Marine Biology Commons^™

Microplastics Contamination In Marine Environment: Sources And Management Strategies, Aishah Hamdi, Mohammad Oves, Naser Alkenani, Majed Alshaeri

Journal of King Abdulaziz University: Marine Science

Microplastics (MPs) have been identified as emerging global pollutants because of their persistence, mobility, and significant ecological impacts. These particles, which result from the degradation of plastic waste and from various industrial and consumer activities, are now widespread in marine environments. The capacity of MPs to adsorb contaminants and bioaccumulate within food webs increases their ecological and health risks, prompting substantial concern regarding their long-term consequences for marine ecosystems and human health. This review synthesizes current knowledge regarding the composition, sources, transport, mechanisms, and environmental behavior of microplastics (MPs), with particular emphasis on marine systems. In these environments, the persistence …

Multi-Label Seabed Image Classification: A Comparative Study Of Deep Learning And Machine Learning Models, Anis Bel Hadj Hassin, Elyes Omri

Journal of King Abdulaziz University: Marine Science

This study evaluates the effectiveness of deep learning and machine learning models for classifying seabed images into three ecologically significant categories: algae, rocks, and sand. We investigated five models: ResNet50, VGG16, a custom-designed convolutional neural network (CNN), support vector machines (SVM), and random forests (RF). Deep learning models were fine-tuned on 1259 seabed images, with the custom CNN architecture optimized using depthwise separable convolutions and global average pooling. For SVM and RF, features were extracted using a pre-trained VGG16 network. Class weighting was applied to address potential imbalances in the dataset. The custom CNN achieved the highest validation accuracy (82.01%), …

Microplastic Analysis In Fish Larvae (Family: Gonostomatidae And Myctophidae) From The Banggai Sea, Indonesia, Noer Kholis, Luqman Ilyas Ardito, Luqmanul Hakim, Augy Syahailatua, Agus Saleh Atmadipoera, Rina Zuraida, Tuan Nurul Sabiqah Tuan Anuar, Mufti Petala Patria

Makara Journal of Science

Microplastic pollution is recognized as a threat to marine ecosystems, yet its impacts on early life stages of mesopelagic fishes remain poorly understood. This study investigated the occurrence and characteristics of microplastic ingestion in fish larvae of the families Myctophidae and Gonostomatidae from the Banggai Sea, Indonesia. Morphometric measurements and microplastic content were analyzed in 40 larvae (20 per family). Gonostomatidae larvae, despite being smaller in total length, exhibited significantly larger mouth widths and ingested more microplastic particles (mean = 3.90 ± 0.72 particles) than Myctophidae (mean = 3.40 ± 0.38 particles). Correlation analysis showed no significant relationships between morphometric …

Ontology-Based Decision Support System For Improving Aquaculture Management, Thuy Thi Thu Pham, Phuong Thi Can, Nga Thi Thanh Ha

Journal of Marine Science and Technology–Taiwan

Early detection of shrimp diseases is vital for reducing losses and ensuring sustainable aquaculture. In this study, a novel ontology-driven framework for shrimp disease diagnosis that integrates environmental knowledge with machine learning-based image analysis is proposed. An ontology was constructed from a structured dataset of environmental parameters and farm conditions related to shrimp diseases, which formally represents concepts such as farm characteristics, environmental factors, symptoms, and disease types. Two public shrimp image datasets were subsequently used to train convolutional neural networks (ResNet50 and MobileNetV2) for automated disease classification. The predicted disease labels and confidence scores were mapped onto the ontology. …

Case Study On Operational Performance Improvement By Turbocharger Nozzle-Ring Modification In Shipboard Generators, Jong-Hun Im, Mukyeong Kang, Sang-Deuk Lee

Journal of Marine Science and Technology–Taiwan

Owing to increasingly stringent emission regulations imposed by the International Maritime Organization and rising fuel prices, the demand for enhanced energy efficiency and emission control in marine power systems is increasing. This study presents a case study in which the performance of an aging auxiliary generator is restored by modifying the turbocharger nozzle ring. The vessel, a 12-year-old crude-oil tanker, experienced repeated operational issues with its No. 3 generator. This included elevated exhaust gas temperatures, reduced intake air pressure, and frequent turbocharger surges. To address these challenges, the nozzle-ring blade angle was reduced by approximately 2° using spare components, while …

Towards Sustainable Marine Education: Assessing High School Students’ Understanding Of Conservation Concepts, Cheng-Chieh Chang, Tsuyoshi Sasaki, Ya-Yin Liao, Ling-Ya Hung, Liang-Ting Tsai

Journal of Marine Science and Technology–Taiwan

This study assesses the concepts of marine resource conservation and sustainability among Taiwanese high school students by developing a Chinese version of the Marine Resources Conservation and Sustainability Scale. Grounded in the cognitive, socio-emotional, and behavioral learning objectives outlined in UNESCO’s Education for Sustainable Development Goals (ESDGs), the scale targets students aged 16 to 18 to examine gender differences in marine knowledge and conservation concepts. The scale comprises 31 items across four dimensions: the first section evaluates marine knowledge, while the remaining dimensions utilize a four-point Likert scale to assess cognitive, socio-emotional, and behavioral learning objectives, respectively. The results indicate …

Dynamic Governance Of Transboundary Fisheries Through Deep Learning And High-Frequency Vessel Tracking Data For Climate-Resilient Management: An Application To The East China Sea, Qin Lin, Yaqing Shu, Manel Grifoll, Hongxiang Feng

Journal of Marine Science and Technology–Taiwan

Transboundary fisheries governance is increasingly challenged by jurisdictional conflicts, regulatory asymmetries, and climate-induced stock shifts in fish stocks, especially in contested regions like the East China Sea (ECS). This study capitalizes on China’s high-frequency BeiDou Navigation Satellite System (BDS) data (June 2021–May 2022) to pioneer a CNN-BiLSTM deep learning model to dynamically identify fishing hotspots and evaluate policy effectiveness. By integrating vessel trajectories, environmental variables, and regulatory events, we examine spatiotemporal patterns of fishing effort relative to seasonal bans, extreme weather, and quota systems. Key findings reveal: (1) post-moratorium (September–December) concentration of fishing intensity, peaking in November; (2) significant weather-driven …

Lock Scheduling Decisions And Strategy Optimization Under Operation Interruption Scenarios, Junhe Li, Qiang Zhang, Junpeng Jiang, Jiangchao Bao

Journal of Marine Science and Technology–Taiwan

Locks are critical nodes in inland waterway transportation systems that concentrate vessel traffic between upstream and downstream reaches, making their operations highly sensitive to hydrological conditions. Therefore, disruptions caused by droughts, floods, or routine maintenance can easily trigger congestion. To address this issue, this study systematically examines the interrelationships among the number of ships awaiting passage, scheduling strategies, the trade-off between lock chamber utilization and ship waiting time, the influence of ship entry sequences on user satisfaction, and the combined effects of these factors on overall lock scheduling performance. Based on these analyses, an integrated decision-making model for two-stage ship …

Corrosion Protection Assessment Of Offshore Wind Turbine Substructures Using Beasy Cp Simulation Analysis, Chuan-Yang Wan, Hung-Hua Sheu, Sheng-Yu Wang, Yao-Ming Wang, Wei-De Chen, Ming-Yuan Lin, Hung-Bin Lee

Journal of Marine Science and Technology–Taiwan

This study investigates the corrosion protection assessment of offshore wind turbine substructures established in the waters off Keelung, Taiwan. First, a cathodic protection system for the monopile foundation is designed and established. The Boundary Element Method (BEM) is applied using the BEASY simulation software to develop a 3D geometric model for cathodic protection. In the steel monopile simulation analysis, the exposed marine environment is set based on the sea conditions of the Keelung small boat marina, including parameters such as salinity, resistance, and polarization curves, to establish an effective cathodic protection system for underwater structures. By simulating these parameters, a …

Face-To-Face Versus Distance Education In Competence-Based Maritime Education And Training, Clara Borén, Marcella Castells-Sanabra, Manel Grifoll

Journal of Marine Science and Technology–Taiwan

The COVID-19 pandemic created significant challenges for higher education, with universities being shut down and face-to-face teaching and assessment shifting to an online format. This presented an opportunity to focus on the continuity of learning through distance education, especially in the maritime context, due to the on-board training requirements, and even though five years have passed, this shift has reshaped the education landscape, proving that remote learning has come to stay.

At the Barcelona School of Nautical Studies, we have developed a weather routing software in the framework of distance education and teaching innovation. We conducted a teaching trial alternatively …

A Bibliometric And Visualization Analysis Of Global Giant Clam Research, Chia-Hsiang Chen, Chih-Hsien Chang

Journal of Marine Science and Technology–Taiwan

In this study, bibliometric analysis and visualization tools were used to investigate the academic network and knowledge structure surrounding global giant clam research. A total of 551 relevant publications from the Web of Science database, published from 1900 to 2024, were analyzed. The findings indicate that research on giant clams has experienced considerable growth since 2012, peaking in publication output in 2021. Sixty-six countries were represented in the study sample, with the United States, Australia, China, Singapore, and Japan being the most represented ones. Notably, the rate of international collaboration was only 29%, highlighting a need for additional integrated cross-border …

Examining The Relationship Between Civic Agriculture Participation And Civic Engagement In South Texas, Allison Kaika, Dongkyu Kim, William Donner, Alexis Racelis, Owen Temby

School of Earth, Environmental, & Marine Sciences Faculty Publications

Civic agriculture is often credited with strengthening democratic life by encouraging civic and political engagement, yet this claim has scarcely been tested in socioeconomically marginalized regions. Using original survey data collected through a combination of random and purposive sampling, this study assesses that relationship in the Lower Rio Grande Valley of Texas, a majority-Hispanic agricultural region marked by high poverty and low civic participation. Phone and online surveys were administered in English and Spanish to reach both the general population and individuals involved in civic agriculture initiatives, yielding over 400 responses. We examine whether civic agriculture participation predicts greater community …

Comparison Of Fish Biomass And Fish Carbon Content Associated With Reef Sites At The Rio Grande Valley Artificial Reef In The Gulf Of Mexico, Allison K. White, Md Saydur Rahman, Richard J. Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

As global fisheries stocks have decreased due to overfishing and climate change, artificial reefs have gained significant attention. In addition to providing or restoring habitat, artificial reefs may serve as carbon capture sinks and potential climate mitigation strategies. The Rio Grande Valley (RGV) Reef is an artificial reef located in the northwestern Gulf of Mexico off the coast of Texas. The RGV Reef area spans 1,650 acres and is comprised of hundreds of groupings of recycled and pre-formed materials ranging from low relief (1–2 ft) to high relief (8–30 ft) reef structures. This reef provides a variety of novel habitat …

Recreational Fishing Location Guide, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Occasional Publications

Please note: this version (6th edition) published in 2026 replaces the version published in 2023.

This guide has been developed to help you identify the fishing locations that you may visit. The purpose of this guide is to enhance consistent and accurate identification of fishing locations and block numbers within each Bioregion. If you are unsure about a particular location, please discuss it with a representative of the Department of Primary Industries and Regional Development, Western Australia.

Evaluating Species At Risk In Data-Limited Fisheries: A Productivity–Susceptibility Analysis For Marine Aquarium Fish, Gabrielle A. Baillargeon, Alice A. Wynn, Jemelyn Grace P. Baldisimo, Michael F. Tlusty, Andrew L. Rhyne

Arts & Sciences Faculty Publications

The marine aquarium trade (MAT) is a significant global industry harvesting millions of wild-caught, live coral reef fishes for public and private aquaria markets in the United States and Europe annually, while supporting fisher livelihoods in the Indo-Pacific. This diverse and species-rich trade is considered data-limited, creating barriers to quantifying the current and future socio-ecological sustainability of the fishery. We present a revised and expanded productivity–susceptibility analysis (PSA) that serves as a holistic risk assessment to estimate the vulnerability of marine aquarium fish to overfishing. Our global analysis includes 306 species that are actively in trade. Improvements to the PSA …

Coral Larvae Have Unique Transcriptomic Responses To Pathogenic And Probiotic Bacteria, Erin M. Borbee, Isabella V. Changsut, Kira Bernabe, Alicia Schickle, David Nelson, Koty H. Sharp, Lauren E. Fuess

Arts & Sciences Faculty Publications

The growing prevalence of coral disease and other stressors threatens coral reefs, and evidence suggests these stressors not only affect adult corals but may also have impacts on early life stages. Yet, our understanding of coral larval physiology, including immunological function, is significantly limited. Here, we leverage the temperate coral experimental system Astrangia poculata to investigate the transcript-level response of A. poculata to exposure to pathogenic and probiotic bacteria. The bacteria tested in the experiment were the known coral pathogen (Vibrio coralliilyticus RE22) and a probiont (Phaeobacter inhibens S4) previously demonstrated to inhibit the pathogen’s growth. In this study, we …

Marine Heatwaves And Fish Reproduction: Endocrine Responses In The Eurythermal Sheepshead Minnow (Cyprinodon Variegatus), Isabel Villafuerte

Master's Theses

Marine heatwaves associated with climate change are increasing in frequency and severity, posing significant threats to fish populations in shallow habitats such as estuaries and salt marshes. Because temperature is a primary regulator of fish reproduction, understanding how heatwaves affect reproductive physiology is critical for anticipating the biological consequences of ongoing climate change for coastal fishes. Here we examined how simulated heatwave conditions affect the reproductive hypothalamic-pituitary-gonadal (HPG) endocrine axis in the estuarine sheepshead minnow (Cyprinodon variegatus), a eurythermal fish well suited to studying thermal stress responses in estuarine environments. Adult sheepshead minnows acclimated to a daily oscillating …

Evaluating The Commercial Aquaculture Potential Of The Native Pacific Littleneck Clam (Leukoma Staminea) As A Climate Resilient Alternative To The Non-Native Manila Littleneck Clam (Ruditapes Philippinarum)., Skylar M. Wuelfing

Master's Theses

The California shellfish industry’s near-exclusive reliance on the non-native Manila littleneck clam (Ruditapes philippinarum) creates an economic vulnerability to climate-driven disturbances, which can cause mortality events that eradicate up to 80% of stocks. This singular reliance on an introduced species highlights a need for the evaluation of native alternatives like the Pacific littleneck clam (Leukoma staminea). Our goal was to assess the feasibility of using the native Pacific littleneck in commercial aquaculture by comparing their performance to the non-native Manila littlenecks across the following conditions: 1) a five-month field outplant trial at high and low intertidal …

Blue Carbon Stocks, Accumulation Rates And Knowledge Gaps In Africa, Janine B. Adams, Pattrick, Pere Masqué, Dennis Adotey, Elsheikh Bashir Ali, Abdelgadir Bashir Mohamed Awatif, Mohamed Fathi Ben Hamouda, Moncef Benmansour, Joseph F. Charles, Jerome Harlay, Lucienne Human, Linet Kiteresi Imbayi, Rashid Omari Ismail, Anesu Machite, Nezha Mejjad, Athi N. Mfikili, Ndanu Mumo, Maurice Ndeye, Wilfried Essowè Panassa, Issa Sakho, Suleiman Suleiman, Vanessa Hatje

Research outputs 2022 to 2026

Blue carbon ecosystems (BCEs), including mangroves, salt marshes, and seagrasses, play a critical role in climate mitigation due to their high carbon sequestration capacity. Despite Africa's extensive and diverse coastal ecosystems, continent-wide assessments of blue carbon stocks and accumulation rates remain scarce. Here, we synthesized blue carbon data from 87 publications (January 1993 - March 2026) to evaluate the current state of knowledge and regional variability. Our analysis reveals marked regional heterogeneity in sediment organic carbon (SOC) stocks across Africa, reflecting both ecological variability and methodological differences among studies. Normalised to a sediment depth of 1 m, median SOC stocks …

Geographic Range And Body Size Influence Abundance Patterns In Reef Fishes, M. F. Maxwell, D. R. Barneche, R. Divieso, S. R. Floeter, O. J. Luiz, A. L. Luza, M. R. Pie, A. C. Siqueira, M. G. Bender

Research outputs 2022 to 2026

Aim: Understanding how body size and geographic range size influence species abundance is central to macroecology. Here, we characterized these relationships for reef fishes, the world's most diverse vertebrate group, across global and regional scales. Location: Global tropical and subtropical reefs. Time Period: Current. Major Taxa Studied: Reef-associated fishes. Methods: We compiled a comprehensive dataset on abundance, body size and geographic range size for 828 reef fish species. Abundance was measured as density (ind/m²) using transect-based observational data. To analyse global-scale patterns, we applied Bayesian quantile regressions and Bayesian phylogenetic regressions to account for phylogenetic relatedness. We also …