Biodiversity Commons^™

Annual Review Of The World Pheasant Association, 2011/2012, World Pheasant Association

Galliformes Specialist Group and Affiliated Societies: Reports and Other Materials

Chairman of Trustees' report, Richard Carden

Obituary: Reinhard Kruger (1938?-June 14, 2012)

Treasurer's report for the year ended April 30, 2012, Jon Riley

Achieving our charitable objectives, Philip J. K. McGowan

Galliformes Specialist Group, Peter J. Garson and Ilse Storch

Conserving Djibouti's priority land animals, Philip J.K. McGowan

Assessing the future of species on the brink, Matt Grainger

Myanmar workshop, Philip J. K. McGowan

What is the status of peafowl in Vietnam? Tommaso Savini, Vy Nguyen, and Niti Sukumal

Highlights from the European Conservation Breeding Group, Ludo Pinceel

Pipar project

Review Of Report On The “Biology And Stock Status Of Demersal Scalefish Indicator Species In The Gascoyne Coast Bioregion", Department Of Fisheries

Fisheries Occasional Publications

No abstract provided.

Microbial Co-Occurrence Relationships In The Human Microbiome, Karoline Faust, J. Fah Sathirapongsasuti, Jacques Izard, Dirk Gevers, Jeroen Raes, Curtis Huttenhower

Department of Food Science and Technology: Faculty Publications

The healthy microbiota show remarkable variability within and among individuals. In addition to external exposures, ecological relationships (both oppositional and symbiotic) between microbial inhabitants are important contributors to this variation. It is thus of interest to assess what relationships might exist among microbes and determine their underlying reasons. The initial Human Microbiome Project (HMP) cohort, comprising 239 individuals and 18 different microbial habitats, provides an unprecedented resource to detect, catalog, and analyze such relationships. Here, we applied an ensemble method based on multiple similarity measures in combination with generalized boosted linear models (GBLMs) to taxonomic marker (16S rRNA gene) profiles …

Traversing Swanton Road, 9th Ed., James A. West

Academic, Government & Associated Organizational Research Resources

Situated at the northwest end of Santa Cruz County and occupying circa 30 square miles of sharply contrasted terrain, the Scott Creek Watershed concentrates within its geomorphological boundaries, at least 10-12% of California's flora, both native and introduced. Paradoxically, the use/abuse that the watershed has sustained over the past 140+ years, has not necessarily diminished the biodiversity and perhaps parallels the naturally disruptive but biologically energizing processes (fire, flooding, landslides and erosion), which have also been historically documented for the area for +60 years. This is an early edition of an extensive document by James A. West. Please visit the …

Climate's Role In Polar Bear Past [Letters], Kurt E. Galbreath, Joseph A. Cook, Eric P. Hoberg

Harold W. Manter Laboratory of Parasitology: Faculty Publications

Striking temporal concordance between the new date for divergence of polar bears and persistent freezing of the Arctic Ocean suggests that this may be one of relatively few instances in which a specific paleoclimatological episode can be convincingly linked to a specific evolutionary event, and it provides vivid demonstration of climatic forcing as a determinant of diversification in biological systems.

Aquatic Heteroptera Of The Lake Manguao Catchment, Palawan And New Rank Of Rhagovelia Kawakamii Hoberlandti Hungerford & Matsuda 1961, Hendrik Freitag, Herbert Zettel

Biology Faculty Publications

Results of an inventory of the fauna of aquatic and semiaquatic true bugs (Insecta: Hemiptera) of small streams in a lake catchment of northern Palawan are presented. Twenty-one species were recorded. Taxonomic and ecological notes, distribution and collection sites are given for each identified taxon. Rhagovelia hoberlandti Hungerford & Matsuda 1961 is newly ranked as a subspecies of R. kawakamii (Matsumura 1913): Rhagovelia kawakamii hoberlandti Hungerford & Matsuda 1961, stat.n. Cercotmetus asiaticus Amyot & Serville 1843 is recorded for the first time from the Philippines. Endemic and few undescribed taxa are discussed. Additional environmental data of the sampled waters are …

Mapping Plant Biodiversity Hotspots At The County Scale: A New Tool For Establishing Resource Conservation Strategies, Kristie Haydu

Master's Theses

Myers first identified the world’s 25 biodiversity hotspots and pioneered innovative ideas about the usefulness of biodiversity models for establishing long-term resource conservation strategies at global scales. Since Myers, most of the subsequent studies using hotspot science for biodiversity modeling have used large spatial scales like countries, provinces or states, and other biogeoraphic regions. The California Floristic Province continues to be one of the recognized global biodiversity hotspots. Our study site, San Luis Obispo County is within this hotspot and we created a map of plant biodiversity hotspots at the county scale using GIS technology. We wanted to determine the …

Monitoring Standing Herbage Of Mid-Grass Prairie On The Fort Pierre National Grassland, South Dakota, Daniel W. Uresk

The Prairie Naturalist

Monitoring vegetation with a modified Robel pole on the Fort Pierre National Grassland was evaluated for combined shallow clay and loamy overflow ecological sites (dominated by warm-season grasses), and for clayey ecological sites (dominated by cool-season grasses). My objectives were to 1) develop a relationship between visual obstruction readings (VOR) and standing herbage, 2) provide guidelines for vegetation monitoring, and 3) evaluate vegetation monitoring during the growing season for clayey ecological sites. The relationship between visual obstruction readings and standing herbage was linear and regression coefficients were highly significant (P < 0.001) for both ecological types. Cluster analyses for shallow clay and loamy overflow ecological sites grouped the VOR and standing herbage (kg•ha-1) into 4 resource categories. Monitoring with 4 transects will provide adequate information to estimate standing herbage within 259 ha (1 section). Three resource categories (VOR + herbage) for clayey ecological sites were defined by cluster analyses. Monitoring with 4 transects was determined to provide reliable estimates of standing herbage. July validation of vegetation with the developed clayey ecological site model will provide reliable monitoring of standing herbage from July through November for this ecological site.

Germination Response Of Prairie Dropseed And Hairy Goldaster To Stratification And Temperature, Aurora R. Roemmich, Jack L. Bulter, Gary E. Larson, E. Brent Turnipseed

The Prairie Naturalist

The unique vegetation assemblage of the Black Hills in conjunction with the frequent occurrence of natural and anthropogenic disturbances emphasizes the need to use locally adapted native species in a wide variety of restoration efforts. However, a general lack of information regarding germination and propagation requirements for most native plant species has restricted their usage. A better understanding of dormancy and germination patterns for native species will increase their availability and affordability. We selected two common native species, hairy goldaster (Heterotheca villosa) and prairie dropseed (Sporobolus heterolepis), to determine their optimum germination conditions. We hand-harvested seeds during 2007–2009 for use …

Five New Records Of Ants (Hymenoptera: Formicidae) For Nebraska, Kristine T. Nemec, James C. Trager, Elizabeth Manley, Craig R. Allen

The Prairie Naturalist

Ants are ubiquitous and influential organisms in terrestrial ecosystems. About 1,000 ant species occur in North America, where they are found in nearly every habitat (Fisher and Cover 2007). Ants are critical to ecological processes and structure. Ants affect soils via tunneling activity (Baxter and Hole 1967), disperse plant seeds (Lengyel et al. 2009), prey upon a variety of insects and other invertebrates (Way and Khoo 1992, Folgarait 1998), are often effective primary consumers through their prodigious consumption of floral and especially extrafloral nectar, and honeydew (Tobin 1994), and serve as prey for invertebrates (Gotelli 1996, Gastreich 1999) and vertebrates …

Distribution And Diversity Of Ant Genera From Selected Ecoregions Across Nebraska, Jessica Jurzenski, Marc Albrecht, W. Wyatt Hoback

The Prairie Naturalist

We documented distribution and diversity of ant genera in four of the six-level III ecoregions across Nebraska. We sampled ants using bait cards, pitfall traps, and by opportunistic sampling, including direct collection and in carrion-baited pitfall traps. We identified 22 genera from five subfamilies, which were further classified into six functional groups. In common with other Great Plains states, Formica Linnaeus and Lasius Fabricius occurred most frequently in our samples, and overall ant genus-level richness was comparable to surrounding states. We compared genera similarity using Jaccard’s similarity index within and between the High Plains (western-most) and Western Corn Belt Plains …

My Manuscript Needs Revision: Now What?, Christopher N. Jacques

The Prairie Naturalist

Greetings GPNSS members! Hopefully by now you have read my previous editorial notes about the transformation of The Prairie Naturalist (Journal) during the past few years and the work the Editorial Staff continues to do to provide a quality publication venue for the Journal’s membership and prospective authors. During my tenure as Editor-in-Chief (Editor), I have had the good fortune of working with many authors and a truly dedicated Editorial Staff. Most topics for editorials come to me relatively easily, though admittedly I found myself scratching my head when thinking about a topic for this editorial. After much pensive thought, …

Book Reviews: Human Dimensions Of Ecological Restoration: Integrating Science, Nature, And Culture. Edited By Dave Egan, Evan E. Hjerpe, And Jesse Abrams., Chuck Harris

The Prairie Naturalist

The practice of ecological restoration has long been a key element in the management of ecosystems, but it has only been since the 1980s that research on resource management has specifically studied this practice and its foundations in restoration ecology. One major focus of this research has been the application of the theories and methods of the social sciences to ecological restoration activities.

Fairly recently, the application of the social sciences to resource management, in general, and to ecological restoration, in particular, has been couched in the broadest of terms. Beginning in the 1990s, this application was expressed in terms …

Comparison Of Piping Plover Foraging Habitat On Artificial And Natural Sandbars On The Missouri River, Daniel H. Catlin, Joy H. Felio, James D. Fraser

The Prairie Naturalist

The presence of food close to nesting habitat is essential for piping plover (Charadrius melodus) reproductive output. Since 2004, the U.S. Army Corps of Engineers has been engineering artificial nesting and brood-rearing habitat for piping plovers on the Missouri River. We compared arthropod abundance indices from artificial and natural sandbars as part of an evaluation of foraging habitat. The artificial sandbars had fewer and different arthropods than natural sandbars. The arthropod indices, however, need to be considered in light of total area of foraging habitat. Although there were fewer arthropods on artificial sandbars, the abundance of foraging habitat and relatively …

Evidence Of American Martens Populating The Turtle Mountains Of North Dakota, Amber J. Bagherian, Dorothy M. Fecske, Maggie D. Triska, Joseph A. Bishop, Dean J. Berezanski, Sandra K. Johnson, Robert P. Brooks, Thomas L. Serfass

The Prairie Naturalist

American martens (Martes americana) were native to northeastern North Dakota but were considered extirpated by the early 1800s. Although there is no historic evidence of martens occurring beyond the northeast, forested habitat potentially suitable for martens exists in the Turtle Mountains region of northcentral North Dakota and southwestern Manitoba. From 1989– 1991, the Turtle Mountain Trappers Association translocated 59 martens into the Canadian portion of the Turtle Mountains. During summer 2007, we used covered track-plates and/or remotely-triggered cameras placed at 123 survey sites distributed among 41 1-km2 grid cells (a GIS-generated layer imposed on electronic maps of the study region) …

Topographic Home Range Of Large Mammals: Is Planimetric Home Range Still A Viable Method?, W. David Walter, Justin W. Fischer, Teresa J. Frink, Scott E. Hygnstrom, Jonathan A. Jenks, Kurt C. Vercauteren

The Prairie Naturalist

Topography influences movement trajectories, quality of forages used, and behavioral response of large herbivores to anthropogenic disturbances, but research is lacking on the influence of terrain complexity on size of home range. Size of home range usually is based on planimetric area and therefore rarely accounts for the true surface area traversed by an animal. We conducted radiotelemetry on bighorn sheep (Ovis canadensis), Rocky Mountain elk (Cervus elaphus), mule deer (Odocoileus hemionus), and white-tailed deer (O. virginianus) equipped with VHF collars at three sites from 2002 to 2006 to document size of home range in areas that ranged from 400 …

Preserving Wildlife In San Luis Obispo City By Way Of San Luis Obispo Creek, Sydni Nicolici

Liberal Arts and Engineering Studies

The effectiveness of San Luis Obispo wildlife easements and city open space utilized to preserve species of concern is correlated to the health and maintenance of the San Luis Obispo Creek. I propose that the health of the Creek be addressed before more open space is added to the green belt surrounding the city. This bottom-up approach to preservation will ensure all steps of habitat will function as they should.

Exploring The Houtman Abrolhos Islands, Western Australia. Department Of Fisheries

Fisheries Occasional Publications

This booklet is designed to assist you in exploring and appreciating the Houtman Abrolhos Islands. It provides a general overview on the attributes of the Abrolhos that make it so unique. A place rich in ecological, historical, economic and cultural significance for Western Australia.

Apart from being an introduction to the Abrolhos, the booklet also provides background and context for the various management plans and strategies developed and implemented to sustainably manage these Islands and their surrounding waters.

Composition Of The Adult Digestive Tract Bacterial Microbiome Based On Seven Mouth Surfaces, Tonsils, Throat And Stool Samples, Nicola Segata, Susan Kinder Haake, Peter Mannon, Katherine P. Lemon, Levi Waldron, Dirk Gevers, Curtis Huttenhower, Jacques Izard

Department of Food Science and Technology: Faculty Publications

Background: To understand the relationship between our bacterial microbiome and health, it is essential to define the microbiome in the absence of disease. The digestive tract includes diverse habitats and hosts the human body’s greatest bacterial density. We describe the bacterial community composition of ten digestive tract sites from more than 200 normal adults enrolled in the Human Microbiome Project, and metagenomically determined metabolic potentials of four representative sites.

Results: The microbiota of these diverse habitats formed four groups based on similar community compositions: buccal mucosa, keratinized gingiva, hard palate; saliva, tongue, tonsils, throat; sub- and supra-gingival plaques; …

Metabolic Reconstruction For Metagenomic Data And Its Application To The Human Microbiome, Sahar Abubucker, Nicola Segata, Johannes Goll, Alyxandria M. Schubert, Jacques Izard, Brandi L. Cantarel, Beltran Rodriguez-Mueller, Jeremy Zucker, Mathangi Thiagarajan, Bernard Henrissat, Owen White, Scott T. Scott, Barbara Methé, Patrick D. Schloss, Dirk Gever, Makedonka Mitreva, Curtis Huttenhower

Department of Food Science and Technology: Faculty Publications

Microbial communities carry out the majority of the biochemical activity on the planet, and they play integral roles in processes including metabolism and immune homeostasis in the human microbiome. Shotgun sequencing of such communities’ metagenomes provides information complementary to organismal abundances from taxonomic markers, but the resulting data typically comprise short reads from hundreds of different organisms and are at best challenging to assemble comparably to single-organism genomes. Here, we describe an alternative approach to infer the functional and metabolic potential of a microbial community metagenome. We determined the gene families and pathways present or absent within a community, as …