Marine Biology Commons^™

You Can't Catch A Fish With A Robot, R. Grant Gilmore Jr.

Gulf and Caribbean Research

Abstract

In this essay I will relate the challenges associated with deep sea ocean exploration as well as the advantages and disadvantages of today’s ocean technologies based on experience with most of these systems. After nearly five decades using robotic vehicles (Remotely Operated Vehicles = ROVs and Autonomous Underwater Vehicles = AUVs) and manned submarines for fish research, I thought it would be appropriate to briefly describe a career spent using these technologies as they were developed. Deep sea ichthyologists cannot effectively catch a swimming fish with a robot even 40 years after the development of the first ROV for …

Age, Growth And Natural Mortality Of Blackfin Snapper Lutjanus Buccanella From The Southeastern United States And U. S. Caribbean, Michael L. Burton, Jennifer C. Potts, Daniel R. Carr

Gulf and Caribbean Research

We determined ages of Blackfin Snapper (Lutjanus buccanella Cuvier 1828; n = 622) collected from the southeastern United States coast and U.S. Caribbean from 1979–2015 using sectioned sagittal otoliths. Opaque zones were determined to be annular, forming March – July (peaking in April–June). Blackfin Snapper ranged from 1–27 years and from 180–609 mm total length (TL). Body size relationships for Blackfin Snapper were: TL = 1.09 FL + 0.81 (n = 203, r2 = 0.99); FL = 0.91 TL + 3.38 (n = 203, r2 = 0.99); TL = 1.23 SL + 14.27 (n = 83, r2 = 0.97); FL …

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2016, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Nisse Goldberg, Radha Pyati, Peter Bacopoulos, Anthony Ouellette, Gretchen Bielmyer-Fraser, An-Phong Le, Ray Oldakowski

State of the River Report

No abstract provided.

Natural Cultch Type Influences Habitat Preference And Predation, But Not Survival, In Reef-Associated Species, Erica A. Levine, Stephen Gosnell J., Emily M. Goetz, Christopher R. Malinowski

Publications and Research

A shared origin with fresh and dredged cultch and availability via mining have made fossil cultch a commonly used reef restoration substrate. However, important differences in shape and size between whole-shell cultch and fossil cultch may impact the complexity of reefs constructed from these materials. To determine if these differences may impact the development of restored reefs, we quantified the interstitial space each cultch type provides and constructed reef mesocosms to measure (1) the immediate effects of exposure to each cultch type on mortality of blue crab (Callinectes sapidus) and pink shrimp (Farfantepenaeus duorarum); (2) the …

Applicability Of Lidar Technology In Saltmarshes: Landscape-Scale Predictive Models To Local-Scale Biomass Estimation, James Dean Edwards Jr.

Theses and Dissertations

The management of saltmarshes requires detailed knowledge of the underlying processes driving their distribution in both time and space to make appropriate management decisions. With most of the world’s population living in the coastal zone and rising sea levels, one of our most important natural resources in the coastal zone faces increasing threat of collapse. This study uses the current state of Light Detection and Ranging (LiDAR) technology to model and predict saltmarsh distribution at a landscape-scale and provide evidence that a terrestrial laser scanner (TLS) can be used to estimate saltmarsh biomass for inclusion into existing models.

Land cover …

The Effect Of Depth On Development And Sexual Dimorphism Of The Sonic System In Deep Sea Neobythitine Fishes: The Upper Continental Slope, Heba Ali

Theses and Dissertations

Abstract

Background: Cusk-eels from the subfamily Neobythiitinae are one of the major groups of sound-producing fishes on the continental slope. Sounds have never been recorded from a member of this subfamily, and sonic anatomy is considered a proxy for sound production. As the first part of a study on the effects of depth on sonic anatomy, we examined three relatively shallow species from the upper continental slope.

Methods: Three species (Hoplobrotula armata, Neobythites longipes and Neobythites unimaculatus) were examined for sonic anatomy (skeleton, swimbladder and sonic muscles), and sonic and epaxial muscle fibers were measured for diameter. …

Biodegradation Of Highly Weathered Deepwater Horizon Oil, Joel T. Bostic

Theses and Dissertations

Oil from the Deepwater Horizon (DwH) spill continues to be found on beaches five years post-spill. Understanding the role of microbes in removing DwH oil from sandy beaches is necessary to elucidate the fate of DwH oil in the coastal zone. Oiled sand patties and non-oiled sand were collected from affected beaches five years post- DwH. Biomarkers in oiled sand indicated that sand patties originated from the DwH spill, however the oil was heavily weathered and dominated by oxygenated hydrocarbons. Microbial communities, as measured by phospholipid fatty acids (PLFA), were present on oiled sand patties and distinct from microbes on …

Decadal Salinity Changes In The Oceanic Subtropical Gyres And Connection To Changes In The Global Water Cycle, Bryce Andrew Melzer

Theses and Dissertations

There is evidence that the global water cycle has been undergoing an intensification over several decades as a response to increasing atmospheric temperatures, particularly in regions with skewed evaporation – precipitation (E-P) patterns such as the oceanic subtropical gyres. However, observational data (rain gauges, etc.) can be quite sparse over such areas due to the inaccessibility of open ocean regions. This study utilizes in situ data, reanalysis, and model outputs to infer interannual to decadal scale trends in surface freshwater forcing within remote, evaporation-dominated subtropical regions of the ocean as they pertain to the past and present state of the …

Development And Application Of Foraminiferal Carbonate System Proxies To Quantify Ocean Acidification In The California Current, Emily B. Osborne

Theses and Dissertations

The oceanic uptake of anthropogenic carbon has mitigated climate change, but has also resulted in a global average 0.1 decline in surface ocean pH over 20th century known as ocean acidification. The parallel reduction in carbonate ion concentration ([CO32-]) and the saturation state of seawater (Ω) has caused many major calcium carbonate-secreting organisms such as planktonic foraminifera to exhibit impaired calcification. We develop proxy calibrations and down core records that use calcification and geochemical characteristics of planktonic foraminifera as proxies for the marine carbonate system. This study focuses specifically on the surface ocean chemistry of the California Current Ecosystem (CCE), …

Mislabeling Of Commercial Atlantic Cod (Gadus Morhua) Products In Spain, Joshua Helgoe

Theses and Dissertations

The mislabeling of commercial fish products is a pervasive, worldwide problem. Most consumers of seafood are unaware this issue directly affects them and can even have negative impacts on their health. Mislabeling occurs when a product’s label is inconsistent with its content. Although mislabeling can be unintentional, deliberate mislabeling is a more common trend to increase profits and/or bypass fishing regulations - a form of economic fraud. Unfortunately, oversight, enforcement, and research are vastly insufficient in relation to the global scale of the problem. In order to add to the small knowledge base on European mislabeling rates, determine if overfished …

Beyond Just Sea-Level Rise: Considering Macroclimatic Drivers Within Coastal Wetland Vulnerability Assessments To Climate Change, Michael J. Osland, Nicholas M. Enwright, Richard H. Day, Christopher A. Gabler, Camille L. Stagg, James B. Grace

School of Earth, Environmental, & Marine Sciences Faculty Publications

Due to their position at the land-sea interface, coastal wetlands are vulnerable to many aspects of climate change. However, climate change vulnerability assessments for coastal wetlands generally focus solely on sea-level rise without considering the effects of other facets of climate change. Across the globe and in all ecosystems, macroclimatic drivers (e.g., temperature and rainfall regimes) greatly influence ecosystem structure and function. Macroclimatic drivers have been the focus of climate change-related threat evaluations for terrestrial ecosystems, but largely ignored for coastal wetlands. In some coastal wetlands, changing macroclimatic conditions are expected to result in foundation plant species replacement, which would …

Responses To Familiar And Unfamiliar Humans By Belugas (Delphinapterus Leucas), Bottlenose Dolphins (Tursiops Truncatus), & Pacific White-Sided Dolphins (Lagenorhynchus Obliquidens): A Replication And Extension, Heather M. Hill, Deirdre Yeater, Sarah Gallup, Sara Guarino, Steve Lacy, Tricia Dees, Stan A. Kuczaj Ii

Psychology Faculty Publications

Previous research has documented that cetaceans can discriminate between humans, but the process used to categorize humans still remains unclear. The goal of the present study was to replicate and extend previous work on the discrimination between familiar and unfamiliar humans by three species of cetaceans. The current study manipulated the familiarity and activity level of humans presented to 12 belugas (Delphinapterus leucas) housed between two facilities, five bottlenose dolphins (Tursiops truncatus), and six Pacific white-sided dolphins (Lagenorhynchus obliquidens) during free-swim conditions. Two measures of discrimination were coded from video recordings of each trial: …

Measuring Beach Profiles Along A Low-Wave Energy Microtidal Coast, West-Central Florida, Usa, Jun Cheng, Ping Wang, Qiandong Guo

School of Geosciences Faculty and Staff Publications

Monitoring storm-induced dramatic beach morphology changes and long-term beach evolution provides crucial data for coastal management. Beach-profile measurement using total station has been conducted along the coast of west-central Florida over the last decade. This paper reviews several case studies of beach morphology changes based on total-station survey along this coast. The advantage of flexible and low-cost total-station surveys is discussed in comparison to LIDAR (light detection and ranging) method. In an attempt to introduce total-station survey from a practical prospective, measurement of cross-shore beach profile in various scenarios are discussed, including: (1) establishing a beach profile line with known …

Spatial Biodiversity Patterns Of Fish Within The Aransas Bay Complex, Texas, Bridgette F. Froeschke, Megan M. Reese Robillard, Gregory W. Stunz

Gulf and Caribbean Research

The goal of this study was to consider the effects of habitat type and environmental conditions on the biodiversity of fishes within the Aransas Bay Complex, Texas and provide a management framework and an ecosystem examination of Essential Fish Habitat (EFH). A stratified, randomized experimental design was used to collect fishes from seagrass, oyster, and non-vegetated habitats within the Aransas Bay Complex from February through May 2010 over large spatial scales at the “bay-complex” level. We developed a biodiversity habitat model using Boosted Regression Trees (BRT). Fitted functions from the “best” fit BRT habitat model indicated that fish biodiversity was …

Parasites From The Red Lionfish, Pterois Volitans From The Gulf Of Mexico, Alexander Q. Fogg, Carlos F. Ruiz, Stephen S. Curran, Stephen A. Bullard

Gulf and Caribbean Research

No abstract provided.

The High Cost Of Reproduction In Sea Otters Necessitates Unique Physiological Adaptations, Nicole Thometz, T. L. Kendall, B. P. Richter, T. M. Williams

Biology Faculty Publications

Resting Superimposed on inherently high basal metabolic demands, the additional energetic requirements of reproduction can push female sea otters beyond physiological limits. Indeed, the resulting energy imbalance contributes to disproportionately high rates of mortality at the end of lactation in this species. To examine and quantify metabolic changes associated with reproduction, we measured the resting metabolic rate (RMR) of a female sea otter across gestation, lactation and non-reproductive periods. Concurrently, measurements were made on a non-breeding control female. Our results suggest that RMR declines during gestation. Conversely, RMR increases during lactation, reaches a peak at 3–4 months postpartum, and remains …

Evaluating Climatic Response To External Radiative Forcing During The Late Miocene To Early Pliocene: New Perspectives From Eastern Equatorial Pacific (Iodp U1338) And North Atlantic (Odp 982) Locations, Anna J. Drury, Cédric M. John, Amelia E. Shevenell

Marine Science Faculty Publications

Orbital‐scale climate variability during the latest Miocene‐early Pliocene is poorly understood due to a lack of high‐resolution records spanning 8.0–3.5 Ma, which resolve all orbital cycles. Assessing this variability improves understanding of how Earth's system sensitivity to insolation evolves and provides insight into the factors driving the Messinian Salinity Crisis (MSC) and the Late Miocene Carbon Isotope Shift (LMCIS). New high‐resolution benthic foraminiferal Cibicidoides mundulus δ¹⁸O and δ¹³C records from equatorial Pacific International Ocean Drilling Program Site U1338 are correlated to North Atlantic Ocean Drilling Program Site 982 to obtain a global perspective. Four long‐term benthic …

Resurgence Of Acropora Corals On Mid Shelf Patch Reefs, Southwater Caye Marine Reserve, Central Belize, Jillian J. Keefer

Undergraduate Honors Thesis Projects

Acropora cervicornis (staghorn) and Acropora palmata (elkhorn) are ecologically important corals that grow quickly and provide topography and refuges for fish and invertebrates. Historically, Acropora was the most abundant coral in shallow patch reef zones in the Caribbean. During the 1980s, white band disease eliminated most Acropora causing a loss in rugosity and an increase of macroalgae on many reefs. Although Acropora remains rare throughout most of the Caribbean, this study documents its partial comeback and possible limiting factors in Southwater Caye Marine Reserve (SWCMR), Central Belize. Patch reefs in the reserve averaged 19% live coral cover with A. palmata …

The Contribution Of Marine Aggregate-Associated Bacteria To The Accumulation Of Pathogenic Bacteria In Oysters: An Agent-Based Model, Andrew M. Kramer, J. Evan Ward, Fred C. Dobbs, Melissa L. Pierce

OES Faculty Publications

Bivalves process large volumes of water, leading to their accumulation of bacteria, including potential human pathogens (e.g., vibrios). These bacteria are captured at low efficiencies when freely suspended in the water column, but they also attach to marine aggregates, which are captured with near 100% efficiency. For this reason, and because they are often enriched with heterotrophic bacteria, marine aggregates have been hypothesized to function as important transporters of bacteria into bivalves. The relative contribution of aggregates and unattached bacteria to the accumulation of these cells, however, is unknown. We developed an agent-based model to simulate accumulation of vibrio-type bacteria …

A Highly Sensitive Underwater Video System For Use In Turbid Aquaculture Ponds, Chin-Chang Hung, Shih-Chieh Tsao, Kuo-Hao Huang, Hsu-Kunag Chang, Fred C. Dobbs

OES Faculty Publications

The turbid, low-light waters characteristic of aquaculture ponds have made it difficult or impossible for previous video cameras to provide clear imagery of the ponds' benthic habitat. We developed a highly sensitive, underwater video system (UVS) for this particular application and tested it in shrimp ponds having turbidities typical of those in southern Taiwan. The system's high-quality video stream and images, together with its camera capacity (up to nine cameras), permit in situ observations of shrimp feeding behavior, shrimp size and internal anatomy, and organic matter residues on pond sediments. The UVS can operate continuously and be focused remotely, a …