Marine Biology Commons^™

Accumulation Of Persistent Organic Pollutants In Marine Mammals: A Case Study On Cetaceans, Pinnipeds, And Sirenians, Alydia Moorhead

All HCAS Student Capstones, Theses, and Dissertations

Persistent organic pollutants (POPs) are lipophilic semi-volatile organic chemicals that present a range of challenges to marine biota, specifically marine mammals that often occupy a high trophic position in the food web. POPs have become a global problem since they have been shown to cause immunologic, teratogenic, carcinogenic, neurological, and reproductive complications in living organisms due to their resistance to biodegradation and their lipophilic nature. Marine mammals can accumulate these toxic substances through direct ingestion, trophic transfer, adsorption, and maternal offloading. They are susceptible to both bioaccumulation and biomagnification of POPs. Accumulation of POPs is affected by many variables, including …

A Spatial Assessment Of Impacts To The Flats Fishery By Recreational Boating In The Florida Keys National Marine Sanctuary, Kristin Anderson

All HCAS Student Capstones, Theses, and Dissertations

The recreational flats fishery in the Florida Keys is a significant component of the marine resource-based economy, exceeding $465 million (USD) in annual economic impact. Permit (Trachinotus falcatus), bonefish (Albula vulpes), and tarpon (Megalops atlanticus) are the three main species targeted by flat fishers. Those participating in this fishery generally practice catch-and-release angling therefore, the fishery is considered a more sustainable marine use compared to more traditional commercial fisheries. However, with population and tourism rising in South Florida, the fishery is increasingly threatened by habitat degradation and user conflicts. Ongoing revisions to the Florida …

Population Genomic Dynamics Of Mesopelagic Lanternfishes Diaphus Dumerilii, Lepidophanes Guentheri, And Ceratoscopelus Warmingii (Family: Myctophidae) In The Gulf Of Mexico, Andrea Bernard, Kimberly A. Finnegan, Tracey Sutton, Ron Eytan, Max Weber, Mahmood Shivji

Marine & Environmental Sciences Faculty Articles

Assessing the impacts of the Deepwater Horizon oil spill (DWHOS) on deep-sea fish assemblages of the Gulf of Mexico (GOM) has been hindered by an absence of baseline (pre-spill) data concerning the population genetic dynamics of these fishes. The lanternfishes (Myctophidae) are a speciose, yet understudied, taxonomic group, that comprise a significant portion of the global deep-sea biomass, making them integral members of meso- and bathy-pelagic food webs. Herein, we used a genomic approach (double digest restriction site associated DNA sequencing) to investigate the temporal genetic dynamics of three species of lanternfishes within the northern GOM in the region of …

Assemblage Composition And Vertical Distributions Of Deep-Sea Anglerfishes (Suborder: Ceratioidei) Of The Northern Gulf Of Mexico, Kimberly S. Schmutz

All HCAS Student Capstones, Theses, and Dissertations

The bathypelagic zone, despite being the largest cumulative ecosystem on the planet, represents the largest data gap in biological oceanography. In a deep environment with no solar light and pressures so high that survival is impossible for most marine organisms, some species have been able to adapt and overcome these challenges to radiate into diverse and successful taxa. Among the most notable of these successful taxa are the deep-sea anglerfishes (Lophiiformes: Ceratioidei). Ceratioid anglerfishes possess unique adaptations such as a symbiotic bioluminescent lure (females) and extreme dwarfism (males) that make them a particularly interesting group to study. Despite this research …

The Effects Of Increasing Ocean Temperatures On The Survivorship Of A Subtropical Population Of The Sea Urchin Arbacia Punctulata, Rhianna Clemons

Undergraduate Theses

Most sea urchin species have critical ecological roles in their ecosystems, such as keystone grazers. There is an increasing need to understand the impacts of rising temperatures on species that are vital to the health of their environments. Studies have shown that increasing temperatures may significantly negatively affect several important biological processes including reproduction, development, and excretion in many species including sea urchins. However, very little is known about the sea urchin species Arbacia punctulata. In this study, individuals were exposed to 21˚C (control, n = 12) and 27˚C (experimental, n = 12) for seven days, and survivorship was …

Trophic Ecology Of A Dominant Mesopredatory Fish Family (Alepisauridae) In The Western North Atlantic Revealed By Stomach Content And Stable Isotope Analysis, Ellyn Willse

All HCAS Student Capstones, Theses, and Dissertations

The mesopelagic zone of the ocean is gaining increased notice due to its potential for commercial value and the lack of knowledge of its ecosystems. Lancetfishes, Alepisaurus spp., are large mesopelagic predators and common bycatch species in commercial fishing operations that potentially play a role in connecting epipelagic and mesopelagic waters and may be a source of carbon from near the surface to the mesopelagic. While little is known about the behavior and biology of Lancetfishes, they share many food sources, and are themselves a food source for important commercial fisheries species such as tuna and swordfish. This study examines …

Baseline Health And Nutritional Parameters Of Wild Sand Tigers Carcharias Taurus Sampled In Delaware Bay, Lisa A. Hoopes, Tonya M. Clauss, Bradley M. Wetherbee, Dewayne A. Fox

Marine & Environmental Sciences Faculty Articles

Species-specific hematological reference values are essential for diagnosis and treatment of disease and maintaining overall health of animals. This information is lacking for many species of elasmobranchs maintained in zoos and aquaria, thus reducing the effectiveness of care for these animals. Descriptive statistics and reference intervals were calculated for hematocrit and complete blood cell counts, biochemistry and protein electrophoresis parameters, trace minerals, vitamins, heavy metals, reproductive hormones, and fatty acids in the blood of 153 wild Sand Tigers Carcharias taurus of both sexes and a range of sizes caught in Delaware Bay (Delaware, USA). Mean hematocrit, total white blood cell …

Age And Growth Of Blackfin Tuna (Thunnus Atlanticus) In The Gulf Of Mexico, Elsa M. Gutierrez

LSU Master's Theses

Tunas are highly migratory species that are ecologically and economically important components of oceanic ecosystems worldwide. Unfortunately, life history information for the smallest true tuna (genus: Thunnus), blackfin tuna Thunnus atlanticus, is scarce despite the fact that it is the most abundant tuna found throughout much of the western Atlantic. In this study an otolith-based aging approach was used to evaluate age and growth relationships, examine sexual dimorphism in growth, and derive mortality estimates for blackfin tuna in the Gulf of Mexico. Age and growth relationships were evaluated using two models commonly applied to age-at-length data for tunas: the …

Please Keep Plastics Out Of My Lagoon!, Linda Walters

CEELAB Children's Books

Everyone is talking about plastic pollution. In this book for young audiences, we provide information on plastic pollution, including microplastics. We describe some of the many animals found in our favorite estuary, the Indian River Lagoon, that are impacted by plastics. This book asks young readers to pick the items they want to see in their lagoon, "This animal friend or that harmful piece of plastic?"

A Nematode Community-Based Integrated Productivity Efficiency (Ipe) Model That Identifies Sustainable Soil Health Outcomes: A Case Of Compost Application In Carrot Production, A. Habteweld, A. Kravchencko, Parwinder Grewal, H. Melakeberhan

School of Earth, Environmental, & Marine Sciences Faculty Publications

Percent soil organic matter (SOM), pH and crop yield are among the biophysicochemical process-driven soil health indicators (SHIs). However, identifying sustainable soil health conditions using these SHIs is limited due to the lack of Integrated Productivity Efficiency (IPE) models. We define IPE as a concept that identifies best-to-worst-case soil health outcomes by assessing the effect of agronomic practices on weighted abundance of functional guilds (WAFG) of beneficial soil organisms and SHIs simultaneously. Expressing WAFG of all beneficial nematodes (x-axis) and SHIs (y-axis) as a percent of untreated control and regression of x and y reveals four quadrants describing worst-to-best-case outcomes …

Pre-Growth Environmental Stresses Affect Foodborne Pathogens Response To Subsequent Chemical Treatments, Amandeep Singh, Veerachandra K. Yemmireddy

School of Earth, Environmental, & Marine Sciences Faculty Publications

Foodborne pathogens such as Salmonella, E. coli O157:H7, and Listeria monocytogenes are known to survive under different environmental stresses with an effect on their physiological properties. The purpose of this study was to determine the effect of different environmental stresses on the foodborne pathogens response to subsequent chemical treatments. Three types of pathogens Salmonella, E. coli O157:H7, and Listeria monocytogenes were subjected to different environmental stresses: (i) Desiccation (ii) high salt (iii) low pH, and (iv) temperatures (14, 23, and 37 °C) during their growth. The cells harvested at their early stationary growth phase were subsequently subjected to chlorine (100 …

Movement Patterns Of The Shovelnose Guitarfish (Pseudobatos Productus) And California Bat Ray (Myliobatis Californica) In The Southern California Bight, Annabel Gong

Theses

While the movement patterns of large elasmobranch species have been studied extensively, those of smaller, mesopredatory species remain understudied. The shovelnose guitarfish (Pseudobatos productus) and the California bat ray (Myliobatis californica) are among the least studied elasmobranchs in the Southern California Bight. This study quantified the broad- and fine-scale movement patterns of these species using passive acoustic telemetry. Twelve guitarfish were surgically implanted with coded acoustic transmitters at a known aggregation site off La Jolla (San Diego County), California, USA and tracked for 849.5 days each, on average. Six bat rays were also implanted here and tracked for …

Development And Validation Of An Edna Protocol For Monitoring Endemic Asian Spiny Frogs In The Himalayan Region Of Pakistan, Muhammad Saeed, Muhammad Rais, Ayesha Akram, Maggie R. Williams, Kenneth F. Kellner, Syed A. Hashsham, Drew R. Davis

School of Earth, Environmental, & Marine Sciences Faculty Publications

Wildlife monitoring programs are instrumental for the assessment of species, habitat status, and for the management of factors affecting them. This is particularly important for species found in freshwater ecosystems, such as amphibians, as they have higher estimated extinction rates than terrestrial species. We developed and validated two species-specific environmental DNA (eDNA) protocols and applied them in the field to detect the Hazara Torrent Frog (Allopaa hazarensis) and Murree Hills Frog (Nanorana vicina). Additionally, we compared eDNA surveys with visual encounter surveys and estimated site occupancy. eDNA surveys resulted in higher occurrence probabilities for both A. …

South-West Estuarine And Nearshore Finfish Resource Part 1: Sea Mullet And Yellowfin Whiting, Rodney Duffy Dr., David Harris, Emily Fisher, Kim Smith, Danielle Johnston, Ainslie Denham, Alex Hesp, Blaine Hodgson, Amber Quinn, Marcus Newman

Fisheries Research Reports

This report focuses on one of the primary target species for which biomass-based stock assessments are periodically undertaken - sea mullet (Mugil cephalus). The report also includes a recent stock assessment for yellowfin whiting (Sillago schomburgkii) due to concerns regarding substantial increases in catch relative to historic levels.

Status of stock(s)

Sea mullet

The current stock level is considered to be acceptable, and the current level of fishing mortality is unlikely to deplete the stock to a level at which recruitment could be impaired. On the basis of the evidence provided, the sea mullet stock in …

Characterization Of Particulate Matter Species In An Area Impacted By Aggregate And Limestone Mining North Of San Antonio, Tx, Usa, Amit U. Raysoni, Esmeralda Mendez, August Luna, Joe Collins

School of Earth, Environmental, & Marine Sciences Faculty Publications

Aggregate and limestone mining in San Antonio's Bexar and Comal counties in Texas, USA, has caused considerable health concerns as of late. Aggregate mining actions can result in localized air quality issues in any neighborhood. Furthermore, heavy truck traffic, hauling, and transportation of the mined material contribute to pollution. In this research, PM species were sampled at four locations north of the San Antonio city limits. The data were collected using a TSI Air Quality Sampler that sampled PM1, PM2.5, PM4, PM10, wind speed, wind direction, temperature, and relative humidity. Continuous data with 1 min averages were recorded during the …

Environment-Driven Shifts In Inter-Individual Variation And Phenotypic Integration Within Subnetworks Of The Mussel Transcriptome And Proteome, Richelle L. Tanner, Lani U. Gleason, W. Wesley Dowd

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

The environment can alter the magnitude of phenotypic variation among individuals, potentially influencing evolutionary trajectories. However, environmental influences on variation are complex and remain understudied. Populations in heterogeneous environments might exhibit more variation, the amount of variation could differ between benign and stressful conditions, and/or variation might manifest in different ways among stages of the gene-to-protein expression cascade or among physiological functions. Here, we explore these three issues by quantifying patterns of inter-individual variation in both transcript and protein expression levels among California mussels, Mytilus californianus Conrad. Mussels were exposed to five ecologically relevant treatments that varied in the mean …

Development And Assessment Of An Environmental Dna (Edna) Assay For A Cryptic Siren (Amphibia: Sirenidae), Krista M. Ruppert, Drew R. Davis, Md Saydur Rahman, Richard J. Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

Environmental DNA (eDNA) assays have become a major aspect of surveys for aquatic organisms in the past decade. These methods are highly sensitive, making them well-suited for monitoring rare and cryptic species. Current efforts to study the Rio Grande Siren in southern Texas have been hampered due to the cryptic nature of these aquatic salamanders. Arid conditions further add to the difficulty in studying this species, as many water bodies they inhabit are ephemeral, sometimes constraining sampling efforts to a short window after heavy rain. Additionally, sirens are known to cease activity and reside underground when ponds begin to dry …

The Influence Of Particle Concentration And Bulk Characteristics On Polarized Oceanographic Lidar Measurements, Brian L. Collister, Richard C. Zimmerman, Charles I. Sukenik, William M. Balch, Victoria J. Hill

OES Faculty Publications

Oceanographic lidar measurements of the linear depolarization ratio, δ, contain information on the bulk characteristics of marine particles that could improve our ability to study ocean biogeochemistry. However, a scarcity of information on the polarized light-scattering properties of marine particles and the lack of a framework for separating single and multiple scattering effects on δ have hindered the development of polarization-based retrievals of bulk particle properties. To address these knowledge gaps, we made single scattering measurements of δ for several compositionally and morphologically distinct marine particle assemblages. We then used a bio-optical model to explore the influence of multiple …

Using Deep Learning And Uav Imagery To Detect Elkhorn Coral In St. Croix’S East End Marine Park, Samuel Wyatt

Master's Theses

Elkhorn coral, or Acropora palmata, is an important reef building species that promotes species abundance and other ecological services to the communities in the US Virgin Islands. We captured high resolution imagery of a reef in St. Croix’s East End Marine Park using a Wingtra One UAV. We then used deep learning techniques to detect individual coral colonies. We compared two deep learning models, FasterRCNN and MaskRCNN, and found that the models achieved accuracy shores up to 0.78. These scores improved when examining only larger corals in shallow waters. The model was able to both detect Elkhorn coral and …

Ocean Quahog (Arctica Islandica) Population Dynamics: Sex-Based Demographics And Regional Comparisons In The Northwest Atlantic, Kathleen M. Hemeon

Dissertations

Arctica islandica (ocean quahog) is the longest-lived bivalve on Earth. Individuals on the deep continental shelf of the Mid-Atlantic (US) can survive for centuries, and when found in the colder, boreal waters of Iceland, ages over 500 years can be reached. The ocean quahog is important in the US, yet very little is known about the resiliency of the ocean quahog stock to fishing activity, and ocean quahog recruitment patterns over time. To quantify and constrain age-reader error prior to age analysis, a triple-method error protocol was developed for A. islandica that included age-reader bias, precision, and error frequency. The …