Mitochondrial Dna Sequence Alignments And Raw Fastq Files For The Population Genetic Analysis Of The Deep Sea Isopod, Bathynomus Giganteus,
2018
Nova Southeastern University
Mitochondrial Dna Sequence Alignments And Raw Fastq Files For The Population Genetic Analysis Of The Deep Sea Isopod, Bathynomus Giganteus, Laura Timm, Barbara Moahamed
DEEPEND Datasets
This data set includes three alignments (12S, 16S, COI) of mitochondrial DNA sequences, as well as two raw fastq files generated through the next-generation sequencing (NGS) method ddRADseq. This data was collected from Bathynomus giganteus specimens collected from throughout the northeastern Gulf of Mexico.
Mitochondrial And Nuclear Sequences For Phylogenetic Analysis Of Three Cephalopod Species, Northern Gulf Of Mexico, May 2015 To May 2017,
2018
Nova Southeastern University
Mitochondrial And Nuclear Sequences For Phylogenetic Analysis Of Three Cephalopod Species, Northern Gulf Of Mexico, May 2015 To May 2017, Amanda Sosnowki
DEEPEND Datasets
The midwater column contains a wide diversity of cephalopods in the northern Gulf of Mexico. DNA sequence data (barcodes) have become a key tool to discover hidden biodiversity. We generated mitochondrial DNA barcode datasets based on the Cytochrome c oxidase I (COI), 16s, and 28s genes from cephalopods. These data were analyzed using phylogenetic methods to examine possible connectivity of 3 species (Vampyroteuthis infernalis, Pyroteuthis margaritifera, and Cranchia scabra) between two basins, the Gulf of Mexico and the area surrounding Bear Seamount in the northwestern Atlantic Ocean. These datasets were generated from cephalopods collected in the northern Gulf of Mexico …
Chlorophyll Concentration And Optical Absorption Spectra Of Particulate And Dissolved Material, Collected At Several Depths On Deepend Cruises Dp05 From January-December 2017,
2018
University of South Florida
Chlorophyll Concentration And Optical Absorption Spectra Of Particulate And Dissolved Material, Collected At Several Depths On Deepend Cruises Dp05 From January-December 2017, Chuanmin Hu
DEEPEND Datasets
The optical absorption spectra from seawater’s particulate and dissolved components can be used to compute the penetration of light to various depths, estimate the proportion of living to non-living particulate matter, assess photosynthetic light availability and the type of phytoplankton present, and to validate satellite or airborne ocean color measurements. Chlorophyll and phaeopigment concentrations are often used to estimate the amount of phytoplankton present, and to allow extrapolation of in situ fluorometric measurements. Water was collected using a CTD rosette near the surface and from several depths at each sampling station occupied by the DEEPEND cruise DP05 (see GRIIDC dataset …
Stable Isotope (13c/15n) Data Of Meso- And Bathypelagic Nekton, Northern Gulf Of Mexico, March - September 2011,
2018
Nova Southeastern University
Stable Isotope (13c/15n) Data Of Meso- And Bathypelagic Nekton, Northern Gulf Of Mexico, March - September 2011, T. M. Richards, E. E. Gipson
DEEPEND Datasets
These data represent stable isotope values (13C/15N) of eight species of meso- and bathypelagic nekton collected in the northern Gulf of Mexico during spring (22-March to 11-April), summer (23-June to 13-July), and fall (8-September to 27-September) of 2011. The species examined in this study include: Anoplogaster cornuta, Chauliodus sloani, Coccorella atlantica, Gigantura chuni, Gigantura indica, Omosudis lowii, Photostomias guernei, and Stomias affinis. Isotope values are derived from white muscle tissue dissected from 212 individual fish that were collected using large mid-water trawls towed from the surface to depths of either 700 or 1400 m. The samples were collected as part …
Is There A Link Between Aging And Microbiome Diversity In Exceptional Mammalian Longevity?,
2018
University College Dublin
Is There A Link Between Aging And Microbiome Diversity In Exceptional Mammalian Longevity?, Graham M. Hughes, John Leech, Sébastien J. Puechmaille, Jose V. Lopez, Emma C. Teeling
Marine & Environmental Sciences Faculty Articles
A changing microbiome has been linked to biological aging in mice and humans, suggesting a possible role of gut flora in pathogenic aging phenotypes. Many bat species have exceptional longevity given their body size and some can live up to ten times longer than expected with little signs of aging. This study explores the anal microbiome of the exceptionally long-lived Myotis myotis bat, investigating bacterial composition in both adult and juvenile bats to determine if the microbiome changes with age in a wild, long-lived non-model organism, using non-lethal sampling. The anal microbiome was sequenced using metabarcoding in more than 50 …
16s And Coi Barcoding Sequences For Crustaceans Collected From The Northern Gulf Of Mexico For Cruises Dp02, Dp03, And Dp04 From August 2015 - August 2016,
2018
Florida International University
16s And Coi Barcoding Sequences For Crustaceans Collected From The Northern Gulf Of Mexico For Cruises Dp02, Dp03, And Dp04 From August 2015 - August 2016, Heather Bracken-Grissom Dr.
DEEPEND Datasets
These are the 16S and COI barcoding sequences for crustaceans collected on cruises DP02, DP03, and DP04. These barcodes, obtained from the species we collected, will be used to aid in species identification efforts, evolutionary relationships analyses, adult-larval linkages, and new species discoveries. Samples were taken from animals collected during cruises that took place in the northern Gulf of Mexico from August 2015 - August 2016.
Habitat Classification Of The Gulf Of Mexico (Gom) Using The Hybrid Coordinate Ocean Model (Hycom) And Salinity/Temperature Profiles, Cruises Dp01-Dp04, May 2015 To August 2016,
2018
Nova Southeastern University
Habitat Classification Of The Gulf Of Mexico (Gom) Using The Hybrid Coordinate Ocean Model (Hycom) And Salinity/Temperature Profiles, Cruises Dp01-Dp04, May 2015 To August 2016, Matt Johnston, Rosanna Milligan, Cole Easson, Sergio Derada, Brad Penta, Tracey Sutton
DEEPEND Datasets
Deep pelagic habitat from the entire Gulf of Mexico (GOM) was classified using the deviation of sea surface height (SSH) from mean SSH for the entire GOM and water temperature at 300 m water depth, founded on ocean condition data from the 1/25° GOM HYbrid Coordinate Ocean Model (HYCOM). Pelagic habitats were segregated into anticyclonic, mixed boundaries, and common water units – all of which likely produce varying levels of forage for deep-sea fauna and may be trophic drivers. Model classifications were compared to classifications based on water column temperature and salinity at depth, as measured by CTD casts during …
Dna Sequences Of Mitochondrial Cytochrome C Oxidase I (Coi) Genes From Deep Sea Fishes Collected During Deepend Cruise Dp05 From 2017-05-01 To 2017-05-11,
2018
Nova Southeastern University
Dna Sequences Of Mitochondrial Cytochrome C Oxidase I (Coi) Genes From Deep Sea Fishes Collected During Deepend Cruise Dp05 From 2017-05-01 To 2017-05-11, Kimberly A. Finnegan, Andrea Bernard, M. Weber, Ron Eytan, Mahmood S. Shivji
DEEPEND Datasets
Deep sea fishes were collected in the northern Gulf of Mexico during DEEPEND cruise DP05 from May 1 to 11, 2017. This dataset contains Genbank accession numbers of DNA sequences of the mitochondrial Cytochrome c oxidase I (COI) gene from fish species collected.
Modeling Chlorophyll Concentrations On The Ohio River Using Remotely Sensed Data,
2018
Marshall University
Modeling Chlorophyll Concentrations On The Ohio River Using Remotely Sensed Data, Thaddaeus Stephen Tuggle
Theses, Dissertations and Capstones
Traditional direct water quality methodologies limit the ability to spatially and temporally predict algal blooms in lotic systems due to the size and characteristics of large river systems. Algal blooms potentially can be predicted by knowing the spatial and temporal patterns of change in cyanobacteria concentrations at large scales. Remote sensing studies investigating freshwater algal blooms, some known to secrete harmful toxins, are primarily conducted on lentic systems while large lotic systems are greatly ignored. In this study I developed a chlorophyll concentration estimation model for the Ohio River using a satellite remote sensing approach. Ground-truth water quality measures, including …
Comparison Of Porifera Bacterial Symbiont Community Profiles Based On Host Species And Source Template,
2018
Nova Southeastern University
Comparison Of Porifera Bacterial Symbiont Community Profiles Based On Host Species And Source Template, Celeste Banfill, Jose Lopez
Lopez Laboratory: Genomics & Microbial Data
The present microbiome study reports a follow up microbiome characterization of the Porifera Tree of Life (PorToL) project, which has recognized the significance of understanding the evolutionary relationships among diverse sponge taxa (Redmond et al 2012; Thacker et al, 2013; and see http://Portol.org). The aim of this research is to opportunistically expand on the work of Hill et al. (2013) to provide preliminary data that 1) compares the diversity of bacterial communities across eight sponge taxa and 2) compares the differences between DNA and cDNA (RNA) generated 16S rRNA data to distinguish active vs. non-active bacteria.
Pittsburg State University Ichthyology Field Notebooks,
2018
Pittsburg State University
Pittsburg State University Ichthyology Field Notebooks, Karisa Boyer
Ichthyology Collection
No abstract provided.
Integrated Analysis Of The Value Of Wetland Services In Coastal Adaptation; Methodology And Case Study Of Hampton-Seabrook Estuary, New Hampshire,
2018
UMASS Boston
Integrated Analysis Of The Value Of Wetland Services In Coastal Adaptation; Methodology And Case Study Of Hampton-Seabrook Estuary, New Hampshire, Paul Kirshen, Semra Aytur, David M. Burdick, Diane Foster, Tom Lippmann, Ellen Douglas, Sydney Nick, Chris Watson
Jackson Estuarine Laboratory
The present impacts from coastal storms and high tides grow significantly over time due to SLR even over the relatively short period to 2060. Hydrodynamic model simulations of storm surge with and without sea level rise scenarios show that although flooding and inundation increases with increasing subtidal forcing and higher sea level, dissipation of the tide and storm surge in the estuary channel somewhat limits the maximum inundation that might otherwise be expected in the back marsh areas. The estuary is dominated by high marsh, which lies high in the intertidal zone and by 2060 it will convert to mostly …
The Political Biogeography Of Migratory Marine Predators,
2018
University of California, Santa Cruz
The Political Biogeography Of Migratory Marine Predators, Autumn-Lynn Harrison, Daniel Costa, Arliss Winship, Scott Benson, Steven Bograd, Michelle Antolos, Aaron Carlisle, Heidi Dewar, Peter Dutton, Salvador Jorgensen, Suzanne Kohin, Bruce Mate, Patrick Robinson, Kurt Schaefer, Scott A. Shaffer, George Shillinger, Samantha Simmons, Kevin Weng, Kristina Gjerde, Barbara Block
Faculty Publications, Biological Sciences
During their migrations, marine predators experience varying levels of protection and face many threats as they travel through multiple countries’ jurisdictions and across ocean basins. Some populations are declining rapidly. Contributing to such declines is a failure of some international agreements to ensure effective cooperation by the stakeholders responsible for managing species throughout their ranges, including in the high seas, a global commons. Here we use biologging data from marine predators to provide quantitative measures with great potential to inform local, national and international management efforts in the Pacific Ocean. We synthesized a large tracking data set to show how …
Compression And Relaxation Of Fishing Effort In Response To Changes In Length Of Fishing Season For Red Snapper (Lutjanus Campechanus) In The Northern Gulf Of Mexico,
2018
University of South Alabama
Compression And Relaxation Of Fishing Effort In Response To Changes In Length Of Fishing Season For Red Snapper (Lutjanus Campechanus) In The Northern Gulf Of Mexico, Sean P. Powers, Kevin Anson
University Faculty and Staff Publications
A standard method used by fisheries managers to decrease catch and effort is to shorten the length of a fishery; however, data on recreational angler response to this simple approach are surprisingly lacking. We assessed the effect of variable season length on daily fishing effort, measured by using numbers of boat launches per day, anglers per boat, and anglers per day from video observations, in the recreational sector of the federal fishery for red snapper (Lutjanus campechanus) in coastal Alabama. From 2012 through 2017, season length fluctuated from 3 to 40 d. Daily effort, measured by using mean number of …
Ms Environmental Biology Capstone Project,
2018
Regis University
Ms Environmental Biology Capstone Project, Alyssa Herrin
Regis University Student Publications (comprehensive collection)
The study of visitor use in museums, zoos, and aquariums is an important aspect of understanding visitor engagement and evaluating the function of the institution. Here, visitor demographics such as age, group size, and number of children were assessed to see their influence on time spent and number of stops visitors made while visiting the Denver Botanic Gardens in Denver, Colorado. This study evaluated differences in time spent and number of stops made among different gardens by observing visitors and mapping their paths and activities through each zone. The results show that older visitors and larger groups spent more time …
The Life History Of Faxonius Rusticus (Girard, 1852) In Sunfish Creek, Monroe County, Ohio,
2018
Marshall University
The Life History Of Faxonius Rusticus (Girard, 1852) In Sunfish Creek, Monroe County, Ohio, Kyle Mcgill
Theses, Dissertations and Capstones
Crayfish are among the most imperiled faunal groups globally. The continued spread of invasive species is a major impact to crayfish. Invasive species, much like the native species, are often understudied. As declines continue, invasive species spread, and new species are discovered; additional life history studies are as important as ever for crayfish conservation. Life history data was collected for rusty crayfish (Faxonius rusticus) from October 2017 to September 2018 in Sunfish Creek, Monroe County, Ohio. Faxonius rusticus are native to the Ohio River drainage around Cincinnati, Ohio but have extensively expanded their range over the past 30 years. Sunfish …
Diet Of The Invasive Lionfish Pterois Sp. In Broward County, Florida,
2018
Nova Southeastern University
Diet Of The Invasive Lionfish Pterois Sp. In Broward County, Florida, Sarah Ann Jasper, J. D. Thomas, David Kerstetter
Marine & Environmental Sciences Faculty Articles
The geographic range of invasive lionfish Pterois sp. currently extends throughout the Greater Caribbean in the western North Atlantic, prompting concerns about the impacts of its predation on local ecosystems. We focused on dietary habits of lionfish in Broward County, Florida, where there is only limited, anecdotal information on the species’ prey selection. Diet was determined using percent number, percent occurrence and percent weight, as well as the composite index of relative abundance (%IRI). A high percent teleost diet was documented during the third quarter (July-September) and a high crustacean diet in the fourth quarter (October-December), but seasonal effects by …
Preparing For A Northwest Passage: A Workshop On The Role Of New England In Navigating The New Arctic,
2018
The University of New Hampshire
Preparing For A Northwest Passage: A Workshop On The Role Of New England In Navigating The New Arctic, Katharine A. Duderstadt, Catherine M. Ashcraft, Jennifer F. Brewer, Elizabeth Burakowski, Jaed M. Coffin, Jack E. Dibb, Lawrence C. Hamilton, Nancy E. Kinner, Larry A. Mayer, Jennifer L. Miksis-Olds, Joseph Salisbury, Kerri D. Seger, Ruth K. Varner, Cameron P. Wake
All Materials
Preparing for a Northwest Passage: A Workshop on the Role of New England in Navigating the New Arctic (March 25 - 27, 2018 -- The University of New Hampshire) paired two of NSF's 10 Big Ideas: Navigating the New Arctic and Growing Convergence Research at NSF. During this event, participants assessed economic, environmental, and social impacts of Arctic change on New England and established convergence research initiatives to prepare for, adapt to, and respond to these effects. Shipping routes through an ice-free Northwest Passage in combination with modifications to ocean circulation and regional climate patterns linked to Arctic ice melt …
Preliminary Age Estimates For Female Southern Stingrays (Hypanus Americanus) From Southwestern Florida, Usa,
2018
University of New England
Preliminary Age Estimates For Female Southern Stingrays (Hypanus Americanus) From Southwestern Florida, Usa, Abigail H.P. Hayne, Gregg R. Poulakis, Jason C. Seitz, James A. Sulikowski
Gulf and Caribbean Research
No abstract provided.
Morphological Features Of Taxonomical Value For The Identification Of Three Western Atlantic Penaeid Shrimp Genera (Decopoda: Penaeidae),
2018
RSMAS-University of Miami
Morphological Features Of Taxonomical Value For The Identification Of Three Western Atlantic Penaeid Shrimp Genera (Decopoda: Penaeidae), Maria M. Criales, Carlos Varela
Gulf and Caribbean Research
Rostra, telsons and patterns of sternal spines were examined for Western Atlantic penaeid shrimps Metapenaeopsis, Rimapenaeus and Farfantepenaeus to facilitate the identification of postlarval and juvenile stages and clarify the patterns of sternal spines previously proposed as a useful tool for identifying penaeid postlarvae at the generic level. Examination of the telsons and rostra from closely related Metapenaeopsis and Rimapenaeus species indicated that at the postlarval stages these morphological features are very similar in shape and size. Regarding the sternal spines, Metapenaeopsis spp. bear a pair on the second thoracic plate, while Rimapenaeus spp. lack thoracic spines. The different pattern …
