Marine Biology Commons^™

Du Undergraduate Showcase: Research, Scholarship, And Creative Works, Caitlyn Aldersea, Justin Bravo, Sam Allen, Anna Block, Connor Block, Emma Buechler, Maria De Los Angeles Bustillos, Arianna Carlson, William Christensen, Olivia Kachulis, Noah Craver, Kate Dillon, Muskan Fatima, Angel Fernandes, Emma Finch, Colleen Cassidy, Amy Fishman, Andrea Francis, Stacia Fritz, Simran Gill, Emma Gries, Rylie Hansen, Shannon Powers, Jacqueline Martinez, Zachary Harker, Ashley Hasty, Mykaela Tanino-Springsteen, Kathleen Hopps, Adelaide Kerenick, Colin Kleckner, Ci Koehring, Elijah Kruger, Braden Krumholz, Maddie Leake, Lyneé Alves, Seraphina Loukas, Yatzari Lozano Vazquez, Haley Maki, Emily Martinez, Sierra Mckinney, Mykaela Tanino-Springsteen, Audrey Mitchell, Kipling Newman, Audrey Ng, Megan Lucyshyn, Andrew Nguyen, Stevie Ostman, Casandra Pearson, Alexandra Penney, Julia Gielczynski, Tyler Ball, Anna Rini, Christina Rorres, Simon Ruland, Helayna Schafer, Emma Sellers, Sarah Schuller, Claire Shaver, Kevin Summers, Isabella Shaw, Madison Sinar, Claudia Pena, Apshara Siwakoti, Carter Sorensen, Madi Sousa, Anna Sparling, Alexandra Revier, Brandon Thierry, Dylan Tyree, Maggie Williams, Lauren Wols

DU Undergraduate Research Journal Archive

DU Undergraduate Showcase: Research, Scholarship, and Creative Works

Ecomorphology Of A Predatory Deep-Sea Fish Family: Does Trophic Specialization Drive Hyperspeciation?, Ryan P. Mcgonagle, David Kerstetter, Danté Fenolio, Tracey Sutton

Marine & Environmental Sciences Faculty Articles

Two of the main drivers of speciation among aquatic vertebrates are physical isolation (e.g., lakes and streams) and micro-niche availability (e.g., tropical reefs). In both regards, the mesopelagic domain of the open ocean, Earth’s second largest cumulative ecosystem (behind only the bathypelagic domain), would seem retardant. Ocean circulation makes isolation rare on both contemporary and geological time/space scales, and the lack of substrate precludes stable micro-niches. Paradoxically, some pelagic taxa demonstrate much higher-than-expected species richness on regional scales. A prime example is the dragonfish family Stomiidae, the most speciose family of mesopelagic fishes, owing largely to the subfamily Melanostomiinae (scaleless …

Rapidly Changing Range Limits In A Warming World: Critical Data Limitations And Knowledge Gaps For Advancing Understanding Of Mangrove Range Dynamics In The Southeastern Usa, Rémi Bardou, Michael J. Osland, Steven Scyphers, Christine Shepard, Karen E. Aerni, Jahson B. Alemu I, Robert Crimian, Richard H. Day, Nicholas M. Enwright, Christopher A. Gabler

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Climate change is altering species’ range limits and transforming ecosystems. For example, warming temperatures are leading to the range expansion of tropical, cold-sensitive species at the expense of their cold-tolerant counterparts. In some temperate and subtropical coastal wetlands, warming winters are enabling mangrove forest encroachment into salt marsh, which is a major regime shift that has significant ecological and societal ramifications. Here, we synthesized existing data and expert knowledge to assess the distribution of mangroves near rapidly changing range limits in the southeastern USA. We used expert elicitation to identify data limitations and highlight knowledge gaps for advancing understanding of …

Meiofauna Distribution Patterns On A Sandy Beach Of Sapelo Island, Georgia, Nancy Dalman, Dianna Spence, Richard Settele, David Turner, Andrew Shirley, Jill Schulze

Georgia Journal of Science

Substantial abundance and diversity of intertidal invertebrates known as meiofauna are evident on a sandy beach of Sapelo Island, Georgia. Meiofauna are small, benthic, nearly ubiquitous animals. They consume microbes and detritus and are a food source for juvenile fish and ghost shrimp. Meiofauna were manually separated from sand samples collected from three intertidal zones and two depths during low tide in January, March, June, and October, 2017. Fifteen major meiofaunal clades were identified in June, while only eight were observed in January; in all, there were sixteen clades observed. Highest meiofauna densities were found in the middle intertidal zone …

Optimizing Strategies To Hydraulically Plant Atlantic Salmon Eggs Based On Fry Dispersal Patterns, Ernest J. Atkinson

Electronic Theses and Dissertations

The Gulf of Maine Distinct Population Segment of Atlantic Salmon has suffered from habitat loss and exploitation over the last century. Hatchery supplementation has prevented the extirpation of the species, but stocking methods represent tradeoffs between survival, domestication, and logistics. Egg planting, the use of eyed embryos, maximizes natural rearing opportunities which can be important for adaptation. This method, however, is logistically demanding and requires significant labor over large spatial, but short temporal, scales dictated by the ontogeny of the fish. However, the survival and dispersal behavior of Atlantic Salmon fry immediately after emergence from eggs planted in artificial nests …

Climate Change And An Evolving Fishery: Do Declining Maternal Size And Planktonic Foods Affect Lobster Larval Survival In The Gulf Of Maine?, Alexander J. Ascher

Electronic Theses and Dissertations

Many marine organisms exhibit bipartite life-cycles whereby reproductive adults dwell on the benthos while the larvae are pelagic. The pelagic stage is subject to mortality rates which far exceed those experienced by the organism during its benthic existence. The larval phase therefore represents an important bottleneck to larval recruitment. Small changes to survivorship in the plankton can have large consequences for subsequent year-class strength. Understanding the factors influencing successful larval recruitment is an important step towards predicting future stock abundances and maintaining healthy fisheries. The American lobster (Homarus americanus) is a large benthic crustacean which is economically and culturally important …

Biophysical Factors Impacting Sea Lice Settlement And Survival, Eleanor R. Glahn

Electronic Theses and Dissertations

Atlantic salmon (Salmo salar L.) aquaculture production in Maine is a valuable contributor to the economy, the expansion of which has been challenged by the parasitic salmon louse Lepeophtheirus salmonis. As planktonic organisms, the life of the salmon louse is primarily dictated by the physical conditions of the environment: the temperature for development time, salinity for survival, and current velocity for transport. Salmon lice are obligate parasites for whom the successful infection of a suitable host is critical to completion of their life cycle. However, little is understood about the effects of current velocity on infection success. Hydrodynamic …

Ontogeny Of Size-Specific Prey Selection And Handling Behavior Of Larval Lobster (Homarus Americanus), Evelyn M. Layland

Electronic Theses and Dissertations

The American lobster (Homarus americanus) plays an integral role in the coastal Northwest Atlantic as a benthic consumer and the target of the most valuable single-species fishery in North America. In the past decade, benthic recruitment of juvenile lobster has declined, even as egg production has increased, suggesting heightening levels of larval mortality. Recent correlative studies in the Gulf of Maine further suggest early stage larval survival may be related to the supply and composition of planktonic foods. Despite these correlative studies and the economic importance of the species, relatively little is yet known about how larval lobster …

A Small-Scale Wave Tank For Living Shoreline Extension And Outreach, Keith Chenier Jr, Jaden Akers, Skylar Liner, Shelby Harrier, Eric Sparks, Patrick Biber, Laura Blackmon, Jessica Kastler, Patrick Broussard

The Journal of Extension

Hardened structures, such as bulkheads and seawalls, are currently the primary choice of shoreline protection for waterfront property owners. However, hardened shorelines are known to enhance erosion and often promote the loss of intertidal habitat. Living shorelines are a collection of environmentally friendly construction techniques that serve as an alternative to hardened shorelines through the incorporation of natural materials, such as native plants. To enhance extension and outreach efforts related to the promotion of living shorelines, we created a small-scale, hands-on wave tank that demonstrates the benefits of natural and living shorelines relative to hardened structures. This interactive tool allows …

Improvement Of A Low-Cost Diy Wave Gauge, Matthew F. Virden, Nigel A. Temple, Bret M. Webb, Eric L. Sparks

The Journal of Extension

The impacts of waves on shorelines and nearshore ecosystems has highlighted the need for extension and other environmental professionals to have access to accurate and affordable wave measurements. The development of a low-cost DIY wave gauge improved the accessibility of these measurements; however, the original design was limited in battery life. Here, an improved version of the low-cost DIY wave gauge, the DIY Feather Wave Gauge, is presented with the same performance, longer battery life, smaller design, and cheaper cost along with tutorials, parts lists, and other resources. This new gauge has been used to improve shoreline management recommendations.

Trace Dna Detection Using Diamond Dye: A Recovery Technique To Yield More Dna, Leah Davis

Master's Theses

This study aspires to find a new screening approach to trace DNA recovery techniques to yield a higher quantity of trace DNA from larger items of evidence. It takes the path of visualizing trace DNA on items of evidence with potential DNA so analysts can swab a more localized area rather than attempting to recover trace DNA through the general swabbing technique currently used for trace DNA recovery. The first and second parts consisted of observing trace DNA interaction with Diamond Dye on porous and non-porous surfaces.

The third part involved applying the Diamond Dye solution by spraying it onto …

Rattus Norvegicus As A Biological Detector Of Clandestine Remains And The Use Of Ultrasonic Vocalizations As A Locating Mechanism, Gabrielle M. Johnston

Master's Theses

In investigations, locating missing persons and clandestine remains are imperative. One way that first responder and police agencies can search for the remains is by using cadaver dogs as biological detectors. Cadaver dogs are typically used due to their olfactory sensitivity and ability to detect low concentrations of volatile organic compounds produced by biological remains. Cadaver dogs are typically chosen for their stamina, agility, and olfactory sensitivity. However, what is not taken into account often is the size of the animal and the expense of maintaining and training the animal. Cadaver dogs are typically large breeds that cannot fit in …

An Overview Of Serial Depletions Of Global Marine Fisheries 1950 To 2019, Alison Follmer

Biological Sciences Undergraduate Honors Theses

Overfishing is a global issue that poses a significant risk to the entire ocean ecosystem in diminishing biodiversity and ecosystem function. This thesis examined the pattern and pace of fisheries depletions due to commercial fishing during the past 70 years. The Food and Agriculture Organization of the United Nations (FAO) Division of Fisheries and Aquaculture maintains a database of global hauls of marine taxa (reported in metric tonnes) from 1950 – 2019. These data were queried to determine the total number and sequence of fisheries depletions documented by the historic record. Analysis of this database showed progressive, linearly-increasing exploitation of …

Fecal Pellet Production By North Atlantic Zooplankton, Michael Gibson

Undergraduate Honors Theses

Fecal pellet carbon (FPC) production by zooplankton is a significant component of the ocean’s biological carbon pump: the suite of biological processes that mediate export of carbon to the deep ocean, ultimately leading to the sequestration of atmospheric carbon dioxide in the ocean. In this study, mesozooplankton (zooplankton 0.2 mm to ~2 cm) were collected from the epipelagic zone in the temperate North Atlantic Ocean during day and night in May 2021. Zooplankton were live separated into five size fractions and incubated on board ship in natural surface seawater to measure fecal pellet production rate of the mixed mesozooplankton community. …

Phylogeny And Taxonomy Of Himerometroidea (Echinodermata: Crinoidea), Kristian H. Taylor, Gregory W. Rouse, Charles G. Messing

Marine & Environmental Sciences Faculty Articles

Himerometroidea is a clade of chiefly shallow-water, tropical, feather-star crinoids that is currently divided, based on morphology, into four families comprising 119 extant species in 31 genera. Our molecular phylogenetic results, based on three mitochondrial (CO1, 16S, CytB) and two nuclear (ITS and 28S) markers for 55 accepted species in 23 of the extant genera, allow for six clades within Himerometroidea to be given family ranks. Maximum parsimony, maximum likelihood, and Bayesian inference analyses recovered largely congruent topologies with varying nodal support. A new classification revises generic placements among five families: Himerometridae, Colobometridae, and Mariametridae, all retained, and Pontiometridae and …

Determination Of Cadmium Uptake In Crassostrea Virginica Shell Under Controlled Conditions, Joseph John Pavelites Ii

Theses and Dissertations

The objective of this thesis was to meet growing demand for the development of environmental biomonitors that protect ecosystems and public health. To do this, I determined the potential of oyster shell as a bioindicator of cadmium (Cd) in the environment by determining the mode of Cd uptake and relationships between Cd concentrations in the environment, shell, and soft tissues of juvenile eastern oysters (Crassostrea virginica Gmelin). I performed a review of the literature on the ability of oyster shell to retain metal contaminants and the factors that could affect this process (Chapter 2). I then reared C. virginica …

Sulfolipid Substitution Ratios Of Microcystis Aeruginosa And Planktonic Communities As An Indicator Of Phosphorus Limitation In Lake Erie, Robbie M. Martin, Maddie K. Denney, Helena L. Pound, Justin D. Chaffin, George S. Bullerjahn, R. Michael L. Mckay, Arthur Zastepa, Katarina A. Jones, Hector F. Castro, Shawn R. Campagna, Steven W. Wilhelm

Great Lakes Institute for Environmental Research Publications

Phosphorus (P) availability frequently limits primary production in lakes, influences the physiology of phytoplankton, shapes community structure, and can stimulate or constrain the formation of cyanobacterial blooms. Given the importance of P, numerous methods are available to assess P stress in phytoplankton communities. Marine phytoplankton are known to substitute sulfolipids for phospholipids in response to P limitation. We asked whether sulfolipid substitution might serve as an additional indicator of P stress in freshwater phytoplankton communities. The question was addressed using cultures of Microcystis aeruginosa, Lake Erie microcosms, and surveys of lipid profiles in Lake Erie during a Microcystis spp. bloom. …

Predictive Ecology And Management Of Phyllosphere Microbial Communities Through Cross-Scale Synthesis, David W. Armitage, Morgan E. Carter, Robin A. Choudhury, Mitja Remus-Emsermann, Cindy E. Morris, Johan H. Leveau, Linda L. Kinkel, José Pablo Dundore-Arias

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Here we summarize the main takeaways from a symposium and hybrid virtual and in-person participatory discussion focused on the challenges of scale in understanding the ecology and management of phyllosphere microbial communities. We provide an overview of the confounding effects of spatial scale on inference in microbial ecology, the spatial organization of microbial interactions in the phyllosphere, advances and remaining gaps in measuring phyllosphere colonization across scales, and the epidemiology in the phyllosphere. We hope to motivate further discussion and the development and adoption of creative approaches to solving the challenges of scale to enhance fundamental understanding and practical management …

A Forensic Assessment Of Current Water Quality Using Idexx Techniques In The Himmarshee Canal And New River In Fort Lauderdale, Florida, Catherine Margaret Bilodeau

All HCAS Student Capstones, Theses, and Dissertations

Fecal contamination has continued to plague local communities around the United States and the world, especially in highly populated areas like Southern Florida. Newer techniques are beginning to be used to track microbes properly as they are found in waterways. Some more recent techniques in Microbial Source Tracking (MST) use IDEXX kits to detect fecal indicator bacteria (FIB). Two IDEXX kits Colilert-18^® which detects total coliforms and Escherichia coli in water or fecal coliforms in wastewater, and Enterolert^®, which targets enterococci, were used in the waterways of the Himmarshee Canal and South Fork of the New River …

Exploring Host-Parasite Interactions In The Euhaplorchis Californiensis-Fundulus Parvipinnis System, Bennett J. Perry

All HCAS Student Capstones, Theses, and Dissertations

Parasites with complex life-cycles may alter their intermediate host’s phenotype to increase the chance of successful transmission to their next host. This parasite-induced host modification often occurs in the form of behavioral changes, such as increased frequency of irregular locomotor behaviors (e.g., conspicuous behaviors), particularly in systems where the parasite is transmitted trophically through a predation event. However, most empirical evidence of host behavioral modification by parasites comes from a few model host-parasite systems and are frequently studied following a stressor (e.g., simulated predator attack). One host species studied is the California killifish Fundulus parvipinnis, which is infected by …