Biotechnology Commons^™

Screening Of Clostridium Sp. For Butanol Production From Sato (Thai Rice Wine) Factory Wastewater, Julalak Buranaprasopchai

Chulalongkorn University Theses and Dissertations (Chula ETD)

The production of Sato, a Thai traditional beverage, yields Sato wastewater (STW), which contains residual rice constituents with high chemical and biological oxygen demands and so forms an environmental problem. In addition, STW often smells rotten from the formation of hydrogen sulfide. To solve this problem, the composition of STW was analyzed for its physiological and chemical characteristics to evaluate its potential as a substrate for ABE fermentation using Clostridium spp., which has never been reported for use in acetone-butanol-ethanol (ABE) fermentation before. Solvent-producing Clostridium isolates were obtained from environmental sources in Thailand, and that producing the highest butanol level …

Identification And Application In Plant Of Plant Growth-Promoting Endophytic Bacteria, Kanchana Sitlaothaworn

Chulalongkorn University Theses and Dissertations (Chula ETD)

Seventy-eight endophytic bacteria isolated from 15 plant samples in Thailand including 50 isolates from sugarcane root samples obtained from 6 Provinces and 28 isolates from stems and leaves of healthy plants in Kanchanaburi Province, were identified and evaluated for plant growth promoting capability using rice as a plant model. They were identified as Gluconacetobacter (37 isolates), Pantoea (14 isolates), Burkholderia (2 isolates), Pseudomonas (4 isolates), Priestia (4 isolates), Enterobacter (2 isolates), Acinetobacter (2 isolates), Novosphingobium (2 isolates), Curtobacterium (2 isolates), and each of Nguyenibacter, Aureimonas, Bacillus, Peribacillus, Sphingobium, Staphylococcus, Brevibacillus, Aneurinibacillus, and Pseudarthrobacter based on their phenotypic characteristics and 16S …

Anti-Pathogenic Yeast Malassezia Globosa Activity By Propolis Of Stingless Bee Geniotrigona Thoracica, Kawisara Konsila

Chulalongkorn University Theses and Dissertations (Chula ETD)

Malassezia globosa is a lipophilic pathogen which relates to various chronic skin diseases. Azole drugs are main available treatments, but they have been reported with many side effects and microbial drug resistance. Therefore, the alternative medications should be developed. As the antimicrobial activity of propolis is outstanding, this study aims to investigate the potential of propolis from stingless bee, Geniotrigona thoracica against the pathogenic yeast. The extraction and characterization of the propolis components were done after the obtained extracts were evaluated for anti-M. globosa growth by using agar well diffusion assay and broth microdilution assay. Moreover, Inhibitory Concentration values at …

Antiproliferative Agents From Mushroom Phellinus Sp., Kulrut Pichayaphinyo

Chulalongkorn University Theses and Dissertations (Chula ETD)

In this study, Phellinus powdered (600 g) was extracted with methanol and DI water. The methanolic crude extract of the mushroom was partitioned with hexane, dichloromethane, ethyl acetate and methanol respectively. All crude extracts were evaluated antiproliferative activity against lung cancer (A549) and neuroblastoma (SH-SY5Y) cell lines by MTT assay. It was found that the dichloromethane extract (CDE) exhibited the strongest antiproliferative activity with half maximal inhibitory concentration (IC50) values of 132.4 and 106.87 µg/mL against human lung cancer and neuroblastoma cell lines, respectively. The ethyl acetate extract (CEE) exhibited moderate antiproliferative activity with IC50 values of 138.64 and >250 …

Effect Of Genipin Cross-Linking On Properties Of Chitosan Based Bio-Composite Film, Patthrare Inthamat

Chulalongkorn University Theses and Dissertations (Chula ETD)

Active packaging from chitosan film incorporated with astaxanthin is limited commercial application in the food industry due to its high moisture permeability and poor tensile strength. To overcome these problems, crosslinking of the film with genipin and heat curing to improve film properties were proposed. Firstly, the effects of genipin concentration on the physical, moisture barrier and mechanical properties of chitosan films incorporated with astaxanthin were investigated. Chitosan film was prepared by mixing chitosan in 2% (w/w) lactic acid. The chitosan was incorporated with astaxanthin at 0 and 1% (w/w of chitosan) (marked as CS and CA or CSA) and …

Advancing Competency In Managing Risk And Knowledge: Steps Toward Operationalisation Of The Risk-Knowledge Infinity Cycle (Rki Cycle) - Part 1: Improving Effectiveness Of Risk-Based Decision Making (Rbdm), Martin Lipa, Paige Kane, Anne Greene

Articles

To date, literature on the Risk-Knowledge Infinity Cycle (RKI Cycle) has mainly been theoretical. This paper series intent is to focus on the operationalisation of the RKI Cycle by describing a series of steps – the “How to” – for RKI Cycle deployment, to help move the RKI Cycle from theory to practice. The first paper in this series focuses on how the RKI Cycle can support effective Risk-Based Decision Making (RBDM).

An Exploration On Apts In Biocybersecurity And Cyberbiosecurity, Xavier-Lewis Palmer, Lucas Potter, Saltuk Karahan

School of Cybersecurity Faculty Publications

Novel and complex digital threats that are increasingly interwoven with means and products of biology that can affect society. Much work in Biocybersecurity/Cyberbiosecurity (BCS/CBS) discuss vulnerabilities, but few deeply address malicious actor varieties as attacks at this intersection are new. The path to those attacks remains mostly theoretical, presenting considerable difficulty to accomplish in practical scenarios. In terms of advanced persistent threats (APTs) this of course needs to change as biomanufacturing facilities are at risk, considering Covid-19 and other potential pandemics. Further attacks are not out of reach and thus we must start to imagine how BCS APTs may appear. …

Optimization Of In-Vitro Tissue Culture And Transformation System For Sweet Sorghum Cultivars Using Immature Inflorescence, Logayn Abushal

Theses and Dissertations

Background: Sweet sorghum is a multi-purpose crop that can be used for human food, animal feed, and bio-fuel production. This crop is drought-tolerant and can therefore be grown in arid and semi-arid regions especially in marginal areas in Egypt. Nevertheless, production of Sweet sorghum cannot coup with the increasing demand in consumption as a food, and fuel due to a lag in scientific research regarding its genetic improvement. Therefore, genetic improvement of Sweet sorghum is innately required so that new traits of economic importance could be introduced; however, this can only be achieved through the establishment of a robust in-vitro …

Reproducibility Of Individual Dna Deposits Detected Through Cellular Fluorescence, Natalee Small-Davidson

Student Theses

Contact traces are an important part of DNA casework, but the probative value of any identified associations depends on the possibility of passive transfer. There is known individual variation in DNA left behind during contact, this DNA shedding propensity has an effect on whose DNA is detected. This study evaluated this variability using a cell staining approach. Volunteers were asked to deposit a fingerprint on a clean glass slide, then wash their hands and deposit a second fingerprint after a 30-minute wait without touching anything. Three sets of samples were collected over three consecutive weeks. Fingerprints were stained with a …

Rapid Land Assessment For Salt Farming Development In The Coastal Area Of The Special Region Of Yogyakarta, Indonesia, Malawani Mukhamad N., Marfai Muh Aris, Yoga Aldhila G. H., Handayani Tiara, Cahyadi Ahmad, Sadali Mohammad Isnaini, Mahasin Mohamad Zaki, Hendratmoro, Suadi, Wiyono Maryadi Budi

ASEAN Journal on Science and Technology for Development

The government of Indonesia has faced several challenges to its goal of achieving salt self-sufficiency, necessitating the formulation and implementation of strategic steps to increase salt production. Among its islands, Java has a great deal of potential for salt production, as does the Special Region of Yogyakarta, where the government has initiated salt farming development as part of its coastal community empowerment program. This study aimed to (1) evaluate the land suitability of existing salt farms and (2) identify potential sites and make a productivity estimation of salt farms in the Special Region of Yogyakarta, with the broad objective of …

Bcsa Rawmix Design: Correlation Between Chemical Constituents And Mineralogy, Palla Suresh, Vanguri Suresh, Ramakrishna S, Chaturvedi S. K, Mohapatra B. N

ASEAN Journal on Science and Technology for Development

The cement industry has been identified as one of the main contributors to climate change due to greenhouse gas emissions, mainly CO2. Therefore, to meet CO2 reduction targets, cement producers are working on different strategies of minimizing its emission, one of which is alternative clinkers. This study assessed the impact of variations of the raw mix design, concerning the type and proportions of materials, on the formation of calcium sulphoaluminate belite-type clinkers. Various materials were used to produce raw mixes for different percentages of belite, yeeliminite, and other minerals in resultant clinkers. Computer-based theoretical mixes were designed with different percentages …

Analyzing The Application Of Void Decks On High-Rise Affordable Housing In Jakarta, Indonesia, To Achieve Optimal Urban Ventilation, Ririhena Megan Afkasiga, Syafii Nedyomukti Imam

ASEAN Journal on Science and Technology for Development

Economic growth in ASEAN countries encourages significant urbanized growth. In line with the growth of urbanization, large swathes of residential buildings have been constructed in urban areas, especially, in the case of Indonesia, through the government's 1000 rusun (high-rise affordable housing) development program in Jakarta. In order to reduce energy consumption and create a sustainable rusun, a passive strategy is needed in the form of natural air conditioning through optimized natural ventilation in these buildings. In this study, testing was conducted on Rusun Rorotan in Jakarta, from two wind source directions (north and northwest) with five void decks configuration samples …

Dielectric Relaxation Studies Of Hydrogen Bonded Complexes Of Benzamide And Acetamide With Halogenated Phenols Using X-Band Microwave Frequency, Basha A. Aathif, Khan F. Liakath Ali

ASEAN Journal on Science and Technology for Development

At 308 K, using a 9.37 GHz dielectric relaxation setup, dielectric studies of hydrogen bonded complexes of benzamide and acetamide with 4-fluorophenol, 4-bromophenol, 4-chlorophenol, and 4-iodophenol in benzene were performed. Various dielectric parameters (such as ?', ?'', ?0, ??) were tested. The steric interactions of the proton donor determined the group rotation relaxation time t(2), whereas the significance of the single frequency method of Higasi et al. for multiple relaxation time t(1) was determined by the hydrogen bonding power of the phenolic hydrogen. The presence of a 1:1 complex system between the prepared samples, as well as a charge transfer …

Potential Of Three Taro (Colocasia Esculenta L.) Cultivars As Animal Feed, Setyawan Hidayat Bambang, Yulianto Roni, Zelin Oviaki, Purnamasari Listya

ASEAN Journal on Science and Technology for Development

The growth and yield of taro (Colocasia esculenta L.) plants are influenced by the planting material. The use of planting material derived from corms is expected to improve the quality and quantity of taro growth and yield. This research aimed to find the best type of planting material and cultivars for taro growth and the potential of taro plants as animal feed. The experiment was carried out in Jember, East Java ( elevation ±89 m asl). The experiment used the randomized completed block design method with two treatment factors, the type of planting material (B) as the first factor (B1: …

Study Of Microstructure And Mechanical Properties Of As-Built And Heat-Treated Additive Manufactured Inconel 718 Alloy, Maurya Ajay Kumar, Kumar Amit

ASEAN Journal on Science and Technology for Development

Additive manufacturing technology is becoming popular in the industry because it allows the manufacturer to fabricate cost-effective, strong, lightweight, and complex-shaped parts directly from 3D design data as compared with the conventional manufacturing method. Inconel 718 alloy is the most demanding material in aviation as well as in the automobile industry, in terms of manufacturing high-performance parts. In this study, Inconel 718 samples were built using the direct metal laser sintering process, and standard heat treatment was performed on the samples to improve their microstructure and mechanical properties. The as-built samples exhibited good grain structure with fine laves phases, but …

Deep Learning For Human Microrna Precursor Prediction: A Systematic Literature Review, Martina Ojonah

Master of Science in Information Technology Theses

The discovery of MicroRNA (miRNA) sparked medical breakthroughs, leading to the development of drugs/vaccines and biomarkers for some terminal diseases such as cancer. Due to the relatively short length of microRNAs, research has shown that discovering them on their own is a difficult task; thus, the focus has shifted to predicting precursor miRNAs, which are longer than miRNAs. Computational techniques evolve because of flaws discovered in existing designs, discoveries, and the desire to make the process as seamless as possible. Most researchers in recent studies indicated that the use of few input features and a lack of domain understanding of …

Identifying Micrornas Panel Associated With Hepatocellular Carcinoma In Serum Of Chronic Hepatitis C Patients, Areeg Dabbish

Theses and Dissertations

Introduction: early detection of hepatocellular carcinoma (HCC) will reduce morbidity and mortality rates of this poorly diagnosed widely-spread disease. Dysregulation in microRNA (miRNAs) expression is associated with HCC progression. Objective: Is to identify a panel of differentially expressed miRNAs (DE-miRNAs) to enhance HCC early prediction in hepatitis C virus (HCV) infected patients. Methodology: Candidate miRNAs were selected using bioinformatic analysis of microarray and RNA-sequencing datasets, resulting in nine DE- miRNAs (miR-142, miR-150, miR-183, miR-199a, miR-215, miR-217, miR-224, miR-424 and miR-3607). Their expressions were validated in the serum of 44 healthy individuals, 62 non-cirrhotic HCV patients, 67 cirrhotic-HCV and 72 HCV-associated …

Real-Time Monitoring Of Cell Death Progress Using Capacitance Spectroscopy, Suyang Wu

Electronic Theses and Dissertations

Biologics, including the monoclonal antibody (mAb), has experienced rapid development in the last decade. However, the price of biologics is often prohibitively high because of the low process efficiency. Delaying the inevitable cell death improves the productivity of upstream bioprocessing, whose success relies on monitoring the cell death onset that indicates the timing for preventive actions.

This study proposes to develop a real-time monitoring model that quantifies the dying cell percentage in lab-scale bioreactors using capacitance spectroscopy. The capacitance spectroscopy contains cell death-related information due to various physical properties changes during the cell death process, e.g., cytoplasmic conductivity change. The …

Development Of Polymeric Cxcr4 Targeting Carriers For Sirna Delivery To Treat Acute Kidney Injury, Weimin Tang

Theses & Dissertations

Acute kidney injury (AKI) is a major kidney disease that is characterized by a sudden loss of renal function which manifests by a decrease in urine output and an increase in serum creatinine. AKI is a global healthcare burden associated with high morbidity, mortality, and increasing cost. Currently there are no effective pharmacological treatments available. Apoptosis induced by p53 has been demonstrated as an important pathological mechanism for the development of AKI. Meanwhile, CXCR4/SDF-1 axis has been associated with the inflammation during AKI, and CXCR4 is overexpressed on injured tubules. This dissertation hypothesized that polycations with CXCR4 targeting ability could …

A Pkcα-Mediated Growth Suppressive Mek-Erk Signaling Axis In Intestinal Epithelial Cells, Navneet Kaur

Theses & Dissertations

Members of the protein kinase C (PKC) family of serine/threonine kinases are involved in regulation of fundamental cellular functions, including proliferation, differentiation, survival, migration, and transformation. Increasing evidence points to anti-proliferative and tumor suppressive role of PKCs. Our laboratory and others have reported that the classical PKC isozyme, PKCαnegatively regulates proliferation and tumorigenesis in the intestinal epithelium. Our laboratory has further determined that PKCα signaling induces a program of cell cycle withdrawal in intestinal epithelial cells that involves downregulation of the pro-proliferative proteins, cyclin D1 and Id1, and upregulation of the cyclin dependent kinase (CDK) inhibitor, p21^Cip1. Unexpectedly, …