Marine Biology Commons^™

A Streamlined Dna Tool For Global Identification Of Heavily Exploited Coastal Shark Species (Genus Rhizoprionodon), D. Pinhal, Mahmood S. Shivji, Pedro G. Nachtigall, Demian D. Chapman, Cesar Martins

Marine & Environmental Sciences Faculty Articles

Obtaining accurate species-specific landings data is an essential step toward achieving sustainable shark fisheries. Globally distributed sharpnose sharks (genus Rhizoprionodon) exhibit life-history characteristics (rapid growth, early maturity, annual reproduction) that suggests that they could be fished in a sustainable manner assuming an investment in monitoring, assessment and careful management. However, obtaining species-specific landings data for sharpnose sharks is problematic because they are morphologically very similar to one another. Moreover, sharpnose sharks may also be confused with other small sharks (either small species or juveniles of large species) once they are processed (i.e., the head and fins are removed). Here …

Crommet Creek Conservation Area Management Plan, Joanne Glode, Dea Brickner-Wood, Ed Robinson, Wendy Weisiger, Peter Wellenberger, Rachel Stevens

PREP Reports & Publications

The Crommet Creek Conservation Area comprises the largest block of natural lands in the immediate Great Bay watershed, and in New Hampshire’s North Atlantic Coast Ecoregion. It includes the entire watershed of two tidal creeks that flow directly into the Great Bay Estuary. The area has been identified by the Great Bay Resource Protection Partnership as a protection priority due to the size of the natural area; the diversity of habitats and wildlife it supports; and it’s integral role in protecting the regional water quality and resources within the Great Bay Estuary. The Conservation Area includes headwater wetlands, and the …

Genetic Connectivity In Scleractinian Corals Across The Northern Gulf Of Mexico: Oil/Gas Platforms, And Relationship To The Flower Garden Banks, Daniel A. Brazeau, Paul W. Sammarco, James Sinclair

Pharmaceutical Sciences Faculty Publications

The 3,000 oil/gas structures currently deployed in the northern Gulf of Mexico (GOM) provide hard substratum for marine organisms in a region where such has been rare since the Holocene. The major exception to this are the Flower Garden Banks (FGB). Corals are known to have colonized oil/gas platforms around the FGB, facilitating biogeographic expansion. We ask the question, what are the patterns of genetic affinity in these coral populations. We sampled coral tissue from populations of two species occurring on oil and gas platforms: Madracis decactis (hermatype) and Tubastraea coccinea (invasive ahermatype). We sampled 28 platforms along four transects …

Effects Of The Parasitic Dinoflagellate Hematodinium Sp. On Blue Crab (Callinectes Sapidus) Activity Predation And Habitat Selection, John M. Tiggelaar Ii

Biological Sciences Theses & Dissertations

The blue crab Callinectes sapidus occurs along the Atlantic and Gulf coasts of the United States, and in high salinity regions, they are subject to lethal infection by the parasitic dinoflagellate Hematodinium. In Virginia's seaside estuaries, the prevalence of Hematodinium infection of C. sapidus can sometimes exceed 50%, threatening the commercial fishery for this species. Indeed, other commercially important crustacean fisheries have approached collapse due to Hematodinium infections. Most studies of this host-parasite interaction have focused on epidemiology, host-pathogen dynamics, and pathogen transmission, and little is known about the impact of the parasite on host behavior and population dynamics. …

Two- And Three-Dimensional Photogrammetric Mass Estimation Techniques For Two Phocid Species: Halichoerus Grypus And Phoca Vitulina Concolor, Jennifer Harris

All Theses And Dissertations

Collecting mass measurements of seals is a common technique used to determine health. To determine the mass of Western North Atlantic Grey seal (Halichoerus grypus) and Atlantic Harbor seal (Phoca vitulina concolor) pups, a researcher must physically measure each animal. This produces stress for both pups and their mothers. Photogrammetric analysis (PGA) (evaluating photographs to obtain characteristics of a subject) has been used to determine physical measurements in a number of marine mammals. The purpose of this study was to develop a nonintrusive method for determining the mass of grey and harbor seal pups. Through this …

Assessing The Variability In Distribution Of Four Shark Species Within The Mississippi Sound, Daniel Crear

All Theses And Dissertations

Global declines in shark populations have been observed, including several species indigenous to the northwest Atlantic Ocean and the Gulf of Mexico (GOM). Attributing to these declines is a lack of abundance and distribution data of early life stages, particularly within essential habitats such as nursery grounds. Previous research has defined the Mississippi Sound as a multispecies shark nursery, therefore determining how abundance and distribution patterns change will aid in verifying where these species are throughout the year within this shark nursery. Thus, the objectives of the current study were to describe the variability in distributions of four shark species …

Coupled Physical And Biological Modeling Of Atlantic Surfclam Larval Transport And Sub-Population Connectivity In The Middle Atlantic Bight And Georges Bank, Xinzhong (Peter) Zhang, Dale B. Haidvogel, John M. Klinck, Roger Mann, Eric N. Powell

CCPO Publications

No abstract provided.

Predicting The Influence Of Seed And Commercial Oyster Fisheries On Metapopulation Genetic Connectivity Using Model Simulations, Daphne Munroe, Eileen E. Hofmann, Eric N. Powell, John M. Klinck

CCPO Publications

No abstract provided.

How Do Marine Protected Area Strategies Influence Metapopulation Genetic Connectivity? A Modeling Study With Oysters, Daphne Munroe, Eric N. Powell, John M. Klinck, Eileen E. Hofmann

CCPO Publications

No abstract provided.

Diversity Of Tanaidacea (Crustacea: Peracarida) In The World's Oceans - How Far Have We Come?, Gary Anderson, Magdalena Blazewicz-Paszkowycz, Roger Bamber

Faculty Publications

Tanaidaceans are small peracarid crustaceans which occur in all marine habitats, over the full range of depths, and rarely into fresh waters. Yet they have no obligate dispersive phase in their life-cycle. Populations are thus inevitably isolated, and allopatric speciation and high regional diversity are inevitable; cosmopolitan distributions are considered to be unlikely or non-existent. Options for passive dispersion are discussed. Tanaidaceans appear to have first evolved in shallow waters, the region of greatest diversification of the Apseudomorpha and some tanaidomorph families, while in deeper waters the apseudomorphs have subsequently evolved two or three distinct phyletic lines. The Neotanaidomorpha has …

Invasionsoft: A Web-Enabled Tool For Invasive Species Colonization Predictions, Matthew W. Johnston, Samuel J. Purkis

Marine & Environmental Sciences Faculty Articles

Predicting and averting the spread of invasive species is a core focus of resource managers in all ecosystems. Patterns of invasion are difficult to forecast, compounded by a lack of user-friendly species distribution model (SDM) tools to help managers focus control efforts. This paper presents a web-based cellular automata hybrid modeling tool developed to study the invasion pattern of lionfish (Pterois volitans/miles) in the western Atlantic and is a natural extension our previous lionfish study. Our goal is to make publically available this hybrid SDM tool and demonstrate both a test case (P. volitans/miles) and a …

Coral Recruitment To Two Vessel Grounding Sites Off Southeast Florida, Usa, Alison L. Moulding, Vladimir N. Kosmynin, David S. Gilliam

Marine & Environmental Sciences Faculty Articles

Over the last two decades, more than 10 major vessel groundings have occurred on coral reefs offshore southeast Florida. Lack of any published information on coral settlement, post-settlement survival, and juvenile coral growth in the southeast Florida region inhibits efforts to determine if coral populations will be able to effectively re-establish themselves. The goal of this study was to examine these processes to obtain background data needed to determine the potential for natural recovery. Over a three year period annual coral recruitment, juvenile growth, and mortality rates were measured in 20 permanent quadrats at each of two ship grounding and …

A Retrospective Analysis Of Sustainable Oyster Harvest From The Louisiana State Primary Seed Grounds, 1999-2010: A Shell-Neutral Modeling Approach, Thomas M. Soniat, Mahdi Abdelguerfi, Eric N. Powell, John M. Klinck, Eileen E. Hofmann, Shengru Tu, Nathan Cooper, Janak Dahal, John Finigan, Benjamin S. Eberline, Jerome F. La Peyre, Megan K. La Peyre, Keith B. Ibos, Brian Lezina, Patrick Banks

CCPO Publications

No abstract provided.

Insights Into Migration And Development Of Coral Black Band Disease Based On Fine Structure Analysis, Aaron Miller, Patricia Blackwelder, Husain Al-Sayegh, Laurie L. Richardson

Biology Faculty Articles

In many diverse ecosystems, ranging from natural surfaces in aquatic ecosystems to the mammalian gut and medical implants, bacterial populations and communities exist as biofilms. While the process of biofilm development has been well-studied for those produced by unicellular bacteria such Pseudomonas aeruginosa, little is known about biofilm development associated with filamentous microorganisms. Black band disease (BBD) of corals is characterized as a polymicrobial biofilm (mat) community, visually-dominated by filamentous cyanobacteria. The mat migrates across a living coral host, completely lysing coral tissue and leaving behind exposed coral skeleton. It is the only known cyanobacterial biofilm that migrates across …

Siting Study For A Hydrokinetic Energy Project Located Offshore Southeastern Florida: Protocols For Survey Methodology For Offshore Marine Hydrokinetic Energy Projects, Charles Vinick, Charles Messing, Brian K. Walker, John K. Reed, Stephanie Rogers

Marine & Environmental Sciences Faculty Reports

Dehlsen Associates, LLC was awarded a grant by the United States Department of Energy (DOE) Golden Field Office for a project titled “Siting Study Framework and Survey Methodology for Marine and Hydrokinetic Energy Project in Offshore Southeast Florida,” corresponding to DOE Grant Award Number DE-EE0002655 resulting from DOE funding Opportunity Announcement Number DE-FOA- 0000069 for Topic Area 2, and it is referred to herein as “the project.”

The purpose of the project was to enhance the certainty of the survey requirements and regulatory review processes for the purpose of reducing the time, efforts, and costs associated with initial siting efforts …

Weak Prezygotic Isolating Mechanisms In Threatened Caribbean Acropora Corals, Nicole D. Fogarty, Steven V. Vollmer, Don R. Levitan

Marine & Environmental Sciences Faculty Articles

The Caribbean corals, Acropora palmata and A. cervicornis, recently have undergone drastic declines primarily as a result of disease. Previous molecular studies have demonstrated that these species form a hybrid (A. prolifera) that varies in abundance throughout the range of the parental distribution. There is variable unidirectional introgression across loci and sites of A. palmata genes flowing into A. cervicornis. Here we examine the efficacy of prezygotic reproductive isolating mechanisms within these corals including spawning times and choice and no-choice fertilization crosses. We show that these species have subtly different mean but overlapping spawning times, suggesting …

Spatial Analyses Of Benthic Habitats To Define Coral Reef Ecosystem Regions And Potential Biogeographic Boundaries Along A Latitudinal Gradient, Brian K. Walker

Marine & Environmental Sciences Faculty Articles

Marine organism diversity typically attenuates latitudinally from tropical to colder climate regimes. Since the distribution of many marine species relates to certain habitats and depth regimes, mapping data provide valuable information in the absence of detailed ecological data that can be used to identify and spatially quantify smaller scale (10 s km) coral reef ecosystem regions and potential physical biogeographic barriers. This study focused on the southeast Florida coast due to a recognized, but understudied, tropical to subtropical biogeographic gradient. GIS spatial analyses were conducted on recent, accurate, shallow-water (0–30 m) benthic habitat maps to identify and quantify specific regions …

Enhancing Thermal Tolerance By Eliminating The Pejus Range: A Comparative Study With Three Decapod Crustaceans, Jennifer A. Jost, Stephanie M. Podolski, Markus Frederich

Marine Sciences Faculty Publications

Marine invertebrates in the intertidal and subtidal zones are often exposed to highly variable environmental conditions, especially rapid changes in temperature. The ability to survive at different temperatures has previously been described using an extended version of Shelford’s law of tolerance, with optimum, pejus (Latin: ‘turning worse’), and pessimum ranges, and the respective thresholds, critical (Tc) and pejus (Tp) temperatures, that mark the transition from one range into the next. The width of the pejus range, in which the scope for activity gradually declines, varies among species. We tested the hypothesis that the width of the …

Increased Variability Of Microbial Communities In Restored Salt Marshes Nearly 30 Years After Tidal Flow Restoration, Anne E. Bernhard, David Marshall, Lazaros Yiannos

Biology Faculty Publications

We analyzed microbial diversity and community composition from four salt marsh sites that were impounded for 40–50 years and subsequently restored and four unimpounded sites in southeastern Connecticut over one growing season. Community composition and diversity were assessed by terminal restriction fragment length polymorphism (TRFLP) and sequence analysis of 16S ribosomal RNA (rRNA) genes. Our results indicated diverse communities, with sequences representing 14 different bacterial divisions. Proteobacteria, Bacteroidetes, and Planctomycetes dominated clone libraries from both restored and unimpounded sites. Multivariate analysis of the TRFLP data suggest significant site, sample date, and restoration status effects, but the exact causes of these …

Out Of Sight, But Not Out Of Mind: A Look At Nanoparticles In The Marine Environment, Evan Ward, John J. Doyle

Wrack Lines

Nanoparticles exist in many products used by humans, such as sunscreens. medications, cosmetics, paints and electronics. But what is the effect of these tiny particles on the ocean or estuarine environment when the sunscreen washes off? This article looks at that question and at shellfish in particular. Evan Ward and John Doyle are marine scientists at UConn.