Marine Biology Commons^™

Freshwater Mussels Of Virginia (Bivalvia: Unionidae): An Introduction To Their Life History, Status And Conservation, Jess W. Jones

Virginia Journal of Science

With 77 species, the mussel fauna of Virginia is one of the most diverse in the United States. Fifty-four species or ~70% of the state’s mussel fauna occurs in the rivers of the upper Tennessee River basin, especially in the Clinch and Powell rivers of southwestern Virginia. An additional 23 species reside in rivers of the Atlantic Slope, including the Potomac, Rappahannock, York, James and Chowan basins, and in the New River, a major tributary to the Ohio River. A total of 39 species or 51% of Virginia’s mussel fauna is listed as federally endangered, state endangered or state threatened. …

Detection Of Floating Oil Anomalies From The Deepwater Horizon Oil Spill With Synthetic Aperture Radar, Oscar Garcia-Pineda, Ian Macdonald, Chuanmin Hu, Jan Svejkovsky, Mark Hess, Dmitry Dukhovskoy, Steven L. Morey

C-IMAGE Publications

Detection of oil floating on the ocean surface, and particularly thick layers of it, is crucial for emergency response to oil spills. While detection of oil on the ocean surface is possible under moderate sea-state conditions using a variety of remote-sensing methods, estimation of oil layer thickness is technically challenging. In this paper, we used synthetic aperture radar (SAR) imagery collected during the Deepwater Horizon oil spill and the Texture Classifier Neural Network Algorithm (TCNNA) to identify the spill’s extent. We then developed an oil emulsion detection algorithm using TCNNA outputs to enhance the contrast of pixels within the oil …

Introduction To The Symposium-Unsteady Aquatic Locomotion With Respect To Eco-Design And Mechanics, Frank E. Fish, Paolo Domenici

Biology Faculty Publications

No abstract provided.

Kinematics And Hydrodynamics Of Cephalopod Turning Performance In Routine Swimming And Predatory Attacks, Rachel A. Jastrebsky

Biological Sciences Theses & Dissertations

Steady rectilinear swimming has received considerable attention in aquatic animal locomotion studies. Unsteady swimming movements, however, represent a large portion of many aquatic animals’ locomotive repertoire and have not been examined extensively. This study incorporates kinematic analyses of routine turning performance of brief squid Lolliguncula brevis and dwarf cuttlefish Sepia bandensis (Chapter 2), 3D velocimetry techniques to examine hydrodynamic turning performance of L. brevis (Chapter 3) and kinematic analyses of turning performance of L. brevis during predatory attacks on shrimp and fish prey (Chapter 4).

Both L. brevis and S. bandensis demonstrated high maneuverability, having the lowest measures of length-specific …

Jane Claire Dirks-Edmunds's Notes On Lake Atitlán, Guatemala, Jane Claire Dirks-Edmunds

Jane Claire Dirks-Edmunds Documents

This document includes typed and handwritten notes from Dr. Jane Claire Dirks-Edmunds about Lake Atitlán, a large body of water in Guatemala surrounded by three volcanoes. During the 1970s, Dirks-Edmunds conducted research with others on various aspects of the inland Guatemalan system.

Using Fish Population Metrics To Compare The Effects Of Artificial Reef Density, Catheline Y. M. Froehlich, Richard Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

Artificial reefs continue to be added as habitat throughout the world, yet questions remain about how reef design affects fish diversity and abundance. In the present study, the effects of reef density were assessed for fish communities and sizes of economically valuable Lutjanus campechanus 13 km off Port Mansfield, Texas, at a reef composed of more than 4000 concrete culverts. The study spanned from May to June in 2013 and 2014, and sites sampled included natural reefs, bare areas, and varying culvert patch density categories, ranging from 1–190 culverts. Abundances of adults and species evenness of juvenile populations differed between …

Reproductive Constraints Influence Habitat Accessibility, Segregation, And Preference Of Sympatric Albatross Species, Michelle Kappes, Scott Shaffer, Yann Tremblay, David Foley, Daniel Palacios, Steven Bograd, Daniel Costa

Faculty Publications, Biological Sciences

The spatiotemporal distribution of animals is dependent on a suite of factors, including the distribution of resources, interactions within and between species, physiological limitations, and requirements for reproduction, dispersal, or migration. During breeding, reproductive constraints play a major role in the distribution and behavior of central place foragers, such as pelagic seabirds. We examined the foraging behavior and marine habitat selection of Laysan (Phoebastria immutabilis) and black-footed (P. nigripes) albatrosses throughout their eight month breeding cycle at Tern Island, Northwest Hawaiian Islands to evaluate how variable constraints of breeding influenced habitat availability and foraging decisions. We used satellite tracking and …

Shadowed By Scale: Subtle Behavioral Niche Partitioning In Two Sympatric, Tropical Breeding Albatross Species, Melinda Conners, Elliott Hazen, Daniel Costa, Scott A. Shaffer

Faculty Publications, Biological Sciences

Background To meet the minimum energetic requirements needed to support parents and their provisioned offspring, the timing of breeding in birds typically coincides with periods of high food abundance. Seasonality and synchrony of the reproductive cycle is especially important for marine species that breed in high latitudes with seasonal booms in ocean productivity. Laysan and black-footed albatrosses breeding in the northwestern Hawaiian Islands have a dual reliance on both seasonally productive waters of high latitudes and on nutrient-poor waters of low latitudes, because their foraging ranges contract during the short but critical brood-guard stage. Therefore, these species face an additional …

A Scientific Basis For Regulating Deep-Sea Fishing By Depth, Jo Clarke, Rosanna Milligan, David M. Bailey, Francis Neat

Marine & Environmental Sciences Faculty Articles

The deep sea is the world’s largest ecosystem, with high levels of biodiversity and many species that exhibit life-history characteristics thatmake them vulnerable to high levels of exploitation. Many fisheries in the deep sea have a track record of being unsustainable. In the northeast Atlantic, there has been a decline in the abundance of commercial fish species since deep-sea fishing commenced in the 1970s. Current management is by effort restrictions and total allowable catch (TAC), but there remain problems with compliance and high levels of bycatch of vulnerable species such as sharks. The European Union is currently considering new legislation …

Coastal Sediment Elevation Change Following Anthropogenic Mangrove Clearing, Heather Lyn Hayden, Elise F. Granek

Environmental Science and Management Faculty Publications and Presentations

Coastal mangrove forests along tropical shorelines serve as an important interface between land and sea. They provide a physical buffer protecting the coastline from erosion and act as sediment “traps” catching terrestrial sediment, thus preventing smothering of subtidal coral reefs. Coastal development that removes mangrove habitat may impact adjacent nearshore coral reefs through sedimentation and nutrient loading. We examined differences in sediment elevation change between patches of open-coast intact and anthropogenically cleared red mangroves (Rhizophora mangle) on the east side of Turneffe Atoll, Belize, to quantify changes following mangrove clearing. Samples were collected over a 24 month period at five …

Recreational Diving And Hawksbill Sea Turtles (Eretmochelys Imbricata) In A Marine Protected Area, Christian Hayes

Loma Linda University Electronic Theses, Dissertations & Projects

Recreational diving is a form of ecotourism that is traditionally viewed as an ecologically sustainable activity prompting increased awareness for the marine environment. Recent studies, however, indicate that recreational diving may cause unintended behavioral changes in marine macrofauna. Few studies, however, have specifically investigated the effects of recreational diving on sea turtles. I conducted in-water observations and turtle sightings surveys from June 9 to August 21, 2014, in Roatán, Honduras, to determine if differences in dive site use and diver behavior alter the behavior of critically endangered hawksbill sea turtles (Eretmochelys imbricata) in a marine protected area (MPA). I found …

Multi-Stress Proteomics: The Global Protein Response To Multiple Environmental Stressors In The Porcelain Crab Petrolisthes Cinctipes, Michael A. Garland

Master's Theses

Global climate change is increasing the number of hot days along the California coast as well as increasing the incidence of off-shore upwelling events that lower the pH of intertidal seawater; thus, intertidal organisms are experiencing an increase in more than one stress simultaneously. This study seeks to characterize the global protein response of the eurythermal porcelain crab Petrolisthes cinctipes to changes in thermal, pH, and tidal regime treatments, either combined or individually. The first experiment examined temperature stress alone and sought to determine the effect of chronic temperature acclimation on the acute heat shock response. We compared the proteomic …

Southeast Florida Coral Reef Fishery-Independent Baseline Assessment, Kirk Kilfoyle, Brian K. Walker, Dana P. Fisco, Steven G. Smith, Richard E. Spieler

Marine & Environmental Sciences Faculty Reports

Reef fishes are important biologic, ecologic, and economic resources of the marine ecosystem which must be managed for sustainability. Until recently, there was no long-term monitoring program in place to assess the condition of reef fish resources of the northern Florida Reef Tract (FRT) (northern Miami-Dade, Broward, Palm Beach, and Martin counties). An assessment/monitoring plan for the northern portion of the Florida reef tract was designed through a joint cooperative effort by scientists at the University of Miami, Rosenstiel School of Marine and Atmospheric Science (RSMAS), National Oceanic and Atmospheric Administration (NOAA)-Southeast Fisheries Science Center (SEFSC) and Nova Southeastern University …

Arctic Horizons: Educating The Professional Mariner For High Latitude Stewardship, Nathan Gandy

ShipArc 2015 Conference

No abstract provided.

A Phylogenetic Revision Of Superfamily Himerometroidea (Echinodermata: Crinoidea), Kristian Taylor

HCNSO Student Theses and Dissertations

Superfamily Himerometroidea AH Clark, 1908 (Echinodermata: Crinoidea) (formerly Mariametroidea) is the second most speciose superfamily in order Comatulida. Although it includes some of the most common species on tropical western Pacific reefs, its phylogeny is poorly understood. Genus- to species-level taxa are currently distinguished by plastic morphological characters. We revised the superfamily from species- to family-levels using a combined morphological and molecular approach. A phylogeny using two nuclear and three mitochondrial markers recovered Colobometridae and Himerometridae as paraphyletic and Mariametridae and Zygometridae as polyphyletic. Within genus Himerometra (Himerometridae), sequence data and detailed morphological examinations of multiple specimens of H. magnipinna, …

Leucothoe Eltoni Sp. N., A New Species Of Commensal Leucothoid Amphipod From Coral Reefs In Raja Ampat, Indonesia (Crustacea, Amphipoda), James Darwin Thomas

Marine & Environmental Sciences Faculty Articles

A new species of leucothoid amphipod, Leucothoe eltoni sp. n., is described from coral reefs in Raja Ampat, Indonesia where it inhabits the branchial chambers of solitary tunicates. With an inflated first gnathopod superficially resembling the genus Paraleucothoe, this new species has a two-articulate maxilla 1 palp characteristic of the genus Leucothoe. While described from coral reef environments in tropical Indonesia and the Philippines, it is an established invasive species in the Hawaiian Islands. The most likely mode of introduction was a US Navy dry dock transported to Pearl Harbor in 1992 from Subic Bay, Philippines.

Large Amplitude, Short Wave Peristalsis And Its Implications For Transport, Lindsay D. Waldrop, Laura A. Miller

Biology, Chemistry, and Environmental Sciences Faculty Articles and Research

Valveless, tubular pumps are widespread in the animal kingdom, but the mechanism by which these pumps generate fluid flow is often in dispute. Where the pumping mechanism of many organs was once described as peristalsis, other mechanisms, such as dynamic suction pumping, have been suggested as possible alternative mechanisms. Peristalsis is often evaluated using criteria established in a technical definition for mechanical pumps, but this definition is based on a small-amplitude, long-wave approximation which biological pumps often violate. In this study, we use a direct numerical simulation of large-amplitude, short-wave peristalsis to investigate the relationships between fluid flow, compression frequency, …

Sound Production And Associated Behavior Of Tagged Fin Whales (Balaenoptera Physalus) In The Southern California Bight, Alison K. Stimpert, Stacy L. Deruiter, Erin A. Falcone, John Joseph

University Faculty Publications and Creative Works

For marine animals, acoustic communication is critical for many life functions, yet individual calling behavior is poorly understood for most large whale species. These topics are important for understanding whale social behavior and can also serve as a baseline for behavioral studies assessing whale response to disturbance. Using a new technique for identifying the calling individual, we measured body orientation, dive behavior, and surface social behavior in relation to call production for tagged fin whales in Southern California. Results: Behavioral metrics associated with elevated call rates included shallow maximum dive depths (10-15m), little body movement, negative pitch in body orientation, …

Do Marine Protected Areas Affect Emerging Fisheries Population Density?, Jennifer Greene, Katherine O. Grady, Crow White, Danielle Zacherl

STAR Program Research Presentations

Kellet’s whelk, Kelletia kelletii, were observed at sample sites throughout their range from Baja California, Mexico, to Monterey, CA to determine patterns of population density. Sample sites in each region were either located within California marine protected areas where take of the Kellet’s whelk in prohibited, or in non-protected areas where the whelks can be fished both commercially and recreationally. Kellet’s whelk population density was compared between all MPA and non-MPA sample sites. These mean densities were also found for sites in Santa Barbara and San Diego near active fishing ports and compared to data from the same sites collected …

Using High Throughput Genomic Sequencing To Predict Ecological Impacts On Sea Turtle Populations, Lesley Anderson

STAR Program Research Presentations

Marine turtles are long-lived, migratory vertebrates that encounter a variety of human and natural stressors throughout their lives. Understanding the biology and threats of these animals is challenging because they are hard to observe, and can migrate across whole ocean basins. Minimally invasive sampling techniques (e.g., blood samples) allow us to learn about their physiology, genetics, and the environmental conditions they have experienced. In this project, we developed a novel method to extract the RNA from whole green and loggerhead turtle blood from animals inhabiting a variety of sites across the Pacific Ocean. Some habitats are more pristine, while others …