Biodiversity Commons^™

Biotic Interchange Has Structured Western Hemisphere Mammal Communities, Danielle Fraser, S. Kathleen Lyons

School of Biological Sciences: Faculty Publications

Aim.— Many hypotheses posit that species-rich tropical communities are dominated by speciesspecies interactions, apparent as competitive exclusion or character displacement, whereas species-poor temperate communities are dominated by species-environment interactions. Recent studies demonstrate a strong influence of macroevolutionary and biogeographic factors. We simultaneously test for the effects of species interactions, climate, and biotic interchange on Western Hemisphere mammal communities using a phylogenetic and functional diversity approach.

Location.— Western Hemisphere.

Time period.— Modern

Major taxa studied.— Mammalia

Methods.— Using Western Hemisphere mammal distributional and body mass data, we calculate body mass dispersion, phylogenetic diversity (Net Relatedness Index), and assemblage-averaged rates of co-occurrence …

A Method For Measuring The Attachment Strength Of The Cestode Hymenolepis Diminuta To The Rat Intestine, Wanchuan Xie, Gábor R. Rácz, Benjamin S. Terry, Scott Lyell Gardner

Scott L. Gardner Publications

A unique adaptation of many internal parasites of mammals is their ability to stay in the intestine for extended periods of time and resist the normal peristaltic movements and forces that push and expel material. To better understand parasite adhesion behavior and replicate their attachment method in medical devices, an experiment was designed and performed using the rat tapeworm, Hymenolepis diminuta. The experiment employed a tensile test machine and a digital scale and was designed to calculate the attachment strength of the scolex to the mucosa through the change of the value of the digital scale during the tensile …

Are Weevils Picky Eaters? Community Structure And Host Specificity Of Neotropical Saproxylic Beetles (Coleoptera: Curculionidae), Jhunior A. Morillo

Dissertations and Theses

Abstract Primary saproxylic beetles play a major role in forest nutrient cycling and making deadwood accessible to other decomposers. Understanding beetle host preferences and patterns of community assembly is critical for their conservation, and for predicting which species might become invasive. This project aims to investigate the ecological and host specificity, as well as the community composition of curculionids in a mosaic of old-growth (OG) and secondary forest on the Osa Peninsula, Costa Rica. The subfamily Scolytinae was expected to be the most species-rich and abundant. Ambrosia beetles were expected to have more generalist species than other curculionids. Old growth …

The Hidden History Of Humming Frogs, Rafael O. De Sá

Biology Faculty Publications

In the depths of Brazil’s Atlantic Forest, researchers are battling to identify species before they are lost for good. Dr Rafael O de Sá, Professor of Biology at the University of Richmond, Virginia, USA, specialises in a group known as the ‘narrow-mouthed frogs’ and has already found four species new to science.

Galliformes Specialist Group Annual Report 2016-2017, John P. Carroll, Simon D. Dowell

Galliformes Specialist Group and Affiliated Societies: Reports and Other Materials

Annual report of the IUCN SSC Galliformes Specialist Group, 2017.

Guidelines For Successful Gamebird And Songbird Feeding, C. Sánchez García, Francis Buner

Galliformes Specialist Group and Affiliated Societies: Reports and Other Materials

The key points of this research are:

• We studied the use of 259 feeders by wildlife using camera traps during early and late winter in 2012 and 2013, taking over 160,000 photographs.
• We worked on three farms in southern England where pheasants, grey and red-legged partridges were present and feeding was part of the existing game management programme.
• We used a feeder model consisting of a spiral feed dispenser attached to the bottom of a drum, suspended within a cylindrical iron armature clad with wire sheep netting.

Quail 8: Proceedings Of The Eighth National Quail Symposium (July 26-28, 2017 : Knoxville, Tennessee), Thomas V. Dailey, Roger D. Applegate

Galliformes Specialist Group and Affiliated Societies: Conference Proceedings

In memoriam: Robert "Bob" J. Robel, 1933-2013

PLENARY

Translocation as a population restoration technique for northern bobwhites: A review and synthesis, James A. Martin, Roger D. Applegate, Thomas V. Dailey, Michelle Downey, Beth Emmerich, Fidel Hernández, Mark M. McConnell, Kelly S. Reyna, Dale Rollins, Rebekah E. Ruzicka, and Theron M. Terhune II

A focused habitat approach for northern bobwhite restoration in Kentucky, John J. Morgan, John M. Yeiser, Danna L. Baxley, Gary Sprandel, Ben A. Robinson, and Keith Wethington

Progress of the National Bobwhite Conservation Initiative, Donald F. McKenzie, John J. Morgan, and Thomas V. Dailey

The initial stages of …

A Comparative Analysis Of Geometric Morphometrics Across Two Pseudemys Turtle Species In East Central Virginia, Kristin C. Dillard

Theses and Dissertations

The phylogeny of the turtle genus Pseudemys is poorly understood. In Virginia, many turtles have been found with indicator traits of both eastern river cooters (Pseudemys concinna concinna) and northern red bellied cooters (Pseudemys rubriventris). This study explores morphological evidence for hybridization between the two species across three riverine sites in east central Virginia.

Museum voucher groups for each species were analyzed for relative shell height and plastron length. The shape of the plastral scutes and upper jaw were analyzed using landmark-based morphometric software. These metrics were compared with measurements taken from 188 field-caught Pseudemys specimens. …

Soil Erosion Risk Factors And The Impacts Of Diversification On Organic Strawberry Farms Along California’S Central Coast, Kay Sterner

Pomona Senior Theses

Soil erosion is a major issue that threatens to undermine our current system of agriculture. Due to the fact that this system is in turn the number one cause of erosion, agricultural practices in the United States need to be rethought. This study explores how traditional ideas of erosion risks are related to observed erosion on organic strawberry farms along California’s Central Coast. In addition, diversified farming systems are addressed as a possible solution for the current unsustainability of our farming practices. The data from this research suggest that diversity of crops on farms could be linked to less soil …

Using Geospatial Analysis For High School Environmental Science Education: A Case Study Of The Jane Goodall Institute's Community-Centered Conservation Approach, Madison G. Vorva

Pomona Senior Theses

Given my experiences as a young conservation advocate, I saw a need to teach students the importance of interconnectedness, cultural awareness and systems-thinking skills through a spatial lens. I believe these skills are required for holistic, equitable and sustainable conservation decision-making in local and international contexts. This thesis uses geospatial tools to teach conservation ecology vocabulary and concepts from high school environmental science curriculum in two online resources. The purpose of my lesson plan is to show students how conservationists address complex conservation and land-use challenges using the Jane Goodall Institute’s community-centered conservation approach as a case-study. My hope is …

Distribution And Habitat Use Of The Golden Crab Chaceon Fenneri Off Eastern Florida Based On In Situ Submersible And Rov Observations And Potential For Impacts To Deep Water Coral/Sponge Habitat, John K. Reed, Stephanie Farrington, Charles Messing, Andrew David

Gulf and Caribbean Research

This study documents the distribution and habitat preferences of the golden crab, a commercially fished species, in relation to deep-sea coral/sponge ecosystems (DSCEs) at 200-900 m depths off eastern Florida. A total of 386 h of videotapes from 94 submersible and remotely operated vehicle (ROV) dives from 1999 to 2009, covering a total distance of 376 km, were reviewed and characterized for habitat type and presence of crabs. The DSCEs surveyed included Lophelia coral mounds, Miami Terrace, Pourtalès Terrace, and Tortugas Valleys. Video transect data also included environmental surveys of proposed deep-water routes for Liquid Natural Gas (LNG) pipelines, LNG …

The Effects Of Thermal Stress On Fluorescent Protein Expression In An Indo-Pacific Scleractinian Coral Species, Acropora Tenuis, Anna Knochel

Independent Study Project (ISP) Collection

The scleractinian coral species that so heavily define tropical coral reefs are increasingly threatened by anthropogenic global warming. Rising sea surface temperatures in combination with light stress causes the photosynthetic breakdown of the coral’s algal symbiont, Symbiodinium. Corals have developed a number of physiological responses to handle acute stressors, such as the production of ultraviolet-protecting amino acids, heat shock proteins, the ability to shift symbionts, and the production of fluorescent proteins. The latter has been thought to play a photoprotective role in the coral holobiont, and studies have shown evidence that corals orient these pigments to divert harmful light away …

The Effects Of Disturbance And Species Specific Interactions On Diversity In An Agent Based Forest Simulation, Matthew E. Mills

Theses and Dissertations

In ecology literature, there is much data which suggests that conspecific negative density dependence (CNDD) and abiotic disturbances increase biodiversity in forests. This thesis elucidates the notion that not only do these two forces increase diversity, but they may also interact with one another in order to achieve higher levels of biodiversity. Abiotic disturbances, like fires and hurricanes, can indirectly impact conspecific effects because when these forces remove individuals from the landscape, the role of the conspecific effects will change. The interaction of these two factors in biodiversity are explored in an agent based forest simulation through a resource surface. …

The Bee Fauna Of The Horse Mountain And Grouse Mountain Region, Humboldt County, California, Carrie Lopez

Cal Poly Humboldt theses and projects

Recent concerns about the ecological well-being of bee communities in California and elsewhere have increased the need for monitoring programs and studies that evaluate the impact of habitat loss and alteration on bee diversity and abundance. Such studies depend critically on the expertise of people trained in taxonomy, but their numbers have declined in recent years. My primary goal was to gain a comprehensive first-hand experience with bee identification by documenting the fauna of a previously unstudied area in the mountains of northwestern California and by writing an identification key, intended for dedicated non-specialists, to the area’s 35 species of …

Antifungal Genome Mining And Genetics In Filamentous Actinomycete Bacteria Isolated From Local Soils, Jacob Alex, Kevin Lou, Bilal Makhdoom

Undergraduate Research Symposium Posters

Actinomycetes are gram positive, filamentous bacteria that produce useful antibiotics, antitumor agents, and agricultural products. A series of enrichments were undertaken to isolate actinomycetes from local soils, varying enrichment media, antibacterials, and soil treatments (including heat and CaCO3). Isolates were characterized by 16S rDNA sequencing, phenotypic and morphological observations, and antibiotic production. The genetic tractability of select isolates was analyzed using a panel of integrating vectors derived from ɸC31, ɸBT1, and OzzyJ phage using intergeneric conjugation. Further, a semi-degenerate multiplex PCR assay to detect ɸBT1 genomic integrants was designed and tested for the first time. Finally, PCR screens were used …

Sample Collection And Dna Extraction Methods For Environmental Dna Metabarcoding In Headwater Streams, Michael Triston Mullins

Online Theses and Dissertations

DNA is found to be free and ubiquitous in the environment where it is no longer associated with the source organism, and is also known as environmental-DNA (eDNA). Methods optimized for specific environments may be able supplement insight to local taxa richness. With the advent of high throughput sequencing and the proliferation of sequence data in public repositories, insights to the biodiversity of communities at the molecular level have been possible. Thus, this study compared commonly used DNA capture (water precipitation and filtration) and extraction (MoBio's PowerWater, Qiagen's DNeasy Blood and Tissue Kit, and a CTAB protocol) methods in their …

Recent Diatoms Reported From The Central United States: Register Of Taxa And Synonyms, Mark E. Eberle

Biological Sciences Faculty Publications

This list of diatoms summarizes information for more than 1000 taxa and synonyms reported in published accounts of collections made in the central United States, principally within the states of Kansas, Nebraska, and Oklahoma, but also including adjacent areas in eastern Colorado and western Missouri. The objective was to provide people working on diatom projects in this region with a base reference to help them assess the results of their research. Records from Master’s theses and references focused on fossil diatoms were not incorporated into this list. Specimens were not examined, so taxa presented here are those reported in the …

Flight Of The Freshwater Fish, Michael H. Wilson

Capstones

Michael H. Wilson

Capstone Abstract

December 27, 2016

Flight of the Freshwater Fish

The Hudson River provides for millions of people as a path for commercial and private transportation, a source of food and energy, and perhaps most importantly for many living in the tri-state area as a destination for recreation and relaxation. The most overlooked feature of the river is how the wildlife shows clear signs of a changing climate and rapid environmental response to the impacts of global warming on the river.

Entire populations of fish species in the lower Hudson have been forced to leave the river …

Salvinia Molesta: An Assessment Of The Effects And Methods Of Eradication, Arti Lal

Master's Projects and Capstones

Salvinia molesta is an invasive aquatic fern. It is now the second worse aquatic invader in the world. Since the 1930s, it has invaded most tropical and some temperate countries. S. molesta plants grow vegetatively and can increase in size rapidly. S. molesta can form thick mats of up to 1-meter-thick. There are a number of ways these thick mats negatively affect the environment: 1) reduce light to benthic organisms, 2) reduce oxygen in the water column for other organisms, 3) accumulate as organic matter at the bottom of the water column, 4) decrease nutrients for other organisms, and 5) …

Review Of Northwestern African Buthacus, With Description Of Buthacus Stockmanni Sp. N. From Morocco And Western Sahara (Scorpiones, Buthidae), František Kovařík, Graeme Lowe, František Šťáhlavský

Euscorpius

Northwestern African Buthacus species are revised. Buthacus stockmanni sp. n. from Morocco and Western Sahara is described and fully complemented with color photos of live and preserved specimens, as well as their habitat. The hemispermatophore of B. stockmanni sp. n. is illustrated and described. In addition to morphology and hemi-spermatophores, we also describe the karyotypes of B. stockmanni sp. n. (2n=20). B. stockmanni sp. n. is compared with B. occidentalis Vachon, 1953 and B. ziegleri Lourenço, 2000. Both these species are differentiated from B. stockmanni sp. n. geographically and morphologically. The male of B. stockmanni sp. n. has fingers of …