Marine Biology Commons^™

Predictive Mapping Of Two Nearshore, Demersal Fish Species On Northern California Reefs Using Scuba-Based Visual Surveys And Remote Sensing, Christopher H. Teague

Cal Poly Humboldt theses and projects

California's shallow rocky reefs provide critical habitat for a diverse assemblage of fishes. Effective management strategies for these species require both accurate stock assessments as well as a spatially explicit understanding of the relationship between fishes and characteristics of their habitat. We used a generalized additive model framework to create spatially predictive maps of the abundance and biomass of two demersal fish species prevalent on northern California reefs: lingcod (Ophiodon elongatus) and kelp greenling (Hexagrammos decagrammus). These models incorporated data from SCUBA-based fish and habitat surveys at depths from 12-26 meters as well as measures of …

Characterizing Habitat Preference In Three Nearshore Reef-Associated Fishes Through Collaborative Research, Public Data, And Open Source Software, Ian D. Kelmartin

Cal Poly Humboldt theses and projects

Black rockfish (Sebastes melanops), canary rockfish (S. pinniger), and lingcod (Ophidion elongatus) are important species in Northern California’s nearshore recreational and commercial fisheries. These species are associated with nearshore rocky reefs and are among a suite of species intended to benefit from the establishment of the marine protected area (MPA) network along the Northern California Coast in 2012.

Many aspects of the North Coast’s nearshore ecosystem remain poorly studied, including the spatial distribution and habitat associations of nearshore fish species. This study used data collected from Cape Mendocino State Marine Reserve (SMR), Ten Mile …

Evidence For Extra-Gastric Expression Of The Proton Pump H+/K+ -Atpase In The Gills And Kidney Of The Teleost Oreochromis Niloticus, Ebtesam Barnawi

Theses and Dissertations (Comprehensive)

It is well known that stomach acid secretion by oxynticopeptic cells of the gastric mucosa is accomplished by the H⁺/ K⁺-ATPase (HKA), which is comprised of the HKα1 (gene: atp4a) and HKβ (gene: atp4b) subunits. However, the role of the HKA in extra-gastric organs such as the gill and kidney is less clear especially in fishes. This pump may contribute to active ion and/or acid-base regulation either through direct ion transport or through secondary transport proteins against unfavorable concentration gradients via the energy derived from ATP hydrolysis. In the present work I have demonstrated …

Fate Of Methoprene In Temperate Salt Marsh Ditches Following Aerial Applications, David J. Tonjes, Anne E. Mcelroy, Robin K. Barnes, Dominick V. Ninivaggi, Walter Dawydiak, Gregory T. Greene, Bruce J. Brownawell

Technology & Society Faculty Publications

Aerial applications of liquid methoprene are used in salt marshes to control mosquitoes by preventing adult emergence. Despite concern about toxicity to non-target organisms, little is known about environmental concentrations after applications, nor methoprene's persistence in salt marsh environments. Aqueous and sediment samples were collected from two marshes receiving weekly applications. Aqueous samples were collected as early as 30 minutes after applications and as long as nine days afterwards; sediment samples were taken within hours of application and as long as 19 days post-application. Use of time-of-flight liquid chromatography – mass spectral analysis allowed for ultra low detection limits (0.5 …

Composition Of Dissolved Organic Matter In Pore Waters Of Anoxic Marine Sediments Analyzed By 1h Nuclear Magnetic Resonance Spectroscopy, Christina A. Fox, Hussain A. Abdulla, David J. Burdige, James P. Lewicki, Tomoko Komada

OES Faculty Publications

Marine sediments are globally significant sources of dissolved organic matter (DOM) to the oceans, but the biogeochemical role of pore-water DOM in the benthic and marine carbon cycles remains unclear due to a lack of understanding about the molecular composition of DOM. To help fill this knowledge gap, we used 1H nuclear magnetic resonance (NMR) spectroscopy to examine depth variability in the composition of pore-water DOM in anoxic sediments of Santa Barbara Basin, California Borderland. Proton detected spectra were acquired on whole samples without pre-concentration to avoid preclusion of any DOM components from the analytical window. Broad unresolved resonance (operationally …

Ecological Resilience Indicators For Salt Marsh Ecosystems, Scott T. Allen, Camille L. Stagg, Jorge Brenner, Kathleen L. Goodin, Don Faber-Langendoen, Christopher A. Gabler, Katherine Wirt Ames

School of Earth, Environmental, & Marine Sciences Faculty Publications

Salt marshes are coastal ecosystems within the intertidal zone, characterized by hypoxic, saline, soil conditions and low biodiversity. Low diversity arises from frequent disturbance and stressful conditions (i.e., high salinity and hypoxia), where vegetative reproduction and low competition result in mostly monotypic stands, with some differences in plant community influenced by flooding regime (described below). While there are several types of salt marshes in the Northern Gulf of Mexico (NGoM), ranging from low to high salt marshes and salt flats (Tiner, 2013), Spartina alterniflora–dominated salt marshes in the Coastal and Marine Ecological Classification Standard (CMECS) Low and Intermediate Salt Marsh …

Evaluating Elasmobranch Bycatch And Shark Depredation In The Georgia Shrimp Fishery, Matthew M. Scanlon

College of Graduate Studies: Theses & Dissertations

The Georgia shrimp fishery has seen a dramatic decrease in profit and productivity since the 1980’s due to a number of economic factors. Additional, yet undocumented, pressures on this fishery include interactions between foraging sharks with trawl gear. Fishermen report that sharks frequently bite nets in an attempt to prey on netted fish, resulting in large holes in the gear. Further elasmobranch interactions with trawl gear occur as bycatch; shrimp trawls represent nearly 100% of elasmobranch commercial bycatch in Georgia state waters, the species composition of which is largely unstudied. Shark interactions with nets were detailed through fishery-dependent observations on …

Environmental And Physiological Regulation Of Yellow Stingray Color Change, Theresa Rose Gunn

College of Graduate Studies: Theses & Dissertations

Many reef fishes exhibit dynamic coloration and body patterns that can change under nervous or hormonal control. Several species of benthic sharks and rays likely alter melanin in the skin to provide background matching for camouflage. The yellow stingray (Urobatis jamaicensis) is a benthically-oriented elasmobranch with elaborate spot patterns that provide effective camouflage within its habitats. This patterning, when coupled with the ability to alter melanin in response to background color, could increase background matching effectiveness in these species. The yellow stingray has been anecdotally noted to lighten or darken skin color.However, it is unclear whether this type …

A Marine Heatwave Drives Massive Losses From The World’S Largest Seagrass Carbon Stocks, A. Arias-Ortiz, Oscar Serrano, Pere Masque´, Paul S. Lavery, Ute Mueller, G. A. Kendrick, Mohammad Rozaimi, Alba Esteban, J. W. Fourqurean, N. Marba, Miguel-Angel Mateo, K. Murray, M. J. Rule, C. M. Duarte

Research outputs 2014 to 2021

Seagrass ecosystems contain globally significant organic carbon (C) stocks. However, climate change and increasing frequency of extreme events threaten their preservation. Shark Bay, Western Australia, has the largest C stock reported for a seagrass ecosystem, containing up to 1.3% of the total C stored within the top metre of seagrass sediments worldwide. On the basis of field studies and satellite imagery, we estimate that 36% of Shark Bay’s seagrass meadows were damaged following a marine heatwave in 2010/2011. Assuming that 10 to 50% of the seagrass sediment C stock was exposed to oxic conditions after disturbance, between 2 and 9 …

Remobilization Of Heavy Metals By Mangrove Leaves, Hanan Almahasheer, Oscar Serrano, Carlos M. Duarte, Xabier Irigoien

Research outputs 2014 to 2021

Several studies have been carried out on heavy metal pollution in mangrove ecosystems. However, the role of mangroves in heavy metal remobilization is still relatively unknown. On one side, mangrove woody organs and soils sequester heavy metals for long time periods, but on the other hand, senescence of mangrove leaves may return these metals collected by roots to the upper layers of the soil. Here, we analyzed the concentration of chemical elements (Al, As, Cd, Cr, Cu, Fe, Mn, Mo, Ni, Pb, Sr, V, and Zn) as a function of age in mangrove leaves to understand heavy metals retention by …

Compression And Relaxation Of Fishing Effort In Response To Changes In Length Of Fishing Season For Red Snapper (Lutjanus Campechanus) In The Northern Gulf Of Mexico, Sean P. Powers, Kevin Anson

University Faculty and Staff Publications

A standard method used by fisheries managers to decrease catch and effort is to shorten the length of a fishery; however, data on recreational angler response to this simple approach are surprisingly lacking. We assessed the effect of variable season length on daily fishing effort, measured by using numbers of boat launches per day, anglers per boat, and anglers per day from video observations, in the recreational sector of the federal fishery for red snapper (Lutjanus campechanus) in coastal Alabama. From 2012 through 2017, season length fluctuated from 3 to 40 d. Daily effort, measured by using mean number of …

Modeling Canopy Effect In The Great Lakes Cladophora Model, Ankita Bakshi

Dissertations, Master's Theses and Master's Reports

Cladophora glomerata is a filamentous green alga native to the Great Lakes. However, its nuisance growth in phosphorus rich waters negatively affects the lakes’ aesthetic and water quality. The Great Lakes Cladophora Model (GLCM) v1, developed in 1982, was the first mechanistic model to simulate Cladophora growth basing phosphorus availability and environmental conditions followed by Cladophora Growth Model and GLCM v2. In this study, the light and temperature mediation factors for Cladophora net growth are revised as a necessary step prior to the development of a self-shading algorithm. The concept of a fixed-value, maximum achievable biomass (carrying capacity) employed in …

Altered Environmental Light Drives Retinal Change In The Atlantic Tarpon (Megalops Atlanticus) Over Timescales Relevant To Marine Environmental Disturbance, Lorian E. Schweikert, Michael S. Grace

Ocean Engineering and Marine Sciences Faculty Publications

For many fish species, retinal function changes between life history stages as part of an encoded developmental program. Retinal change is also known to exhibit plasticity because retinal form and function can be influenced by light exposure over the course of development. Aside from studies of gene expression, it remains largely unknown whether retinal plasticity can provide functional responses to short-term changes in environmental light quality. The aim of this study was to determine whether the structure and function of the fish retina can change in response to altered light intensity and spectrum—not over the course of a developmental regime, …

Energy-Rich Mesopelagic Fishes Revealed As A Critical Prey Resource For A Deep-Diving Predator Using Quantitative Fatty Acid Signature Analysis, Chandra Goetsch, Melinda G. Conners, Suzanne M. Budge, Yoko Mitani, William A. Walker, Jeffrey F. Bromaghin, Samantha E. Simmons, Colleen Reichmuth, Daniel P. Costa

Biological Sciences Faculty Publications

Understanding the diet of deep-diving predators can provide essential insight to the trophic structure of the mesopelagic ecosystem. Comprehensive population-level diet estimates are exceptionally difficult to obtain for elusive marine predators due to the logistical challenges involved in observing their feeding behavior and collecting samples for traditional stomach content or fecal analyses. We used quantitative fatty acid signature analysis (QFASA) to estimate the diet composition of a wide-ranging mesopelagic predator, the northern elephant seal (Mirounga angustirostris), across five years. To implement QFASA, we first compiled a library of prey fatty acid (FA) profiles from the mesopelagic eastern North Pacific. Given …

The Spatial Context Of “Winning” In Mpa Network Design: Location Matters, Andrew S. Kough, Claire B. Paris, Mark J. Butler Iv

Biological Sciences Faculty Publications

(First paragraph) Chollett et al. (2017) make the case that a local network of marine protected areas (MPAs) enhances fisheries for Caribbean spiny lobster (Panulirus argus) off the coast of Honduras. However, their simulation focused on one ecoregion where self-recruitment is predicted to be among the highest in the Caribbean (Cowen, Paris, & Srinivasan, 2006). The shallow banks and scattered cays of the Honduran-Nicaraguan Rise, separating the Cayman and Colombian basins, create an obstacle to the powerful southern Caribbean jet (Richardson, 2005), fostering an ideal location for topographically steered eddies and larval retention. Local management,whether based on traditional …

ฤดูสืบพันธุ์และนิเวศวิทยาการกินอาหารของปลาคางคก Allenbatrachus Grunniens (Linnaeus, 1758) บริเวณปากแม่น้ำปราณบุรี จังหวัดประจวบคีรีขันธ์, ทัพประดิษฐ์ มิตรเปรียญ

Chulalongkorn University Theses and Dissertations (Chula ETD)

ปลาคางคกชนิด Allenbatrachus grunniens (Linnaeus, 1758) เป็นปลาน้ำกร่อยชนิดสำคัญและมีความสำคัญต่อระบบนิเวศ ปากแม่น้ำปราณบุรี จังหวัดประจวบคีรีขันธ์ ในอดีตยังไม่มีรายงานทางด้านวิชาการถึงบทบาทและการใช้ประโยชน์ของปลาชนิดนี้ จากบริเวณปากแม่น้ำ การศึกษาครั้งนี้ จึงทำการศึกษาฤดูสืบพันธุ์และนิเวศวิทยาการกินอาหารของปลาคางคกชนิด A. grunniens บริเวณปากแม่น้ำปราณบุรี โดยทำการเก็บตัวอย่างปลาชนิดนี้ (จำนวน 111 ตัว) จาก 5 สถานี (St1-St5) ระหว่างเดือนพฤศจิกายน พ.ศ. 2559 ถึง เดือนตุลาคม พ.ศ. 2560 ผลการศึกษาพบว่าการกระจายตัวของปลา A. grunniens สามารถพบได้แค่ 2 สถานี (St4 และ St5) เท่านั น ขณะที่ปลา A. grunniens ความยาวเหยียดเฉลี่ย 17.46±3.53 เซนติเมตร ข้อมูลทางด้านสัณฐานวิทยาและมิญชวิทยาแสดงให้เห็นว่าโครงสร้างของรังไข่จัดเป็นแบบไข่สุก ไม่พร้อมกัน (asynchronous development ovary) เนื่องจากประกอบด้วยเซลล์ไข่หลากหลายระยะ ที่สามารถแบ่งออกเป็น 4 ระยะ คือ โอ โอโกเนีย ระยะการเจริญของการพัฒนาเซลล์ไข่ขั้นปฐมภูมิ ระยะการเจริญของการพัฒนาเซลล์ไข่ขั้นทุติยภูมิ และระยะปล่อยเซลล์ไข่ ในขณะที่โครงสร้างอัณฑะในปลาเพศผู้จัดเป็น unrestricted spermatogonial testis ที่สามารถพบการกระจายของระยะสเปอร์มาโทโกเนียมตลอด ความยาวของท่อสร้างอสุจิ ทั้งนี้ ระยะสเปอร์มาโทไซต์ระยะแรก ระยะสเปอร์มาโทไซต์ระยะที่สอง ระยะสเปอร์มาทิดและระยะสเปอร์มาโทซัวก็ ยังสามารถพบได้ภายในท่อสร้างอสุจิ (สำหรับสัดส่วนเพศของปลา A. grunniens เป็น 1:1) จากค่าดัชนีความสมบูรณ์เพศ (GSI), ค่าดัชนีความ สมบูรณ์ของตับ (HSI) และการเปลี่ยนแปลงร้อยละของการเจริญของอวัยวะสร้างเซลล์สืบพันธุ์ พบว่าค่าดัชนีความสมบูรณ์เพศสอดคล้องกับการ เจริญของอวัยวะสืบพันธุ์ของปลาคางคกทั้งสองเพศ พบช่วงสืบพันธุ์สองช่วง [ช่วงแรกคือ ช่วงเดือนมกราคม พ.ศ.2560 ถึงเดือนกุมภาพันธ์ พ.ศ.2560 และช่วงที่สอง คือ ช่วงเดือนกรกฏาคม พ.ศ.2560 ถึงเดือนตุลาคม พ.ศ.2560] A. grunniens …

Characterization Of Vitellogenesis In The Bonnethead Shark Sphyrna Tiburo, Adrien Kathleen Mowle

UNF Graduate Theses and Dissertations

Vitellogenin (Vtg) is a precursor to yolk-proteins produced in the liver of many invertebrates and non-mammalian vertebrates; its synthesis is stimulated by the hormone estradiol (E2). This study is the first to characterize vitellogenin synthesis in a placental viviparous elasmobranch, the yolk-sac placental bonnethead shark, Sphyrna tiburo. This study focused on determining where and when Vtg is produced, as well as what hormonal factors regulate Vtg production. The liver was confirmed as the site of Vtg production via immunohistochemistry. Immunoreactivity was also observed within granulosa cells of ovarian follicles; further experimentation is needed to determine if this is indicative …

Establishing Relationships Among Environmental Stressors, Host Immune Status, And Wasting Disease Susceptibility In The Dominant Seagrass Species Thalassia Testudinum, Paige Joy Duffin

UNF Graduate Theses and Dissertations

A growing body of evidence supports the observation that marine disease outbreaks, especially those caused by opportunistic pathogens, are increasing in frequency and severity. One genus of such pathogens, Labyrinthula, has been identified as the causative agent of seagrass wasting disease, an epidemic that has historically plagued seagrass beds around the world. It is suspected that pathogenicity is intimately linked to the ability of the host to initiate defense responses, but a lack of compelling evidence prevents any meaningful application of preliminary observations. This body of work investigated the roles of host genotype, host immune status, and environmental stressors …

The Effects Of The Red Tide Producing Dinoflagellate, Karenia Brevis, And Associated Brevetoxins On Viability And Sublethal Stress Responses In Scleractinian Coral: A Potential Regional Stressor To Coral Reefs, David A. Reynolds

UNF Graduate Theses and Dissertations

Coral cover is in decline on a global scale, with increased mortality events being attributed to a number of global and regional stressors. While the impacts of global stressors (e.g. sea surface temperature rise, ocean acidification) are well documented, there is growing interest in identifying and understanding the impacts of regional stressors. The reason for this change in focus is that regional stressors can often work in combination, sometimes synergistically, with global stressors and that stressors on a regional scale tend to be more easily mitigated by management practices. One regional stressor that impacts a myriad of marine organisms in …

Distribution And Community Structure Of First Coast Shark Assemblages And Their Relative Trophic Niche Dynamics, Clark R. Morgan

UNF Graduate Theses and Dissertations

Nearshore marine environments are known to be highly productive systems with relatively high faunal diversity and abundances, but these systems are particularly vulnerable to negative impacts from anthropogenic disturbances that can result in habitat degradation. Despite these challenges, many shark species of various life stages utilize coastal shelf habitats, inshore estuaries, and bays. The inshore habitats of Cumberland and Nassau Sounds in northeast Florida have been proposed as potential nursery grounds by earlier work, but this suggestion did not satisfy all of the standard criteria of shark nursery designation. It has recently been stated that the combination of surveys inside …