Science and Technology for Development

Cellulose jute fibre offers a number of benefits as reinforcement for synthetic polymers since it has a high specific strength and stiffness, low hardness, relatively low density and biodegradability. To reduce moisture uptake and hence to improve the mechanical properties of the composites, bleached jute mats were incorporated as reinforcing elements in the epoxy matrix. Composites at varying volume fractions and different orientations of jute mat were fabricated by hot compression machine under specific pressures and temperatures. Tensile, flexure, impact and water absorption tests of composites were conducted. Jute mat oriented at (0 ± 45–90)° composites showed reduced strength compared …

Nutrient Composition Of Artocarpus Champeden And Its Hybrid (Nanchem) In Negara Brunei Darussalam, Lim L.B.L, Chieng H.I, Wimmer F.L

ASEAN Journal on Science and Technology for Development

The flesh and seeds of ripened and unripened Artocarpus champeden and its ripened hybrid (Nanchem) were analyzed for their moisture, ash, crude fibre, crude protein, crude fat, total carbohydrate, energy and mineral content. Generally, unripened A. champeden which is always treated and cooked as a vegetable contains higher amounts of moisture, ash, crude fibre and crude protein for its flesh than ripened A. champeden and Nanchem. Ripened A. champeden and Nanchemhave higher total carbohydrates and energy content than the unripe fruit. Similarly, the unripened A. champeden seed has more nutritional components in terms of moisture, ash, crude fibre, crude protein, …

Usage Of Uasb Reactor To Assess Feasibility Of Treatment Of Paper Mill Effluent, Arshad A, Hashim N.H, Ghazala N

ASEAN Journal on Science and Technology for Development

Upflow anaerobic sludge blanket (UASB) reactors R-I and R-II, each with an effective volume of 6.0 l were used to study the treatability of actual effluent obtained from paper mills at a mesophilic temperature and neutral pH. Methanol, as a source of an easily biodegradable substance along with activated carbon of effective size 1.5 mm–2.5 mm were added to the reactor R-I to a total depth of 12 cm to evaluate its efficiency. The pH of both the reactors were kept constant at neutral by adding an external buffer solution of 0.03 M NaHCO3 with the feed solution. It was …

Field And Laboratory-Based Approach For The Determination Of Friction Angle Of Geological Discontinuities Of Malaysian Granites, Ghani R. A, Goh T. L, Hariri A. M, Baizura Y. N

ASEAN Journal on Science and Technology for Development

The basic friction angle, Φb for artificially sawn discontinuity planes for fresh granite, as determined by tilt testing, has an average value of 30º. For the natural rough discontinuity surfaces, a wide range of values have been determined for the peak friction angle, Φpeak ranging from 47º to a maximum value of 80º, depending on the joint roughness coefficient (JRC). The average values of the friction angles for the different degrees of roughness were as follows: JRC 2–4 = 58°; JRC 6–8 = 60°; JRC 8–10 = 47°; JRC 12–14 = 60°; JRC 14–16 = 71° ; JRC 18–20 = …

Assessment Of The Treatment Of Textile Mill Effluent Using Uasb Reactor, Arshad A, Hashim N.H, Kashif A.K, Bashir A

ASEAN Journal on Science and Technology for Development

This study was designed to evaluate the feasibility of the treatment of actual textile mill effluent using a upflow anaerobic sludge blanket (UASB) reactor. The main objective of this study was to generate design aids; in terms of organic loading rate (OLR), hydraulic retention time (HRT) versus chemical oxygen demand (COD) and colour removal in the textile effluent using a UASB reactor at neutral pH and constant mesophilic temperature. The COD, colour and total suspended solids concentration of the textile wastes used in the study were analyzed as 5440 mg/l, 3280 mg/l, 2320 units and 955 mg/l, respectively. The UASB …

Programmers And Forensic Analyses: Accusers Under The Confrontation Clause, Karen Neville

Duke Law & Technology Review

Recent Supreme Court cases involving the Confrontation Clause have strengthened defendants’ right to face their accusers. Bullcoming v. New Mexico explored the question of whether the testimony of the technician who performs a forensic analysis may be substituted by that of another analyst, and the Court held that producing a surrogate witness who was not sufficiently involved in the analysis violates the confrontation right.

The presumption of infallible technology is fading, and courts may soon realize programmers have greater influence over the ultimate outcome of forensic tests than do the technicians who rely on such analytical tools. The confrontation right, …

Boron Stress Activates The General Amino Acid Control Mechanism And Inhibits Protein Synthesis, Irem Uluisik, Alaattin Kaya, Dmitri E. Fomenko, Huseyin C. Karakaya, Bradley A. Carlson, Vadim N. Gladyshev, Ahmet Koc

Department of Biochemistry: Faculty Publications

Boron is an essential micronutrient for plants, and it is beneficial for animals. However, at high concentrations boron is toxic to cells although the mechanism of this toxicity is not known. Atr1 has recently been identified as a boron efflux pump whose expression is upregulated in response to boron treatment. Here, we found that the expression of ATR1 is associated with expression of genes involved in amino acid biosynthesis. These mechanisms are strictly controlled by the transcription factor Gcn4 in response to boron treatment. Further analyses have shown that boron impaired protein synthesis by promoting phosphorylation of eIF2α in a …

Laboratory Diagnosis Of Clostridium Difficile Infection: Can Molecular Amplification Methods Move Us Out Of Uncertainty?, Fred C. Tenover, Ellen Jo Baron, Lance R. Peterson, David Persing

Biology Faculty Publications

The laboratory diagnosis of Clostridium difficile infection (CDI) continues to be challenging. Recent guidelines from professional societies in the United States note that enzyme immunoassays for toxins A and B do not have adequate sensitivity to be used alone for detecting CDI, yet the optimal method for diagnosing this infection remains unclear. Nucleic acid amplification tests (NAATs) that target chromosomal toxin genes (usually the toxin B gene, tcdB) show high sensitivity and specificity, provide rapid results, and are amenable to both batch and on-demand testing, but these tests were not universally recommended for routine use in the recent guidelines. …