Systems Biology Commons^™

Genetically Distinct Behavioral Modules Underlie Natural Variation In Thermal Performance Curves, Gregory W. Stegeman, Scott E. Baird, William S. Ryu, Asher D. Cutter

Biological Sciences Faculty Publications

Thermal reaction norms pervade organismal traits as stereotyped responses to temperature, a fundamental environmental input into sensory and physiological systems. Locomotory behavior represents an especially plastic read-out of animal response, with its dynamic dependence on environmental stimuli presenting a challenge for analysis and for understanding the genomic architecture of heritable variation. Here we characterize behavioral reaction norms as thermal performance curves for the nematode Caenorhabditis briggsae, using a collection of 23 wild isolate genotypes and 153 recombinant inbred lines to quantify the extent of genetic and plastic variation in locomotory behavior to temperature changes. By reducing the dimensionality of the …

Review Of A Field Guide To The Natural World Of The Twin Cities By John J. Moriarty, Photography By Siah L. St. Clair, Douglas H. Johnson, Bonnie Sample

The Prairie Naturalist

A Field Guide to the Natural World of the Twin Cities has two foci: natural areas in the Twin Cities of Minnesota and the species that live in each. The geographical scope is the seven counties that envelop Minneapolis and Saint Paul. The author describes nine major habitat types that can be found there: prairie, savanna, big woods, oak woods, wetlands (marshes and swamps), fens and bogs, lakes, rivers, and urban and suburban. It is useful to know that “big woods” are not just woods that are large in extent, but woodlands that occur in Minnesota and western Wisconsin dominated …

Factors Affecting White Bass Abundance In Two Missouri River Reservoirs, William J. Radigan, Mark J. Fincel

The Prairie Naturalist

Annual angler harvest of white bass (Morone chrysops) increased from 1985–2005 in Lake Oahe and Lake Sharpe, two mainstem Missouri River reservoirs in South Dakota. In 2006, harvest rates dropped appreciably in both reservoirs and remained low through 2015. It is hypothesized that a confirmed 2005 columnaris disease outbreak led to reduced annual angler harvest of white bass from both reservoirs. Mean annual angler harvest prior to the outbreak (1985–2005) in Lake Oahe decreased 65% and in Lake Sharpe decreased 57% post outbreak (2006–2015). To assess potential causes of sustained decreased adult white bass abundance in the reservoirs, …

Suitability Of Single-Pass Backpack Electrofishing To Estimate Fish Abundance And Describe Assemblage Structure In Prairie Streams, Morgan J. Kauth, David A. Schumann, Katie N.B. Graeb, William Wyatt Hoback

The Prairie Naturalist

Electrofishing is commonly used by fisheries professionals to assess fish assemblage structure and species abundance in streams. Accurate estimates of fish abundance and, consequently assemblage metrics, are typically generated with mark-recapture or maximum-likelihood depletion techniques, but doing so requires considerable sampling effort. Less intensive sampling approaches may be beneficial to fisheries managers, particularly in cases where frequent sampling of many streams is preferred. We used regression and Spearman rank-order correlation analyses to compare species catch rates and the assemblage metrics generated from single-pass electrofishing samples with multiple-pass depletion abundance estimates in Nebraska streams. We examined the influence of instream habitat …

The Prairie Naturalist, Volume 51, No. 1

The Prairie Naturalist

1 EDITOR’S NOTE

RESEARCH ARTICLES

3 Factors Affecting White Bass Abundance in Two Missouri River Reservoirs, William J. Radigan and Mark J. Fincel

17 Suitability of single-pass backpack electrofishing to estimate fish abundance and describe assemblage structure in prairie streams, Morgan J. Kauth, David A. Schumann, Katie N. B. Graeb, and W. Wyatt Hoback

NOTES

25 Channel Catfish Reproductive Traits in the Lower Platte River, Nebraska, USA - Mackenzie Zwiener, Jonathan Spurgeon, & Mark Pegg

30 Quantifying Signpost Usage By Captive Male White-Tailed Deer - Cassie L. Auxt, Eric S. Michel, and Jonathan A. Jenks.

33 Incidental Captures of Plains …

Incidental Captures Of Plains Spotted Skunks In Central South Dakota, Samantha Fino, Joshua D. Stafford, Aaron T. Pearse, Jonathan A. Jenks

The Prairie Naturalist

The plains spotted skunk (Spilogale putorius interrupta) had a historically broad distribution in the central United States, extending from the Mississippi River west to the Rocky Mountains. This subspecies of the eastern spotted skunk (S. putorius) has experienced population declines in recent decades possibly due to habitat loss and reduction of prey through conversion of grasslands and forests to croplands, as well as reductions in abandoned buildings, fence rows, creek bottoms, and wood piles throughout the region (Crabb 1948, Kaplan and Mead 1991, Gompper and Hackett 2005, Sasse 2017). Woody debris provides access to prey, and …

Channel Catfish Reproductive Traits In The Lower Platte River, Nebraska, Usa, Mackenzie Zwiener, Jonathan J. Spurgeon, Mark Pegg

The Prairie Naturalist

Reproductive traits including fecundity, egg diameter, and condition of freshwater fishes influence offspring survival and abundance and may provide insight regarding timing of reproduction (Winemiller and Rose 1992, Johnston and Leggett 2002). Fish size (i.e., length or weight) may influence the number of eggs produced by an individual female (i.e., fecundity; Michaletz 1998). Larger individuals may, thus, disproportionately contribute to year-classes through increased fecundity if egg and larval survival is similar or greater than those from smaller reproductive females (Gwinn et al. 2015). Likewise, maternal fish size may influence egg diameter and offspring survival, whereby larger egg diameters are associated …

Review Of Gulls Simplified: A Comparative Approach To Identification By Pete Dunne And Kevin T. Karlson, Garrett J. Macdonald

The Prairie Naturalist

The title of Pete Dunne and Kevin Karlson’s new book, Gulls Simplified, may seem like an oxymoron to many birders. Gulls are, after all, one of the most vexing groups of North American birds due to their myriad identification challenges, and many seasoned birders simply “don’t do gulls.” Indeed, Dunne, in the first line of the Introduction (page 13), writes, “Ask any bird-watcher to name the bird group that is most intimidating, and to a man, woman, and tour leader they often shout: GULLS!” The genesis of the book, and the authors’ approach to identification within, arises from the notion …

Do Metabolic Networks Follow A Power Law? A Psamm Analysis, Ryan Geib, Lubos Thoma, Ying Zhang

Senior Honors Projects

Inspired by the landmark paper “Emergence of Scaling in Random Networks” by Barabási and Albert, the field of network science has focused heavily on the power law distribution in recent years. This distribution has been used to model everything from the popularity of sites on the World Wide Web to the number of citations received on a scientific paper. The feature of this distribution is highlighted by the fact that many nodes (websites or papers) have few connections (internet links or citations) while few “hubs” are connected to many nodes. These properties lead to two very important observed effects: the …

Review Of Birds Of Prey Of The West: A Field Guide, By Brian K. Wheeler, Daniel Casey

The Prairie Naturalist

Birds of prey epitomize much of what attracts us to birding. Many are large and easy to observe, particularly in open landscapes. Their predatory nature and behavior give them an added aura of wildness; their migrations can be spectacular. And even veteran birders should enjoy the challenge of identifying the myriad of plumage variations shown by different ages, sexes, subspecies, and color morphs. With his newest effort, Birds of Prey of the West, Brian Wheeler has compiled a comprehensive and enhanced field guide with illustrations that stunningly capture that variation, combined with enough additional context to make it a valuable …

Review Of Carnivores Of The World, Second Edition, By Luke Hunter, Shannon M. Barber-Meyer

The Prairie Naturalist

Cracking open this fully revised field guide invites a new appreciation for the diversity of carnivores (members of the order Carnivora) in the world. Dig a little deeper and you’ll uncover just how little we know about so many of them. This second edition of the Carnivores of the World features 250 mammalian species—from a species so tiny it can squeeze through a wedding ring to one weighing thousands of times more, the polar bear (Ursus maritimus). Each detailed species account includes an illustration of the species (and sometimes varying forms or subspecies), information on morphological and identifying features, distribution …

Screening For Neurotoxic Potential Of 15 Flame Retardants Using Freshwater Planarians, S. Zhang, Danielle Ireland, N. S. Sipes, M. Behl, Eva-Maria S. Collins

Biology Faculty Works

Asexual freshwater planarians are an attractive invertebrate model for high-throughput neurotoxicity screening, because they possess multiple quantifiable behaviors to assess distinct neuronal functions. Planarians uniquely allow direct comparisons between developing and adult animals to distinguish developmentally selective effects from general neurotoxicity. In this study, we used our automated planarian screening platform to compare the neurotoxicity of 15 flame retardants (FRs), consisting of representative phased-out brominated (BFRs) and replacement organophosphorus FRs (OPFRs). OPFRs have emerged as a proposed safer alternative to BFRs; however, limited information is available on their health effects. We found 11 of the 15 FRs (3/6 BFRs, 7/8 …

Co2 Flux And C Balance Due To The Replacement Of Bare Soil With Agro-Ecological Service Crops In Mediterranean Environment, Emanuele Radicetti, O. Adewale Osipitan, Ali Reza Safahani Langeroodi, Sara Marinari, Roberto Mancinelli

Haskell Agricultural Laboratory (Northeast Research and Extension Center)

Intensive agriculture practices often results in decomposition of organic matter, thus causing soil CO₂ emissions. Agro-ecological service crop could be profitably cultivated to improve soil characteristics and reduce CO₂ emissions under Mediterranean environment. Two-year field trials were conducted in central Italy. The treatments were three agro-ecological service crops (hairy vetch, oat, and oilseed rape) and a no-service cover. Plant development, soil characteristics, and CO₂ emissions were measured. Oat and oilseed rape showed a rapid growth, while hairy vetch started to grow rapidly only after the cold period. Soil CO₂ emissions trend was similar among the agro-ecological …

Functional Feeding Groups Of Aquatic Macroinvertebrates On Natural And Artificial Leaves In Forested Stream Habitats In The Sebago Lake Land Reserve, Sam H. Matey, Kala Freytag Wistar

Thinking Matters Symposium Archive

We investigated preferential insect colonization of natural versus artificial leaves in forested streams to determine the impact of invertebrate-substrate associations on macroinvertebrate community composition and ecosystem nutrient cycling. We created 10 onion bags filled with natural maple leaves and 10 filled with artificial maple leaves, and placed 5 of each in two forested streams, one larger and one smaller, in the Sebago Lake Land Reserve in Standish, Maine. We identified the aquatic macroinvertebrates found on these samples after approximately one month to order-level and used Maine DEP biomonitoring data and functional feeding group taxonomies to classify macroinvertebrates by functional feeding …

Camera Trap Study Of The Mammal Communities Across An Urbanization Gradient, Caleb Durbin, Christine Brodsky

Posters

Urbanization impacts mammal communities due to habitat removal, resource abundance distribution, and the introduction of exotic species. Other studies have found that wildlife species richness is greatest at intermediate urbanization, while abundance is greatest in cities. This study was done to explore the mammal community across an urban to rural gradient in Pittsburg. Using motion-sensor camera traps, we documented small mammal pres­ence for 24 hours a day, finding patterns in mammal abundance, species richness, and community composition. Our hypothesis was that we will observe trends in mammal communities similar to other cities. Over six weeks, we placed two cameras in …

Student-Faculty Collaborative Research Grant Report, Megan Bestwick

Post-Grant Reports

Mitochondria are essential organelles in most eukaryotic cells because of their role in metabolism and the production of ATP by the oxidative phosphorylation (OXPHOS) pathway, as well as other key cellular processes. Metal cofactors, such as copper (Cu) and iron (Fe), are incorporated into OXPHOS protein complexes of yeast located within the inner membrane of the mitochondria. Misincorporation or modulation of these available metals in mitochondrial enzymes leads to the production of reactive oxygen species (ROS). ROS are reactive molecules containing oxygen such as peroxides, superoxide, and hydroxyl radicals. Yeast are a good model for studying aging and the effect …

Ecological Response Of Phytoplankton To The Oil Spills In The Oceans, Danling Tang, Jing Sun, Li Zhou, Sufen Wang, Ramesh P. Singh, Gang Pan

Mathematics, Physics, and Computer Science Faculty Articles and Research

Oil spills in oceans have substantial influence on marine ecosystems. This study investigates 21 oil spills in the world. Analyzing Chlorophyll-a (Chl-a) from Moderate Resolution Imaging Spectroradiomerer (MODIS) data after Penglai oil spills on 4 June 2011, found a bloom with peak value of Chl-a (13.66 mg m⁻³) spread over an area of 800 km² during 18–25 June 2011, and a pronounced increase in the monthly Chl-a concentration (6.40 mg m⁻³) on June 2012 in the Bohai Sea. Out of the 21 oil spills, 14 blooms were observed, while 11 …

South Dakota Aquatic Invertebrate Collection And Database, Ashlee Nilson, Nels H. Troelstrup Jr.

Oak Lake Field Station 30th Anniversary Retreat Presentations

No abstract provided.

Assessing The Prevalence Of Multidrug Resistant Salmonella Enterica From Stream Sediment And Poultry Litter In The Shenandoah Valley Of Virginia, Noah Greenman

Masters Theses, 2010-2019

Multidrug resistant Salmonella enterica present in stream sediment and poultry litter represent a critical health concern. A small number of S. enterica serotypes are responsible for most lab-confirmed infections in the US each year. To assess the prevalence of these significant strains, we isolated 88 S. enterica from stream sediment and poultry litter. Sequence data for all isolates were generated using an Illumina® sequencing platform, with long-reads for some isolates from the Oxford Nanopore MinION™ used in a hybrid genome assembly approach. Isolates were typed according to their serotype and multi-locus sequence type using SeqSero/SISTR and Enterobase respectively. Antibiotic resistance …

Determination Of Optimal Parameter Estimates For Medical Interventions In Human Metabolism And Inflammation, Marcella Torres

Theses and Dissertations

In this work we have developed three ordinary differential equation models of biological systems: body mass change in response to exercise, immune system response to a general inflammatory stimulus, and the immune system response in atherosclerosis. The purpose of developing such computational tools is to test hypotheses about the underlying biological processes that drive system outcomes as well as possible real medical interventions. Therefore, we focus our analysis on understanding key interactions between model parameters and outcomes to deepen our understanding of these complex processes as a means to developing effective treatments in obesity, sarcopenia, and inflammatory diseases.

We develop …