Marine Biology Commons^™

Striped Blenny (Chasmodes Bosquianus) Behavior And Shelter Use In A Southeastern Salt Marsh Tidal Creek, Brooklyn Johnson, Juliana Harding

Honors Theses

Temperate estuaries are important habitats for resident species and maturing juvenile transient fishes. The North Inlet estuary, SC resident fish fauna includes the Striped Blenny (Chasmodes bosquianus) and Crested Blenny (Hypleurochilus geminatus). Individual blenny males occupy habitat shelters year-round. During breeding season, blenny males attract mates to nest and protect developing embryos within the nest. Salinity requirements establish blenny spatial distribution in the estuary. Seasonal spawning activity by these temperate blenny species is related to water temperature and seasonal productivity patterns. Blenny nest site occupancy patterns relative to the lunar cycle, water depth, and salinity were …

The Open-Ocean Gulf Of Mexico After Deepwater Horizon: Synthesis Of A Decade Of Research, Tracey Sutton, Rosanna J. Milligan, Kendra Daly, Kevin M. Boswell, April B. Cook, Maëlle Cornic, Tamara Frank, Kaitlin Frasier, Daniel Hahn, Frank Hernandez, John Hildebrand, Chuanmin Hu, Matthew Johnston, Samantha B. Joye, Heather Judkins, Jon A. Moore, Steven A. Murawski, Nina Pruzinsky, John A. Quinlan, Andrew Remsen, Kelly L. Robinson, Isabel C. Romero, Jay R. Rooker, Michael Vecchione, R. J. David Wells

Marine & Environmental Sciences Faculty Articles

The scale of the Deepwater Horizon disaster was and is unprecedented: geographic extent, pollutant amount, countermeasure scope, and of most relevance to this Research Topic issue, range of ecotypes affected. These ecotypes include coastal/nearshore, continental shelf, deep benthic, and open-ocean domains, the last of which is the subject of this synthesis. The open-ocean ecotype comprises ~90% of the volume of the Gulf of Mexico. The exact percentage of this ecotype contaminated with toxins is unknown due to its three-dimensional nature and dynamics, but estimates suggest that the footprint encompassed most of its eastern half. Further, interactions between the water column …

Length-Based Risk Analysis Of Management Options For The Southern Florida Usa Multispecies Coral Reef Fish Fishery, Jerald Ault, Steven G. Smith, Matthew W. Johnson, Laura Jay W. Grove, James A. Bohnsack, Gerard T. Dinardo, Caroline Mclaughlin, Nelson M. Ehrhardt, Vanessa Mcdonough, Michael P. Seki, Steven Miller, Jiangang Luo, Jeremiah Blondeau, Michael P. Crosby, Glenn Simpson, Mark E. Monaco, Clayton G. Pollock, Michael W. Feeley, Alejandro Acosta

Marine & Environmental Sciences Faculty Articles

Exploitation impacts and management options for 15 coral reef fish species central to the commercial and recreational fisheries of the southern Florida USA coral reef ecosystem were evaluated using a length-based risk analysis (LBRA) framework. Population abundance-at-length composition data were obtained from several regional federal-state sampling programs. These and updated life history demographic data were integrated into a length-based numerical cohort model to generate LBRA fishery sustainability metrics from a probabilistic perspective. Three of five groupers, eight of eight snappers, and two of two grunts were below the 40% spawning potential ratio (SPR) stock sustainability minimum; ten of these …

Ecological Risk Assessment For The Marine Aquarium Fish Resource, Kimberley Smith, Amelia Bissell, Carly Bruce

Fisheries Research Reports

In November 2021, the Department of Primary Industries and Regional Development convened an Ecological Risk Assessment (ERA) of the Western Australian fisheries that access the Marine Aquarium Fish Resource. ERAs are conducted by the Department as part of its Ecosystem-Based Fisheries Management framework. Outputs of this ERA will inform future versions of the Harvest Strategy for the Resource. Additionally, this ERA is a requirement of the Wildlife Trade Operation approval for the Marine Aquarium Fish Managed Fishery (MAFMF).

Ecological impacts of the MAFMF, which is the only commercial fishery that targets the Resource, and other extractive sectors that access the …

Ballasting System For An Autonomous Underwater Vehicle, Noura Rayes, Bahram Nassersharif, Zach Champney, Kyle Alessandro, Jason Mirandou

Senior Honors Projects

NOURA RAYES (Mechanical Engineering); Ballasting System for an Autonomous Underwater Vehicle Sponsor: Bahram Nassersharif (Mechanical Engineering)

Over the last year, our Mechanical Engineering Capstone team, Nautilus, has been working to design a ballasting system for various Autonomous Underwater Vehicles (AUVs) sponsored by Raytheon Technologies. Common AUV systems are used for a wide range of applications from environmental monitoring, oceanic exploration, to data collection. AUVs also have many technical advantages that make underwater tasks more efficient, cost-effective, and generally safer. Raytheon Technology, specifically, is looking to improve their existing ballasting mechanism for their AUVs to use for military defense. For this …

Feeding Preference Of The Sea Urchin Arbacia Punctulata For Algal Turf Over Kelp In A Degraded Kelp Forest Ecosystem, Kenneth J. Hamel

Theses, Dissertations and Culminating Projects

Increasingly severe ocean warming and marine heatwave events are driving declines in habitat-forming kelps worldwide. Direct mortality from extreme temperatures, coupled with destabilization of kelp forest communities, commonly trigger ecological community shifts from dominant kelp forests to an algal turf dominated state. Opportunistic algal turf species are more resilient to warming and lack the fundamental structure of kelp forests, and thus reduce ecosystem services and biodiversity. Once in place, algal turf communities contain ecological feedback mechanisms, diminishing kelp recruitment, and potential recovery. The various feedback mechanisms and ecological thresholds that maintain or drive community shifts between kelp forest and algal …

A Biological Condition Gradient For Coral Reefs In The Us Caribbean Territories: Part I. Coral Narrative Rules, Deborah Santavy, Susan K. Jackson, Benjamin Jessup, Jeroen Gerritsen, Caroline Rogers, William S. Fisher, Ernesto Weil, Alina Szmant, David Cuevas-Miranda, Brian K. Walker, Christopher Jeffrey, Patricia Bradley, David Ballantine, Loretta Roberson, Hector Ruiz-Torres, Brandi Todd, Tyler Smith, Randy Clark, Ernesto Diaz, Jorge Bauzá-Ortega, Christina Horstmann, Sandy Raimondo

Marine & Environmental Sciences Faculty Articles

As coral reef condition and sustainability continue to decline worldwide, losses of critical habitat and their ecosystem services have generated an urgency to understand and communicate reef response to management actions, environmental contamination, and natural disasters. Increasingly, coral reef protection and restoration programs emphasize the need for robust assessment tools for protecting high-quality waters and establishing conservation goals. Of equal importance is the need to communicate assessment results to stakeholders, beneficiaries, and the public so that environmental consequences of decisions are understood. The Biological Condition (BCG) model provides a structure to evaluate the condition of a coral reef in increments …

Temporal And Spatial Comparison Of Pseudo-Nitzschia Species Composition And Domoic Acid In Narragansett Bay, Rhode Island And The Northeast U.S. Shelf, Isabella Church, Bethany D. Jenkins

Senior Honors Projects

Diatoms are unicellular algae that make up a significant portion of phytoplankton biomass at the base of marine food webs. Narragansett Bay (NB), RI is home to several species of the diatom genus Pseudo-nitzschia (P-n), some of which are known to cause harmful algal blooms through the production of the potent neurotoxin domoic acid (DA). This toxin can lead to Amnesic Shellfish Poisoning in humans through the consumption of affected shellfish. Although the presence of P-n has been well established in NB for over 50 years, DA levels have only recently become a problem, with shellfish harvest closures …

Evaluating Methods To Determine The Maximum Oxygen Consumption By The Gulf Killifish, Fundulus Grandis, Sylvia Mullen

Senior Honors Theses

Metabolic rate is an essential feature of animal physiology and ecology. The rate of aerobic metabolism, as determined by oxygen consumption rate (MO2), is influenced by a variety of factors, including body size, temperature, and activity levels. Maximum aerobic metabolic rate (MMR) reflects the physiological capacity of an animal for oxygen extraction and utilization. As such, MMR is argued to be an important feature of an animal’s life history. For fish, MMR is frequently estimated as the peak MO2 immediately following an exhaustive chase, although several studies indicate that this value may underestimate MMR. Rather, MMR may be attained during …

Repeated Boat Noise Exposure Damages Inner Ear Sensory Hair Cells And Decreases Hearing Sensitivity In Atlantic Croaker (Micropogonias Undulatus), Gina A. Badlowski

LSU New Orleans Theses and Dissertations

No abstract provided.

Effects Of Tributyltin Exposure On 8-Ohdg And Dsdna Expressions, Oxidative And Nitrative Stress In The American Oyster, Crassostrea Virginica, Mohan Kumar Dash

Theses and Dissertations

Environmental pollution increases due to anthropogenic activities. Different types of pollutants and/or chemicals impair growth, reproduction and development in aquatic organisms. Tributyltin (TBT, an organotin compound) is a tremendously toxic substance which widely uses as antifouling paints used in boats, hulls, and ships. The toxic effect of TBT is well documented in teleost species. The American oyster (Crassostrea virginica) is an ideal shellfish species to study on TBT exposure DNA lesion and oxidative/nitrative stress. In this study, the effects of TBT on 8’-hyrodxy-2’-deoxyguanosine (8-OHdG, a molecular marker), dsDNA, dinitrophenyl protein …

Climate-Driven Stock Shifts And Expansions In The U.S. Northeast Shelf: Identifying Challenges, Opportunities, And Barriers Through Fishermen And Manager Perspectives, Sophie A. Swetz

All Theses And Dissertations

Climate-driven warming in the U.S. Northeast Shelf (NES) has led to changes in the spatial distributions of many marine resources. Shifts and expansions of commercially important fish stocks pose major challenges to fishermen and fisheries managers in this region. American lobster (Homarus americanus) in the Gulf of Maine (GOM) is one of these impacted stocks and is projected to continue its shift towards more northern and offshore areas. Continued ocean warming could potentially reduce the GOM lobster stock by up to 60% over the next several decades. Given Maine’s reliance on its lobster fishery—which contributes over 80% of …

Possible Surf And Turf Mutualism: The Potential Of Yeast Grown From Maine Wood As Feed For Atlantic Salmon, Gina Scott

All Theses And Dissertations

With fed aquaculture expanding, challenges are being faced with increasing demands for protein for feed. Fishmeal as a protein is at high cost and low supply, and meals from terrestrial agriculture can impact fish health; both also generate environmental challenges. One potential alternative protein is yeast, which can be grown using waste softwood. Simultaneously, Maine forestry has lost buyers of waste wood with several paper mill closures. If yeast is produced as an alternative protein for fish feed using this wood, both Maine Atlantic salmon farming, Maine’s most valuable form of aquaculture, and Maine forestry could benefit. Environmental impact and …

Characterizing Gray Snapper (Lutjanus Griseus) Life History In The Northcentral Gulf Of Mexico: Age And Growth, Mortality, And Reproduction, Edward Kim

Graduate Theses and Dissertations (2019 - present)

Gray Snapper (Lutjanus griseus) constitute a significant recreational fishery and minor commercial fishery throughout the Gulf of Mexico, and review of the recent assessment determined that the stock is overfished and has been undergoing overfishing. The absence of regional baseline data in the northcentral Gulf of Mexico, combined with projections of range expansion and subsequent population growth due to climatic warming, highlight the need for the present investigation into the age and growth, mortality, and reproduction of this species in Alabama and Mississippi. Sex-specific growth curves constructed using the von Bertalanffy growth function demonstrated a significantly greater mean asymptotic length …

Site Fidelity Of Bottlenose Dolphins (Tursiops Truncatus) Using Elemental Analyses And Photo-Identification, Lauren R. Clance

Graduate Theses and Dissertations (2019 - present)

The objective of this study was to determine if bottlenose dolphins (Tursiops truncatus) in Alabama waters acquire location-specific elemental signatures indicative of site fidelity. I measured trace metal concentrations (Chapter II) and stable isotope ratios (Chapter III) in skin from free-ranging dolphins remotely biopsied in Mobile Bay, the northern Gulf of Mexico (Gulf) and eastern Mississippi Sound (EMSS). Elemental findings were corroborated with photo-identification data. I found that dolphins acquired some location-specific elements indicative of site fidelity, with the greatest differences at geographic extremes, particularly relative to salinity. For trace metals, highest concentrations were found in winter, consistent with higher …

Coastal Sediment Response To The Diel Oxygen Cycle, Kara Gadeken

Graduate Theses and Dissertations (2019 - present)

Shallow coastal sediments are sites of intense respiration and organic matter breakdown. Macroinfauna bioturbate and bioirrigate sediments which supplies microbes with oxygen and newly deposited organic material from surface sediments, facilitating microbial remineralization of organic matter. These processes depend heavily on the concentration of dissolved oxygen in overlying water. Shallow water oxygen patterns often follow a diel cycle as dissolved oxygen decreases at night due to respiration and then increases during the day with photosynthesis, creating recurring suboxic conditions that are potentially stressful to organisms. Sediment oxygen flux is known to depend on ambient dissolved oxygen concentration, but behavioral responses …

The Form And Function Of Cranial Spines In Fishes, Louis Michael Penrod

Theses and Dissertations

Despite the prevalence of fishes that express cranial spines, quantitative investigations into the function of these spines are rare. Function is often assumed with little or no evidence. Commonly, spine-like structures are considered to be used for defense despite spines potentially being used for other purposes. Here, I took a high-level approach to investigate the morphology and potential functions of cranial spines in over 2000 fishes. Identifying the function of cranial spines in fishes not only informs us as to how these fishes interact with conspecifics, with other species, and with their environment, but also may provide advances in human …

Mycobacteriosis Of Striped Bass (Morone Saxatilis) In Virginia Tributaries Of The Chesapeake Bay, Joshua S. Mcgilly

Biological Sciences Theses & Dissertations

Mycobacteriosis was first documented in Chesapeake Bay striped bass (Morone saxatilis) in 1997 after fish exhibited emaciation and skin lesions. Since it was first identified, studies of mycobacteriosis in the mainstem of the Chesapeake Bay (2003-2007) and the Rappahannock River (2005-2012) have shown high disease prevalence and disease-associated mortality. Until this study, no current prevalence data existed from the Rappahannock River, and no published prevalence data existed for the James River, leaving a gap in our understanding of this disease in major Chesapeake Bay tributaries. We began gathering mycobacteriosis prevalence data from an existing survey collecting striped bass …

Red Harvester Ant (Pogonomyrmex Barbatus F. Smith; Hymenoptera: Formicidae) Preference For Cover Crop Seeds In South Texas, Lilly Victoria Elliott-Vidaurri, Daniella Rivera, Adrian Noval, Robin A. Choudhury, Hannah J. Penn

School of Earth, Environmental, & Marine Sciences Faculty Publications

Harvester ants often selectively forage seeds, causing these ants to be viewed as pests in agricultural areas where they may forage on crop seeds. While little research has been done on harvester ant preferences for cover crop seeds, grower observations in the Lower Rio Grande Valley (LRGV) suggest that ants may remove these seeds before germination. We examined red harvester ant (Pogonomyrmex barbatus F. Smith) preferences for cover crop seeds (fescue, oat, sunn hemp, radish, vetch, and wheatgrass) and the effects of a commonly used bacterial seed inoculant. We evaluated relative preferences using seed depots presented to colonies with no …

The Deep-Pelagic Sergestid Shrimp Assemblage In The Gulf Of Mexico In The Vicinity Of The Deepwater Horizon Oil Spill, Erik W. Hine

All HCAS Student Capstones, Theses, and Dissertations

This thesis focuses on the geographical (near-slope vs. offshore) and temporal analyses (2011 – 2018) of the Sergestidae assemblage, the crustacean family with the fourth highest total biomass, in the Gulf of Mexico near the location of the Deepwater Horizon oil spill. The abundance and biomass of the assemblage were analyzed to determine if statistical differences were present between the near-slope and offshore environments. In addition, this study analyzed the vertical distributions of sergestid species in the epipelagic, mesopelagic, and bathypelagic zones to determine the extent of the migratory behavior of these species. Lastly, the abundance and biomass in the …