Biodiversity Commons^™

Historical And Future Role Of Wilmar Palm Oil In Deforestation Of Indonesian Borneo, Sam Coroniti Iii

Senior Theses

Borneo is one of the most biologically diverse locations on Earth, with thousands of endemic and rare species forming unique and intricate relationships throughout the ecosystems. Orangutans, elephants, leopards, tigers, rhinos, and many more species call this island their home, although population levels for all of the mentioned species have been in seriously decline over recent decades. The loss of primary rainforest that provides the most critical habitat for these species has occurred at the highest rate that has ever been seen on Earth, leading to extreme land conversion and greenhouse gas producing operations. The primary driver of these actions …

A Natural Experiment Identifies An Impending Ecological Trap For A Neotropical Amphibian In Response To Extreme Weather Events, Morgan A. Clark, William M. Ota, Sierra J. Smith, Brett K. Muramoto, Summer Ngo, Gabriella E. Chan, Maxwell A. Kenyon, Matthew C. Sturtevant, Max G. Diamond, Gary M. Bucciarelli, Lee B. Kats

All Faculty Open Access Publications

Extreme weather events are predicted to increase as a result of climate change, yet amphibian responses to extreme disturbance events remain understudied, especially in the Neotropics. Recently, an unprecedented windstorm within a protected Costa Rican rainforest opened large light gaps in sites where we have studied behavioral responses of diurnal strawberry poison frogs (Oophaga pumilio) to ultraviolet radiation for nearly two decades. Previous studies demonstrate that O. pumilio selects and defends perches where ultraviolet radiation (UV-B) is relatively low, likely because of the lethal and sublethal effects of UV-B. In this natural experiment, we quantified disturbance to O. pumilio habitat, …

Human Adaptation And Morphological Variation: Expanding Diversity In Anatomy Curriculum, Jordan Cass, Cooker Storm

Seaver College Research And Scholarly Achievement Symposium

Introduction: The recent upturn in our nation’s socio-political conversation has fueled interest in ensuring that college curricula is diverse and inclusive. Because human anatomy is ubiquitous across colleges, it may be a valuable avenue to purposefully incorporate topics of diversity in a way that positively impacts our socio-cultural relationships. Providing students with a scientific understanding of our visible differences may mitigate subconscious bias when we see others who have different features. Purpose: We investigated the biogeographical factors that contribute to the morphological variability of the face, hair, and body size; with the secondary aim of developing diverse and …

Checklist Of Zooplankton Of The Halda River, Chattogram, Bangladesh, Md. Safiqul Islam, M.A. Azadi, Munira Nasiruddin, Md. Tajul Islam

Journal of Bioresource Management

The River Halda is one of the important natural breeding grounds of Indian major carp (Labeo rohita, Labeo calbasu, Gibelion catla, Cirrhinus mrigala) in Bangladesh for its unique physicochemical and biological properties of water. The productivity of the Halda ecosystem mainly depends on the plankton diversity. Zooplankton directly affects the productivity of the Halda River ecosystem. Research work was conducted for the two years extending from January 2017 to December 2018 to identify the zooplankton community of the Halda River. A total of 71 species of zooplankton under 37 genera belonging to 9 groups were identified. The dominant …

Environmental And Habitat Preferences Of The Algerian Hedgehog Atelerix Algirus(Lereboullet, 1842) In El Kala National Park (North-East Algeria), Sakraoui Rym, Boukheroufa Mehdi, Dadci Walid, Abdallah Khadidjawissal, Senaoui Charafeddine, Sakraoui Feriel, Benyacoub Slim

Journal of Bioresource Management

We conducted this study to identify the preferred habitat of Atelerix algirus in the National Park of El Kala (PNEK), through the analysis of the catches rates of the species combined to an ethno zoological survey carried out among the residents. The study was conducted between January 2010 and December 2011, in five localities of the Park, different by their useful areas (forests and agricultural land) and their degree of urbanization: Raml Souk, El Aioun, Berrihane, El Kala and Bougous. We also surveyed 57 residents of Berrihane locality. Our results identified the locality of Berrihane as the preferred area of …

Stepping-Stones And Mediators Of Pandemic Expansion: A Context For Humans As Ecological Super-Spreaders, Eric P. Hoberg, Walter A. Boeger, Daniel R. Brooks, Valeria Trivellone, Salvatore J. Agosta

MANTER: Journal of Parasite Biodiversity

Humans represent ecological super-spreaders in the dissemination and introduction of pathogens. These processes, consistent with the dynamics of the Stockholm paradigm, are exemplified in the origin and globalized distributions of SARS-CoV-2 since initial recognition in central Asia during 2019 and 2020. SARS-like viruses are not widespread in mammals but appear widespread in chiropterans. Bats are isolated ecologically from most other assemblages of mammals in terrestrial systems. Humans may be the stepping-stone hosts for broad global dissemination and wider infection (given the opportunity) among diverse assemblages of mammals in which host and viral capacity are compatible. Human globalization mediated insertion in …

The Spatial Distribution Of Invasive Plant Presence, Abundance, And Impact, Evelyn M. Beaury

Doctoral Dissertations

Across the globe, native ecosystems are increasingly threatened by the spread and negative impacts of non-native, invasive plants. While many hypotheses explore what contributes to the damage caused by invasive species, few studies have tested these hypotheses at the macroscale. My dissertation addresses this knowledge gap by synthesizing thousands of vegetation surveys from ecosystems across the United States. I leverage existing, as well as explore new macroecological methods to deepen our understanding of the spatial ecology of plant invasions.

My dissertation also asks how effective management and policy has been at reducing plant invasions. The primary introduction pathway for invasive …

Ecology And Conservation Of Grey Crowned Cranes (Balearica Regulorum) In Tanzania, Bridget Amulike

Doctoral Dissertations

Grey-crowned cranes (Balearica regulorum) are listed as endangered and their population throughout Africa has declined by 50% from the period of 1985–2004. The major causes for their population loss are mainly linked to habitat loss and the illegal capture of live birds and collection of their eggs and other parts. Currently, throughout Africa, little has been done to study and protect grey crowned cranes. In this study, I incorporated local people’s knowledge, using survey questionnaires to investigate the distribution of grey crowned cranes in Arusha, Kilimanjaro, Singida, and Mbeya Region in Tanzania. I also investigated the perception and attitudes …

A Revision Of The Genus Mesobuthus Vachon, 1950, With A Description Of 14 New Species (Scorpiones: Buthidae), František Kovařík, Victor Fet, Benjamin Gantenbein, Matthew R. Graham, Ersen A. Yağmur, František Šťáhlavský, Nikita M. Poverennyi, Nizami E. Novruzov

Euscorpius

The Asian genus Mesobuthus Vachon, 1950, s. str. (Buthidae) (also known as an informal ‘M. eupeus complex’), which includes the most common scorpion species found from Turkey to China, is revised based on new collections, mainly from Central Asia, Turkey, and Iran, using both morphological and mitochondrial DNA data. Available type specimens of all species were studied; neotypes and lectotypes were designated when necessary. The type species Mesobuthus eupeus (C. L. Koch, 1839), s. str., is restricted to the Caucasus Mts. Currently, the genus includes 29 valid species. Fifteen previously described taxa are recognized as species: Mesobuthus afghanus (Pocock, …

Mesobuthus Zarudnyi Sp. N. From Azerbaijan (Scorpiones: Buthidae), Nizami E. Novruzov, František Kovařík, Victor Fet

Euscorpius

A new species Mesobuthus zarudnyi sp. n. is described from Azerbaijan, fully illustrated with color photos. We compare the new species with two other species, M. eupeus (C. L. Koch, 1839) and M. persicus (Pocock, 1899), both found also in Azerbaijan.

Characterization Of Streptomyces Nymphaeiformis Sp. Nov., And Its Taxonomic Relatedness To Other Polyhydroxybutyrate-Degrading Streptomycetes, Gary R. Hix, Muhammad S. Khan, Mikayla T. Miller, Elisha C. Napier, Allison L. O'Brien, Roger P. White, Stephen F. Baron Ph.D.

Biology Faculty Scholarship

A polyhydroxybutyrate (PHB)-degrading actinomycete, strain SFB5A^T, was identified as a species of Streptomyces based on its membrane fatty acid profile and the presence of LL-diaminopimelic acid in the cell wall. It formed sporulating mycelia on most agar media, but flat or wrinkled, moist colonies on trypticase soy agar. Spores were smooth, cylindrical, and borne on long, straight to flexuous chains. It produced a light brown diffusible pigment, but not melanin. Comparison of genomic digital DNA–DNA hybridization (dDDH) and average nucleotide identity (ANI) values indicated that strain SFB5A^T was related to Streptomyces litmocidini JCM 4394^T , Streptomyces …

Niches Of Marine Mammals In The European Arctic, K. M. Mackenzie, C. Lydersen, T. Haug, H. Routti, J. Aars, C. M. Andvik, K. Borgå, A. T. Fisk, S. Meier, M. Biuw, A. D. Lowther, U. Lindstrøm, K. M. Kovacs

Great Lakes Institute for Environmental Research Publications

The Arctic is warming rapidly, with concomitant sea ice losses and ecosystem changes. The animals most vulnerable to Arctic food web changes are long-lived and slow-growing such as marine mammals, which may not be able to adapt rapidly enough to respond to changes in their resource bases. To determine the current extent and sources of these resource bases, we examined isotopic and trophic niches for marine mammals in the European Arctic using skin carbon (δ13C) and nitrogen (δ 15N) stable isotope (SI) compositions from 10 species: blue, fin, humpback, minke, sperm and white whales, bearded and ringed seals, walruses and …

The Role Of Leaf Decomposition In Macroinvertebrate Colonization, Bethany Mabel Lian Schorr, Kevin Geedey

Independent Research Projects

Decomposition plays an important ecological role in carbon and nutrient cycling that supply food and energy resources to food webs. This study investigates the potential role that leaf decomposition of different leaf species may play in macroinvertebrate assemblages in upper Midwest streams. We hypothesized that the different decomposition rates experienced with different leaf species and in different streams would have an effect on invertebrate colonization due to the variance in nutrient availability. Due to altered fire regimes and other influences, forests are experiencing declines in fire-adapted, heliophytic species such as oaks and compositional shifts toward shade-tolerant, mesophytic species such as …

Data From Callery Pear Prairie Survey, Michaela J. Woods, Grace Dietsch, Ryan W. Mcewan

Five Rivers MetroParks Collaboration Data Archive

This dataset was curated following the examination of two prairies invaded by Callery pear, and two that were not invaded. We assessed soil nutrients and chemistry, plant cover, and proximity to different land uses to see if they impacted Callery pear abundance, presence/absence or cover.

Monitoring Extinction Risk And Threats Of The World's Fishes Based On The Sampled Red List Index, Rafael Miranda, Imanol Miqueleiz, William Darwall, Catherine Sayer, Nicholas K. Dulvy, Kent E. Carpenter, Beth Polidoro, Nadia Dewhurst-Richman, Caroline Pollock, Craig Hilton-Taylor, Robin Freeman, Ben Collen, Monika Böhm

Biological Sciences Faculty Publications

Global biodiversitytargets require us to identify species at risk of extinction and quantify status and trends of biodiversity. The Red List Index (RLI) tracks trends in the conservation status of entire species groups over time by monitoring changes in categories assigned to species. Here, we calculate this index for the world’s fishes in 2010, using a sampled approach to the RLI based on a randomly selected sample of 1,500 species, and also present RLI splits for freshwater and marine systems separately. We further compare specific traits of a worldwide fish list to our sample to assess its representativeness. Overall, 15.1% …

Morphological Changes Of The Asian Shore Crab Across Latitudes, Ainslee Mcmullin, Blaine D. Griffen

Library/Life Sciences Undergraduate Poster Competition 2022

The Asian shore crab, Hemigrapsus sanguineus , is an invasive species that has rapidly spread across the Eastern United States coastline. First observed in North America in 1988, its range currently extends from Maine to North Carolina. H. sanguineus has adapted very well to this region and has displaced several native species as the dominant crab in rocky intertidal habitats. Although the Asian shore crab’s biology and interactions with native species has been well studied, larger scale impacts (economic, potential further spread, community ecology, etc.) are under researched. We collected specimen samples of H. sanguineus throughout its entire East coast …

Reviewing The Effects Of Human-Induced Limb Damage In Crabs, Jacob B. Spencer, Blaine D. Griffen

Library/Life Sciences Undergraduate Poster Competition 2022

Limb damage in crabs comes in various forms, each with unique consequences. Brachyuran crabs shed limbs as a defensive reflex, with natural breakage occurring along a plane, otherwise known as autotomy. In addition to autotomy, crabs commonly lose limbs due to fishing practices such as declawing. In many areas, taking the limbs and releasing the crab is a common practice. The logic is that the populations won’t decline if the crab is put back. Other practices such as nicking, or cutting the main claw tendon, are used to restrict claw movement. Various effects of these fishery practices have been documented …

Introducing Xanthoria Parietina: Invasive, Naturalized, Or Opportunistic?, Mikele Baugh, Steve Leavitt

Library/Life Sciences Undergraduate Poster Competition 2022

Lichens are one of the world’s ubiquitous group of organisms. They have been documented from frigid tundras to arid deserts. While some species are known to be particularly hardy and flexible in their habitats, many species are linked to specific growing conditions. As the global climate changes, the geographical range for different growing conditions shifts. Economic trade and human travel provide new opportunities for species to access new locations that are beginning to develop habitable conditions. Xanthoria parietina has been observed in the Great Basin (a region outside of its typical coastal distribution) found in newly built horticultural landscapes. Individuals …

First Record Of The Genus Compsobuthus (Scorpiones: Buthidae) From Maharashtra, India, With Description Of A New Species, Vivek Waghe, Satpal Gangalmale, Akshay Khandekar

Euscorpius

A new species of the genus Compsobuthus Vachon, 1949 (Buthidae) belonging to the werneri group is described from two localities in Jalgaon District, Maharashtra, India. The new species can be easily distinguished from all four members of the werneri group known from India and Pakistan by combination of nonoverlapping morphological characters. Compsobuthus satpuraensis sp. n. is the first species of this genus to be reported from the state of Maharashtra and fourth to be reported from India.

Phylogenomic Discordance Suggests Polytomies Along The Backbone Of The Large Genus Solanum, Edeline Gagnon, Rebeccca Hilgenhof, Andrés Orejuela, Angela J. Mcdonnell, Gaurav Sablok, Xavier Aubriot, Leandro Giacomin, Yuri Gouvêa, Thamyris Bragionis, João Renato Stehmann, Lynn Bohs, Steven Dodsworth, Christopher T. Martine, Péter Poczai, Sandra Knapp, Tiina Särkinen

Faculty Journal Articles

Premise of the study

Evolutionary studies require solid phylogenetic frameworks, but increased volumes of phylogenomic data have revealed incongruent topologies among gene trees in many organisms both between and within genomes. Some of these incongruences indicate polytomies that may remain impossible to resolve. Here we investigate the degree of gene-tree discordance in Solanum, one of the largest flowering plant genera that includes the cultivated potato, tomato, and eggplant, as well as 24 minor crop plants.

Methods

A densely sampled species-level phylogeny of Solanum is built using unpublished and publicly available Sanger sequences comprising 60% of all accepted species (742 spp.) …