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State Of The River Report For The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, And Contaminants 2012, Environmental Protection Board, City of Jacksonville, University of North Florida, Jacksonville University 2012 University of North Florida

State Of The River Report For The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, And Contaminants 2012, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University

State of the River Report

No abstract provided.


An Introduction To Ecology Of Infectious Diseases - Oysters And Estuaries, Eileen E. Hofmann, Susan E. Ford 2012 Old Dominion University

An Introduction To Ecology Of Infectious Diseases - Oysters And Estuaries, Eileen E. Hofmann, Susan E. Ford

OES Faculty Publications

Infectious diseases are recognized as an important factor regulating marine ecosystems (Harvell et al., 1999, 2002, 2004; Porter et al., 2001; McCallum et al., 2004; Ward and Lafferty, 2004; Stewart et al., 2008; Bienfang et al., 2011). Many of the organisms affected by marine diseases have important ecological roles in estuarine and coastal environments and some are also commercially important. Outbreaks of infectious diseases in these environments, referred to as epizootics, can produce significant population declines and extinctions, both of which threaten biodiversity, food web interactions, and ecosystem productivity (Harvell et al., 2002, 2004).


Brunkow Studies Health Of Midwest Freshwaters, Aldemaro Romero Jr. 2012 CUNY Bernard M Baruch College

Brunkow Studies Health Of Midwest Freshwaters, Aldemaro Romero Jr.

Publications and Research

No abstract provided.


Effects Of Hypoxia Exposure On Hepatic Cytochrome P450 1a (Cyp1a) Expression In Atlantic Croaker: Molecular Mechanisms Of Cyp1a Down-Regulation, Md. Saydur Rahman, Peter Thomas 2012 The University of Texas Rio Grande Valley

Effects Of Hypoxia Exposure On Hepatic Cytochrome P450 1a (Cyp1a) Expression In Atlantic Croaker: Molecular Mechanisms Of Cyp1a Down-Regulation, Md. Saydur Rahman, Peter Thomas

School of Earth, Environmental, & Marine Sciences Faculty Publications

Hypoxia-inducible factor-α (HIF-α) and cytochrome P450 1A (CYP1A) are biomarkers of environmental exposure to hypoxia and organic xenobiotic chemicals that act through the aryl hydrocarbon receptor, respectively. Many aquatic environments heavily contaminated with organic chemicals, such as harbors, are also hypoxic. Recently, we and other scientists reported HIF-α genes are upregulated by hypoxia exposure in aquatic organisms, but the molecular mechanisms of hypoxia regulation of CYP1A expression have not been investigated in teleost fishes. As a first step in understanding the molecular mechanisms of hypoxia modulation of CYP1A expression in fish, we characterized CYP1A cDNA from croaker liver. Hypoxia exposure …


Protandric Simultaneous Hermaphroditism In Parhippolyte Misticia (Clark, 1989) (Caridea: Hippolytidae): Implications For The Evolution Of Mixed Sexual Systems In Shrimp, Hitoshi Onaga, G. Curt Fiedler, J. Antonio Baeza 2012 Old Dominion University

Protandric Simultaneous Hermaphroditism In Parhippolyte Misticia (Clark, 1989) (Caridea: Hippolytidae): Implications For The Evolution Of Mixed Sexual Systems In Shrimp, Hitoshi Onaga, G. Curt Fiedler, J. Antonio Baeza

Biological Sciences Faculty Publications

The sexual system of the shrimp Parhippolyte misticia (Clark, 1989), inhabiting the rocky subtidal at Okinawa, Japan and Kimbe Bay, Papua New Guinea, was examined. Dissections suggested that the population consisted of male phase (MP) and functional simultaneous euhermaphrodite (EH) individuals. MPs have cincinulli and appendices masculinae on the first and second pair of pleopods, respectively, gonopores located at the coxae of the third pair of walking legs, and ovotestes with a well-developed male portion containing sperm, but an undeveloped female portion. EHs lacked appendices masculinae and cincinulli. However, they have male gonopores and ovotestes with well-developed ovaries containing mature …


Expansion Dating: Calibrating Molecular Clocks In Marine Species From Expansions Onto The Sunda Shelf Following The Last Glacial Maximum, Eric D. Crandall, Elizabeth J. Sbrocco, Timery S. DeBoer, Paul H. Barber, Kent E. Carpenter 2012 Old Dominion University

Expansion Dating: Calibrating Molecular Clocks In Marine Species From Expansions Onto The Sunda Shelf Following The Last Glacial Maximum, Eric D. Crandall, Elizabeth J. Sbrocco, Timery S. Deboer, Paul H. Barber, Kent E. Carpenter

Biological Sciences Faculty Publications

The rate of change in DNA is an important parameter for understanding molecular evolution and hence for inferences drawn from studies of phylogeography and phylogenetics. Most rate calibrations for mitochondrial coding regions in marine species have been made from divergence dating for fossils and vicariant events older than 1-2 My and are typically 0.5-2% per lineage per million years. Recently, calibrations made with ancient DNA (aDNA) from younger dates have yielded faster rates, suggesting that estimates of the molecular rate of change depend on the time of calibration, decaying from the instantaneous mutation rate to the phylogenetic substitution rate. aDNA …


Marine Invertebrate Life, Rachael Kemp, Howard Peters, Louise Allcock, Kent Carpenter, David Obura, Beth Polidoro, Nadia Richman 2012 Zoological Society of London

Marine Invertebrate Life, Rachael Kemp, Howard Peters, Louise Allcock, Kent Carpenter, David Obura, Beth Polidoro, Nadia Richman

Biological Sciences Faculty Publications

Marine invertebrates are key components of all marine ecosystems, and play critical roles in essential ecological processes, food provision for humans, and diverse and productive food webs. Despite their importance, the vast majority of marine invertebrates are very poorly known. Research has tended to focus on the larger, more conspicuous and economically important species. Humans have long exploited the margins of pelagic ecosystems, but over the past five decades, rapid technological advancement has allowed more routine access to deeper waters [1]. Increasing exploration into the oceans that cover 70% of the world's surface has led to rapid advancement of species …


Extinction Risk And Bottlenecks In The Conservation Of Charismatic Marine Species, Loren McClenachan, Andrew B. Cooper, Kent E. Carpenter, Nicholas K. Dulvy 2012 Old Dominion University

Extinction Risk And Bottlenecks In The Conservation Of Charismatic Marine Species, Loren Mcclenachan, Andrew B. Cooper, Kent E. Carpenter, Nicholas K. Dulvy

Biological Sciences Faculty Publications

The oceans face a biodiversity crisis, but the degree and scale of extinction risk remains poorly characterized. Charismatic species are most likely to gar- ner greatest support for conservation and thus provide a best-case scenario of the status of marine biodiversity. We summarize extinction risk and diagnose impediments to successful conservation for 1,568 species in 16 families of marine animals in the movie Finding Nemo. Sixteen percent (12–34%) of those that have been evaluated are threatened, ranging from 9% (7–28%) of bony fishes to 100% (83–100%) of marine turtles. A lack of scientific knowledge impedes analysis of threat status …


Would Predatory Drillhole Frequency On Chione Spp. Increase Under The Suggested Climate Change Scenario? Comparing Pleistocene And Modern Rhodolith Beds, Carlos E. Cintra-Buenrostro 2012 The University of Texas Rio Grande Valley

Would Predatory Drillhole Frequency On Chione Spp. Increase Under The Suggested Climate Change Scenario? Comparing Pleistocene And Modern Rhodolith Beds, Carlos E. Cintra-Buenrostro

School of Earth, Environmental, & Marine Sciences Faculty Publications

The analysis of predatory drillholes allow paleontologists to reconstruct trophic relationships of ancient systems. To evaluate the potential effects of climate and sea level change on predation frequency by gastropods on bivalves, species of the genus Chione from the Gulf of California were selected because they are a commercially exploited resource - at least locally - and abundant in both modern and Pleistocene (sea level high stand of oxygen substage 5e) samples from rhodolith beds. The present study focused to answer a practical question: would predation on Chione spp. increase under the suggested climate - warming - change scenario? A …


Extensive Reproductive Disruption, Ovarian Masculinization And Aromatase Suppression In Atlantic Croaker In The Northern Gulf Of Mexico Hypoxic Zone, Peter Thomas, Md. Saydur Rahman 2012 The University of Texas Rio Grande Valley

Extensive Reproductive Disruption, Ovarian Masculinization And Aromatase Suppression In Atlantic Croaker In The Northern Gulf Of Mexico Hypoxic Zone, Peter Thomas, Md. Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

The long-term impacts on marine ecosystems of the recent dramatic worldwide increase in the incidence of coastal hypoxia are unknown. Here, we show widespread reproductive disruption in Atlantic croakers collected from hypoxic sites approximately 120 km apart in the extensive northern Gulf of Mexico continental shelf hypoxic zone. Gonadal growth and gamete production were impaired in croakers from hypoxic sites compared with fish from reference normoxic sites east of the Mississippi River Delta. Male germ cells were detected in approximately 19 per cent of croaker ovaries collected in the hypoxic region, but were absent in ovaries from normoxic sites. In …


A Western Range Extension For Caprella Scaura (Amphipoda: Caprellidae) In The Aransas Bay Ecosystem, Texas, Nicholas L. Ahrens, Faye P. Grubbs 2012 Rockport Marine Laboratory, Texas

A Western Range Extension For Caprella Scaura (Amphipoda: Caprellidae) In The Aransas Bay Ecosystem, Texas, Nicholas L. Ahrens, Faye P. Grubbs

Gulf and Caribbean Research

During March 2009, the skeleton shrimp Caprella scaura and Paracaprella tenuis (Amphipoda: Caprellidae) were collected from several locations throughout the Aransas Bay, Texas ecosystem from Texas Parks and Wildlife fishery—independent trawl and oyster dredge samples. This is a western range expansion for C. scaura; P. tenuis has been reported from this area before. Both species were exclusively associated with a bryozoan, Bugula neritina. Densities of both species ranged between 0.1–3.4 individuals per gram of attached bryozoans. A reproductive population is likely established since several sizes, including adult males and gravid females, were observed. No caprellids were observed after …


Evidence Of Spawning Capable Tarpon (Megalops Atlanticus) Off The Louisiana Coast, William Stein III, Nancy J. Brown-Peterson, James S. Franks, Martin T. O'Connell 2012 University of New Orleans

Evidence Of Spawning Capable Tarpon (Megalops Atlanticus) Off The Louisiana Coast, William Stein Iii, Nancy J. Brown-Peterson, James S. Franks, Martin T. O'Connell

Gulf and Caribbean Research

Despite the fact that the tarpon (Megalops atlanticus) is a popular sport fish in the Gulf of Mexico (GOM; Ault et al. 2008), little is known of its spawning behavior. Spawning M. atlanticus have never been documented and fertilized eggs have not been observed in situ (Ault et al. 2008). While it has been suggested that adult M. atlanticus move to deep water off the southwest coast of Florida and into the Yucatan Channel to spawn, the actual locations of spawning grounds remain unknown (Smith 1980, Crabtree et al. 1995, Crabtree et al. 1997). Distribution patterns of larvae …


How Selective Is Social Learning In Dolphins?, Stan A. Kuczaj II, Deirdre Yeater, Lauren Highfill 2012 University of Southern Mississippi

How Selective Is Social Learning In Dolphins?, Stan A. Kuczaj Ii, Deirdre Yeater, Lauren Highfill

Psychology Faculty Publications

Social learning is an important aspect of dolphin social life and dolphin behavioral development. In addition to vocal social learning, dolphins discover behaviors for foraging, play, and social interactions by observing other members of their social group. But dolphins neither indiscriminately observe nor mindlessly mimic other dolphins. To the contrary, dolphin calves are quite selective in their choices of who to observe and/or imitate. Calves are most likely to learn foraging behaviors from their mothers, but they are more likely to watch and reproduce the play behaviors of other calves than the play behaviors of adult dolphins (including their mothers). …


Wounded Kelps: Patterns And Susceptibility To Breakage, Thibaut De Bettignies, Mads Thomsen, Thomas Wernberg 2012 Edith Cowan University

Wounded Kelps: Patterns And Susceptibility To Breakage, Thibaut De Bettignies, Mads Thomsen, Thomas Wernberg

Research outputs 2012

Kelps are highly productive seaweeds predominantly found in wave-exposed environments. Physical and biological processes such as sand abrasion, whiplash and grazing can wound kelp tissue, potentially weakening its ability to withstand wave forces. Despite the ecological importance of kelp tissue loss, few studies have quantified wounding patterns in kelps or how wounding might affect the biomechanical properties of kelps. We quantified the prevalence of wounds on 360 Ecklonia radiata kelps collected across 3 different reef lines (levels of wave exposure) in April (autumn), June (early winter), August (winter) and October (early spring) (i.e. before, during and after peak wave activity). …


Role Of Food Availability In The Bathymetric Distribution Of The Starfish Marthasterias Glacialis (Lamk.)On Reefs Of Northern Portugal [Efecto De La Disponibilidad Alimenticia Sobre La Distribución Batimétrica De La Estrella De Mar Marthasterias Glacialis (Lamk.) En Arrecifes Del Norte De Portugal], Fernando Tuya, Pedro Duarte 2012 Edith Cowan University

Role Of Food Availability In The Bathymetric Distribution Of The Starfish Marthasterias Glacialis (Lamk.)On Reefs Of Northern Portugal [Efecto De La Disponibilidad Alimenticia Sobre La Distribución Batimétrica De La Estrella De Mar Marthasterias Glacialis (Lamk.) En Arrecifes Del Norte De Portugal], Fernando Tuya, Pedro Duarte

Research outputs 2012

We examined whether the abundance and size of the starfish Marthasterias glacialis (Lamk.) exhibit a depth-dependent partitioning on subtidal reefs. We tested the hypothesis that differences in food availability can result in habitat partitioning along a depth gradient. The abundance and size of M. glacialis was registered at 4 depth strata: 0-4 m, 4-8 m, 8-12 m, and >12 m; we also recorded the number of food items that they were preying on. The abundance and size of M. glacialis decreased with depth. Mussels (Mytilus galloprivincialis) were the most preyed food item across all depth strata, followed by …


Fussy Feeders: Phyllosoma Larvae Of The Western Rocklobster (Panulirus Cygnus) Demonstrate Prey Preference, M I Saunders, P A Thompson, A G Jeffs, Christin Sawstrom, N Sachlikidis, L E Beckley, A M Waite 2012 Edith Cowan University

Fussy Feeders: Phyllosoma Larvae Of The Western Rocklobster (Panulirus Cygnus) Demonstrate Prey Preference, M I Saunders, P A Thompson, A G Jeffs, Christin Sawstrom, N Sachlikidis, L E Beckley, A M Waite

Research outputs 2012

The Western Rocklobster (Panulirus cygnus) is the most valuable single species fishery in Australia and the largest single country spiny lobster fishery in the world. In recent years a well-known relationship between oceanographic conditions and lobster recruitment has become uncoupled, with significantly lower recruitment than expected, generating interest in the factors influencing survival and development of the planktonic larval stages. The nutritional requirements and wild prey of the planktotrophic larval stage (phyllosoma) of P. cygnus were previously unknown, hampering both management and aquaculture efforts for this species. Ship-board feeding trials of wild-caught mid-late stage P. cygnus phyllosoma in the eastern …


Δ13c Is A Signature Of Light Availability And Photosynthesis In Seagrass, Xingping Hu, David J. Burdige, Richard C. Zimmerman 2012 Old Dominion University

Δ13c Is A Signature Of Light Availability And Photosynthesis In Seagrass, Xingping Hu, David J. Burdige, Richard C. Zimmerman

OES Faculty Publications

We explored the role of light-saturated (carbon-limited) photosynthesis on δ¹³C of turtlegrass (Thalassia testudinum Banks ex Konig) populations from the clear, blue waters of the Great Bahama Bank and the turbid, green waters of Florida Bay using field observations and radiative transfer models. Consistent with numerous previous observations, leaf δ¹³C decreased significantly with water depth in both regions. However the δ¹³C for Bahamas turtlegrass was 3 parts per thousand heavier than that for Florida Bay turtlegrass at equivalent depths, and broadband irradiance explained even less of the δ¹³C variations than depth. Instead, leaf δ¹³C showed a stronger relationship to …


Controls On Dissolved Cobalt In Surface Waters Of The Sargasso Sea: Comparisons With Iron And Aluminum, R. U. Shelley, Peter N. Sedwick, T. S. Bibby, P. Cabedo-Sanz, T. M. Church, R. J. Johnson, A. I. Macey, C. M. Marsay, E. R. Sholkovitz, S. J. Ussher, P. J. Worsfold, M. C. Lohan 2012 Old Dominion University

Controls On Dissolved Cobalt In Surface Waters Of The Sargasso Sea: Comparisons With Iron And Aluminum, R. U. Shelley, Peter N. Sedwick, T. S. Bibby, P. Cabedo-Sanz, T. M. Church, R. J. Johnson, A. I. Macey, C. M. Marsay, E. R. Sholkovitz, S. J. Ussher, P. J. Worsfold, M. C. Lohan

OES Faculty Publications

Dissolved cobalt (dCo), iron (dFe) and aluminum (dAl) were determined in water column samples along a meridional transect (∼31°N to 24°N) south of Bermuda in June 2008. A general north-to-south increase in surface concentrations of dFe (0.3-1.6 nM) and dAl (14-42 nM) was observed, suggesting that aerosol deposition is a significant source of dFe and dAl, whereas no clear trend was observed. for near-surface dCo concentrations. Shipboard aerosol samples indicate fractional solubility values of 8-100% for aerosol Co, which are significantly higher than corresponding estimates of the solubility of aerosol Fe (0.44-45%). Hydrographic observations and analysis of time series rain …


Database Of Diazotrophs In Global Ocean: Abundance, Biomass, And Nitrogen Fixation Rates, Y. W. Luo, S. C. Doney, L. A. Anderson, M. Benavides, I. Berman-Frank, A. Bode, S. Bonnet, K. H. Boström, D. Böttjer, D. G. Capone, M. R. Mulholland 2012 Old Dominion University

Database Of Diazotrophs In Global Ocean: Abundance, Biomass, And Nitrogen Fixation Rates, Y. W. Luo, S. C. Doney, L. A. Anderson, M. Benavides, I. Berman-Frank, A. Bode, S. Bonnet, K. H. Boström, D. Böttjer, D. G. Capone, M. R. Mulholland

OES Faculty Publications

Marine N2 fixing microorganisms, termed di-azotrophs, are a key functional group in marine pelagic ecosystems. The biological fixation of dinitrogen (N2) to bioavailable nitrogen provides an important new source of nitrogen for pelagic marine ecosystems and influences primary productivity and organic matter export to the deep ocean. As one of a series of efforts to collect biomass and rates specific to different phytoplankton functional groups, we have constructed a database on diazotrophic organisms in the global pelagic upper ocean by compiling about 12 000 direct field measurements of cyanobacterial diazotroph abundances (based on microscopic cell counts or …


The Role Of Larval Dispersal In Metapopulation Gene Flow: Local Population Dynamics Matter, Daphne M. Munroe, John M. Klinck, Eileen E. Hofmann, Eric N. Powell 2012 Old Dominion University

The Role Of Larval Dispersal In Metapopulation Gene Flow: Local Population Dynamics Matter, Daphne M. Munroe, John M. Klinck, Eileen E. Hofmann, Eric N. Powell

OES Faculty Publications

The degree of genetic connectivity among populations in a metapopulation has direct consequences for species evolution, development of disease resistance, and capacity of a metapopulation to adapt to climate change. This study used a metapopulation model that integrates population dynamics, dispersal, and genetics within an individual-based model framework to examine the mechanisms and dynamics of genetic connectivity within a metapopulation. The model was parameterized to simulate four populations of oysters (Crassostrea virginica) from Delaware Bay on the mid-Atlantic coast of the United States. Differences among the four populations include a strong spatial gradient in mortality, a spatial gradient …


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