A Dna Mini-Barcoding System For Authentication Of Processed Fish Products,
2015
University of Guelph
A Dna Mini-Barcoding System For Authentication Of Processed Fish Products, Shadi Shokralla, Rosalee S. Hellberg, Sara M. Handy, Ian King, Mehrdad Hajibabaei
Food Science Faculty Articles and Research
Species substitution is a form of seafood fraud for the purpose of economic gain. DNA barcoding utilizes species-specific DNA sequence information for specimen identification. Previous work has established the usability of short DNA sequences—mini-barcodes—for identification of specimens harboring degraded DNA. This study aims at establishing a DNA mini-barcoding system for all fish species commonly used in processed fish products in North America. Six mini-barcode primer pairs targeting short (127–314 bp) fragments of the cytochrome c oxidase I (CO1) DNA barcode region were developed by examining over 8,000 DNA barcodes from species in the U.S. Food and Drug Administration …
Enhancing The Ocean Observing System To Meet Restoration Challenges In The Gulf Of Mexico,
2015
University of South Florida
Enhancing The Ocean Observing System To Meet Restoration Challenges In The Gulf Of Mexico, Steven Murawski, William T. Hogarth
C-IMAGE Publications
As a result of fines and penalties generated by the settlement of civil and criminal actions and the Natural Resource Damage Assessment and Restoration (NRDAR) claims resulting from the Deepwater Horizon (DWH) incident, various entities are poised to receive billions of dollars to improve the health and resilience of the Gulf of Mexico large marine ecosystem. While much of the funding will go to economic development in states impacted by the oil spill, the lion’s share will be used to restore specific natural resources damaged as a result of DWH and to tackle larger and more chronic environmental issues such …
An Atlantis Ecosystem Model For The Gulf Of Mexico Supporting Integrated Ecosystem Assessment,
2015
University of South Florida
An Atlantis Ecosystem Model For The Gulf Of Mexico Supporting Integrated Ecosystem Assessment, Cameron Ainsworth, Michael Schirripa, Hem Nalini Morzaria-Luna
C-IMAGE Publications
"The Gulf of Mexico supports a high biological diversity and biomass of fish, seabirds, and mammals; in this region, multiple commercial and recreational fishing fleets operate providing economic resources for local populations. The Gulf is also the site of important oil and gas production and tourism. As a result of intensive human use, the Gulf is subject to various impacts, including oil spills, habitat degradation, and anoxia. Management of this Large Marine Ecosystem requires an ecosystem-based management approach that provides a holistic approach to resource management. The Gulf of Mexico is managed as part of NOAA's Integrated Ecosystem Assessment Program …
Lethal And Sublethal Effects Of Oil, Chemical Dispersant, And Dispersed Oil On The Ctenophore Mnemiopsis Leidyi,
2015
University of Delaware
Lethal And Sublethal Effects Of Oil, Chemical Dispersant, And Dispersed Oil On The Ctenophore Mnemiopsis Leidyi, Ryan F. Peiffer, Jonathan H. Cohen
C-IMAGE Publications
We established the lethal levels for water-accommodated fractions of Corexit® 9500A chemical dispersant, crude oil (WAF), and dispersed crude oil (CEWAF) for the ctenophore Mnemiopsis leidyi at both 15 and 23°C. This gelatinous zooplankter was sensitive to dispersant at both temperatures, as well as to oil solutions, with some increase in toxicity of CEWAF as compared to WAF. Subsequent sublethal assays for routine respiration rate, bioluminescence, and glutathione-s-transferase (GST) activity were conducted on individuals surviving 24 h exposures to test solutions at both 15 and 23°C. GST activity increased significantly in 2.5 and 5 mg l-1 dispersant solutions …
Mathematical Modeling Of Emiliania Huxleyi And A Host-Specific Virus,
2015
Colby College
Mathematical Modeling Of Emiliania Huxleyi And A Host-Specific Virus, Julia Middleton
Honors Theses
The world’s oceans provide the basis for life on the planet. One microscopic algae, the coccolithophores, and Emiliania huxleyi in particular, is a major source of carbon drawdown in the context of the global carbon cycle and account for a significant amount of the primary production in oceanic ecosystems. We know that the oceans are packed with marine viruses and they have an important role in the rise and fall of plankton populations but current mathematical models do not accurately account for virus-host interactions when predicting plankton blooms. Therefore I am using model optimization and comparison techniques to evaluate current …
Iron Supply And Demand In Antarctic Shelf Ecosystem,
2015
Old Dominion University
Iron Supply And Demand In Antarctic Shelf Ecosystem, D. J. Mcgillicuddy Jr., Peter N. Sedwick, Michael S. Dinniman, K. R. Arrigo, T. S. Bibby, B. J. W. Greenan, Eileen E. Hofmann, John M. Klinck, W. O. Smith Jr., S. L. Mack, C. M. Marsay, B. M. Sohst, G. L. Van Dijken
OES Faculty Publications
The Ross Sea sustains a rich ecosystem and is the most productive sector of the Southern Ocean. Most of this production occurs within a polynya during the November-February period, when the availability of dissolved iron (dFe) is thought to exert the major control on phytoplankton growth. Here we combine new data on the distribution of dFe, high-resolution model simulations of ice melt and regional circulation, and satellite-based estimates of primary production to quantify iron supply and demand over the Ross Sea continental shelf. Our analysis suggests that the largest sources of dFe to the euphotic zone are wintertime mixing and …
Predicting Carbon Isotope Discrimination In Eelgrass (Zostera Marina L.) From The Environmental Parameters- Light, Flow, And [Dic],
2015
Old Dominion University
Predicting Carbon Isotope Discrimination In Eelgrass (Zostera Marina L.) From The Environmental Parameters- Light, Flow, And [Dic], Meredith L. Mcpherson, Richard C. Zimmerman, Victoria J. Hill
OES Faculty Publications
Isotopic discrimination against 13C during photosynthesis is determined by a combination of environmental conditions and physiological mechanisms that control delivery of CO2 to RUBISCO. This study investigated the effects of light, flow, dissolved inorganic carbon (DIC) concentration, and its speciation, on photosynthetic carbon assimilation of Zostera marinaL. (eelgrass) using a combination of laboratory experiments and theoretical calculations leading to a mechanistic understanding of environmental conditions that influence leaf carbon uptake and determine leaf stable carbon isotope signatures δ13C. Photosynthesis was saturated with respect to flow at low velocity ~ 3 cm s-1, but …
Understanding Ocean Acidification Impacts On Organismal To Ecological Scales,
2015
Old Dominion University
Understanding Ocean Acidification Impacts On Organismal To Ecological Scales, Andreas J. Andersson, David I. Kline, Peter J. Edmunds, Stephen D. Archer, Nina Bednarsek, Robert C. Carpenter, Meg Chadsey, Philip Goldstein, Andrea G. Grottoli, Thomas P. Hurst, Andrew L. King, Janet E. Kübler, Ilsa B. Kuffner, Katherine R.M. Mackey, Bruce A. Menge, Adina Paytan, Ulf Riebesell, Astrid Schnetzer, Mark E. Warner, Richard C. Zimmerman
OES Faculty Publications
Ocean acidification (OA) research seeks to understand how marine ecosystems and global elemental cycles will respond to changes in seawater carbonate chemistry in combination with other environmental perturbations such as warming, eutrophication, and deoxygenation. Here, we discuss the effectiveness and limitations of current research approaches used to address this goal. A diverse combination of approaches is essential to decipher the consequences of OA to marine organisms, communities, and ecosystems. Consequently, the benefits and limitations of each approach must be considered carefully. Major research challenges involve experimentally addressing the effects of OA in the context of large natural variability in seawater …
New Tracer To Estimate Community Predation Rates Of Phagotrophic Protists,
2015
Old Dominion University
New Tracer To Estimate Community Predation Rates Of Phagotrophic Protists, Alexander B. Bochdansky, Melissa A. Clouse
OES Faculty Publications
Predation of eukaryotic microbes on prokaryotes is one of the most important trophic interactions on Earth, representing a major mortality term and shaping morphology and composition of prokaryotic communities. Here we introduce and validate a new tracer to determine predation rates on prokaryotes. Minicells of Escherichia coli marked with a bright green fluorescent protein (GFP) vector have many operational advantages over previously used prey analogs such as fluorescently labeled bacteria. GFP-minicells are similar in size to naturally occurring bacteria from a variety of environments including the oligotrophic open ocean and the deep sea. They are relatively stable against microbial and …
Iron Deficiency Increases Growth And Nitrogen-Fixation Rates Of Phosphorus-Deficient Marine Cyanobacteria,
2015
Old Dominion University
Iron Deficiency Increases Growth And Nitrogen-Fixation Rates Of Phosphorus-Deficient Marine Cyanobacteria, Nathan S. Garcia, Feixue Fu, Peter N. Sedwick, David A. Hutchins
OES Faculty Publications
Marine dinitrogen (N2)-fixing cyanobacteria have large impacts on global biogeochemistry as they fix carbon dioxide (CO2) and fertilize oligotrophic ocean waters with new nitrogen. Iron (Fe) and phosphorus (P) are the two most important limiting nutrients for marine biological N2 fixation, and their availabilities vary between major ocean basins and regions. A long-standing question concerns the ability of two globally dominant N2-fixing cyanobacteria, unicellular Crocosphaera and filamentous Trichodesmium, to maintain relatively high N2-fixation rates in these regimes where both Fe and P are typically scarce. We show that under P-deficient …
Feasibility Of Using Biofuel By-Products As A Sustainable Nutritional Resource For Aquaculture Production Of Litopenaeus Vannamei,
2015
Nova Southeastern University
Feasibility Of Using Biofuel By-Products As A Sustainable Nutritional Resource For Aquaculture Production Of Litopenaeus Vannamei, Erik David Demicco
HCNSO Student Theses and Dissertations
Many different algal species can provide an acceptable protein ingredient, with good digestibility, for shrimp feeds. Compared to fish meal, similar protein, carbohydrate, and lipid levels can be found in select algal species. Traditional shrimp diets in aquaculture rely on fish meal and fish oil from pelagic fish fisheries. A reduction or elimination of these ingredients would reduce the dependency of shrimp aquaculture on offshore fisheries and increase economic competiveness. Biofuel production produces algal by-products of potential use to aquaculturists that might reduce or eliminate the need for fisheries products in shrimp feed. Established uses for by-products from biofuel production …
The Role Of Citizens In Detecting And Responding To A Rapid Marine Invasion,
2015
Northeastern University
The Role Of Citizens In Detecting And Responding To A Rapid Marine Invasion, Steven B. Scyphers, Sean P. Powers, J. Lad Akins, J. Marcus Drymon, Charles W. Martin, Zeb H. Schobernd, Pamela J. Schofield, Robert L. Shipp, Theodore S. Switzer
University Faculty and Staff Publications
Documenting and responding to species invasions requires innovative strategies that account for ecological and societal complexities. We used the recent expansion of Indo-Pacific lionfish (Pterois volitans/miles) throughout northern Gulf of Mexico coastal waters to evaluate the role of stakeholders in documenting and responding to a rapid marine invasion. We coupled an online survey of spearfishers and citizen science monitoring programs with traditional fishery-independent data sources and found that citizen observations documented lionfish 1–2 years earlier and more frequently than traditional reef fish monitoring programs. Citizen observations first documented lionfish in 2010 followed by rapid expansion and proliferation in …
The Role Of Artificial Structures In Facilitating Range Expansion Of The Introduced Barnacle Megabalanus Coccopoma In The Southeastern U.S.A.,
2015
Georgia Southern University
The Role Of Artificial Structures In Facilitating Range Expansion Of The Introduced Barnacle Megabalanus Coccopoma In The Southeastern U.S.A., Alicia M. Reigel
College of Graduate Studies: Theses & Dissertations
The barnacle Megabalanus coccopoma is a recent invader of the southeastern U.S.A. from the tropical eastern Pacific. In Georgia, M. coccopoma populations along the immediate coastline often suffer extensive mortality during the winter, but population rebuilding is common after these events suggesting that there may be nearby larval sources. I investigated the hypothesis that artificial structures (i.e., buoys, towers), occurring far enough offshore of Georgia for water temperatures to be moderated by the Gulf Stream, provide refuges for breeding adults of M. coccopoma and can serve as the larval source. I investigated this hypothesis by first developing thirteen microsatellite primer …
Habitat Utilization And Vertical Distribution Of The Great Barracuda Sphyraena Barracuda (Edwards 1771) In The Western North Atlantic Using Electronic Archival Tags,
2015
Nova Southeastern University
Habitat Utilization And Vertical Distribution Of The Great Barracuda Sphyraena Barracuda (Edwards 1771) In The Western North Atlantic Using Electronic Archival Tags, Noah R. Hansen, David W. Kerstetter
Gulf and Caribbean Research
The Great Barracuda Sphyraena barracuda is a large predatory teleost commonly seen in the tropics of the Western North Atlantic. Using pop-up satellite archival tags (PSATs), two large Great Barracuda (101 and 104 cm FL) were tagged off South Florida for a 15-day deployment period. Great Barracuda 88094 traveled 471 km minimum straight-line distance (MSLD) over the deployment duration, while Great Barracuda 88095 traveled 1231 km MSLD. Great barracuda 88094 achieved a maximum depth of 145.2 m, while 88095 to a maximum depth of 186.9 m, although such movements were for short time durations. The data obtained indicate significant differences …
Ecological Drivers And Habitat Associations Of Estuarine Bivalves,
2015
Old Dominion University
Ecological Drivers And Habitat Associations Of Estuarine Bivalves, C. Seabird Mckeon, Björn G. Tunberg, Cora A. Johnston, Daniel J. Barshis
Biological Sciences Faculty Publications
Community composition of the infaunal bivalve fauna of the St. Lucie Estuary and southern Indian River Lagoon, eastern Florida was sampled quarterly for 10 years as part of a long-term benthic monitoring program. A total of 38,514 bivalves of 137 taxa were collected and identified. We utilized this data, along with sediment samples and environmental measurements gathered concurrently, to assess the community composition, distribution, and ecological drivers of the infaunal bivalves of this estuary system. Salinity had the strongest influence on bivalve assemblage across the 15 sites, superseding the influences of sediment type, water turbidity, temperature and other environmental parameters. …
Flow Through The Nasal Cavity Of The Spiny Dogfish, Squalus Acanthias,
2015
Texas A & M University - Galveston
Flow Through The Nasal Cavity Of The Spiny Dogfish, Squalus Acanthias, L. L. Timm-Davis, Frank E. Fish
Biology Faculty Publications
The nasal cavity of spiny dogfish is a blind capsule with no internal connection to the oral cavity. Water is envisioned to flow through the cavity in a smooth, continuous flow pattern; however, this assumption is based on previous descriptions of the morphology of the olfactory cavity. No experimentation on the flow through the internal nasal cavity has been reported. Morphology of the head of the spiny dogfish (Squalus acanthias) does not suggest a close external connection between the oral and nasal systems. However, dye visualization showed that there was flow through the nasal apparatus and from the excurrent nostril …
Acclimation, Adaptation, Traits And Trade-Offs In Plankton Functional Type Models: Reconciling Terminology For Biology And Modelling,
2015
Old Dominion University
Acclimation, Adaptation, Traits And Trade-Offs In Plankton Functional Type Models: Reconciling Terminology For Biology And Modelling, Kevin J. Flynn, Michael St. John, John A. Raven, David O. F. Skibinski, J. Icarus Allen, Aditee Mitra, Eileen E. Hofmann
CCPO Publications
We propose definitions in terminology to enhance ongoing collaborations between biologists and modellers on plankton ecology. Organism "functional type" should refer to commonality in ecology not biogeochemistry; the latter is largely an emergent property of the former, while alignment with ecology is also consistent with usage in terrestrial science. Adaptation should be confined, as in genetics, to consideration of species inter-generational change; most so-called "adaptive" plankton models are thus acclimative, modifying vital rates in response to stimuli. Trait trade-off approaches should ideally only be considered for describing intra-generational interactions; in applications between generations, and certainly between unrelated species, such concepts …
Types Of Ampullariidae (Mollusca: Gastropoda) In The National Museum Of Natural History, Smithsonian Institution, With Lectotype Designations,
2015
Howard University
Types Of Ampullariidae (Mollusca: Gastropoda) In The National Museum Of Natural History, Smithsonian Institution, With Lectotype Designations, Robert Cowie, Kenneth Hayes, Ellen Strong
Department of Biology Faculty Publications
Cowie, Robert H., Kenneth A. Hayes, and Ellen E. Strong. Types of Ampullariidae (Mollusca: Gastropoda) in the NationalMuseum of Natural History, Smithsonian Institution, with Lectotype Designations. Smithsonian Contributions to Zoology, number 645, iv + 13 pages, 1 figure, 2015.—The caenogastropod family Ampullariidae Gray, 1824, is a family of freshwater snails predominantly distributed in humid tropical and subtropical habitats in Africa, South and Central America, and Asia. The family includes the largest of all freshwater snails and frequently constitutes a major portion of the native freshwater malacofauna of these regions. Ampullariid taxonomy is confused primarily because most species were described on …
The Effect Of Parental Size On Spermatophore Production, Egg Quality, Fertilization Success, And Larval Characteristics In The Caribbean Spiny Lobster, Panulirus Argus,
2015
Old Dominion University
The Effect Of Parental Size On Spermatophore Production, Egg Quality, Fertilization Success, And Larval Characteristics In The Caribbean Spiny Lobster, Panulirus Argus, Mark J. Butler Iv, Alison Macdiarmid, Gaya Gnanalingam
Biological Sciences Faculty Publications
The average size of spiny lobsters (Decapoda; Palinuridae) has decreased worldwide over the past few decades. Market forces coupled with minimum size limits compel fishers to target the largest individuals. Males are targeted disproportionately as a consequence of sexual dimorphism in spiny lobster size (i.e. males grow larger than females) and because of protections for ovigerous females. Therefore, overexploitation of males has led to sperm limitation in several decapod populations with serious repercussions for reproductive success. In the Caribbean spiny lobster, Panulirus argus, little is known about the effect of reduced male size on fertilization success or the role …
A Hydrographic Climatology Of The Gulf Of St. Lawrence,
2015
University of South Carolina - Columbia
A Hydrographic Climatology Of The Gulf Of St. Lawrence, Alejandro Frank
Theses and Dissertations
The Gulf of St. Lawrence (GSL) is characterized by a general circulation of an estuarine type, where fresher/lighter water flows seaward above saltier/heavier water flowing landward. In an estuarine regime, the inflowing deep layer water compensate for a loss of mass due to the surface layer outflow. A major element of the GSL estuarine circulation is the coastal buoyancy-driven current fed by the St. Lawrence River discharge. In addition, some surface water is advected into the GSL as a branch of the Labrador Current (LC). Recent climatological changes in the North Atlantic have increased the melting rate of the Greenland …
