Marine Biology Commons^™

Phylogenetic, Genomic, And Biogeographic Characterization Of Anovel And Ubiquitous Marine Invertebrate-Associated Rickettsiales Parasite,Candidatus Aquarickettsia Rohweri, Gen. Nov., Sp. Nov, J. Grace Klinges, Stephanie M. Rosales, Ryan Mcminds, Koty H. Sharp

Arts & Sciences Faculty Publications

Bacterial symbionts are integral to the health and homeostasis of invertebrate hosts. Notably, members of the Rickettsiales genus Wolbachia influence several aspects of the fitness and evolution of their terrestrial hosts, but few analogous partnerships have been found in marine systems. We report here the genome, phylogenetics, and biogeography of a ubiquitous and novel Rickettsiales species that primarily associates with marine organisms. We previously showed that this bacterium was found in scleractinian corals, responds to nutrient exposure, and is associated with reduced host growth and increased mortality. This bacterium, like other Rickettsiales, has a reduced genome indicative of a parasitic …

Measuring, Mapping And Quantifying The Effects Of Trust And Informal Communication On Transboundary Collaboration In The Great Lakes Fisheries Policy Network, Andrew M. Song, Owen Temby, Dongkyu Kim, Angel Saavedra Cisneros, Gordon M. Hickey

School of Earth, Environmental, & Marine Sciences Faculty Publications

Ecosystem-based management of fisheries and other transboundary natural resources require a number of organizations across jurisdictions to exchange knowledge, coordinate policy goals and engage in collaborative activities. Trust, as part of social capital, is considered a key mechanism facilitating the coordination of such inter-organizational policy networks. However, our understanding of multi-dimensional trust as a theoretical construct and an operational variable in environmental and natural resource management has remained largely untested. This paper presents an empirical assessment of trust and communication measures applied to the North American Great Lakes fisheries policy network. Using a scale-based method developed for this purpose, we …

Past, Present, And Future Perspectives Of Environmental Dna (Edna) Metabarcoding: A Systematic Review In Methods, Monitoring, And Applications Of Global Edna, Krista M. Ruppert, Richard J. Kline, Md. Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Environmental DNA (eDNA) metabarcoding is a novel method of assessing biodiversity wherein samples are taken from the environment via water, sediment or air from which DNA is extracted, and then amplified using general or universal primers in polymerase chain reaction and sequenced using next-generation sequencing to generate thousands to millions of reads. From this data, species presence can be determined, and overall biodiversity assessed. It is an interdisciplinary method that brings together traditional fieldbased ecology with in-depth molecular methods and advanced computational tools. As an emerging monitoring method, there are many pitfalls and roadblocks to be considered and avoided, but …

Patterns Of Diatom Diversity Correlate With Dissolved Trace Metal Concentrations And Longitudinal Position In The Notheast Pacific Coastal Offshore Transition Zone, P. Dreux Chappell, E. Virginia Armbrust, Katherine A. Barbeau, Randelle M. Bundy, Jagruti Vedamati, Bethany D. Jenkins

OES Faculty Publications

Diatoms are important primary producers in the northeast Pacific Ocean, with their productivity closely linked to pulses of trace elements in the western high nitrate, low chlorophyll (HNLC) region of the oceanographic time series transect 'Line P.' Recently, the coastal-HNLC transition zone of the Line P transect was identified as a hotspot of phytoplankton productivity, potentially controlled by a combination of trace element and macronutrient concentrations. Here we describe diatom community composition in the eastern Line P transect, including the coastal- HNLC transition zone, with a method using high-throughput sequencing of diatom 18S gene amplicons. We identified significant correlations between …

Development Of A Biomarker Panel For Identifying Stressed Marine Mammals, Laura Pujade

University of the Pacific Theses and Dissertations

Increasing anthropogenic disturbance in marine ecosystems such as fishing, oil-drilling, and noise pollution can have detrimental effects on the reproduction and survival of apex predators such as marine mammals. Stress activates the hypothalamic-pituitary-adrenal (HPA) axis, resulting in increased circulating glucocorticoid (GCs) hormones, which alter expression of target genes encoding metabolic enzymes and other mediators of stress. Prolonged HPA axis stimulation may increase catabolism of nutrient stores and suppress immune and reproductive functions, impacting the fitness of marine mammals. GCs measurements are used to identify wild animals experiencing stress. However, these measurements may not be sensitive enough to distinguish between an …

Blubber Transcriptome And Proteome Responses To Repeated Adrenocorticotropic Hormone Administration In A Marine Mammal, Jared Deyarmin

University of the Pacific Theses and Dissertations

Chronic physiological stress impacts animal fitness by catabolizing metabolic stores and suppressing reproduction and immunity. This can be especially deleterious for capital breeding carnivores, such as marine mammals, which rely on lipid stores accrued during intensive foraging to sustain prolonged periods of fasting associated with reproduction. Therefore, chronic stress may cause a decrease in fitness in these animals, leading to population declines and potentially detrimental shifts in food web dynamics as a result. However, the impacts and indicators of chronic stress in animals are currently poorly understood. To identify downstream mediators of repeated stress responses in marine mammals, adrenocorticotropic hormone …

Scaphanocephalus-Associated Dermatitis As The Basis For Black Spot Disease In Acanthuridae Of St. Kitts, West Indies, Michelle M. Dennis, Adrien Izquierdo, Anne Conan, Kelsey Johnson, Solenne Giardi, Paul Frye, Mark A. Freeman

Harold W. Manter Laboratory of Parasitology: Library Materials

Acanthurus spp. of St. Kitts and other Caribbean islands, including ocean surgeonfish A. bahianus, doctorfish A. chirurgus, and blue tang A. coeruleus, frequently show multifocal cutaneous pigmentation. Initial reports from the Leeward Antilles raised suspicion of a parasitic etiology. The aim of this study was to quantify the prevalence of the disease in St. Kitts’ Acanthuridae and describe its pathology and etiology. Visual surveys demonstrated consistently high adjusted mean prevalence at 3 shallow reefs in St. Kitts in 2017 (38.9%, 95% CI: 33.8−43.9) and 2018 (51.5%; 95% CI: 46.2−56.9). There were no differences in …

Adaptive Signatures In Thermal Performance Of The Temperate Coral Astrangia Poculata, H. E. Aichelman, Richard C. Zimmerman, Daniel J. Barshis

Biological Sciences Faculty Publications

Variation in environmental characteristics and divergent selection pressures can drive adaptive differentiation across a species' range. Astrangia poculata is a temperate scleractinian coral that provides unique opportunities to understand the roles of phenotypic plasticity and evolutionary adaptation in coral physiological tolerance limits. A. poculata inhabits hard bottom ecosystems from the northwestern Atlantic to the Gulf of Mexico and withstands an annual temperature range up to 20° C. Additionally, A. poculata is facultatively symbiotic and co-occurs in both symbiotic ("brown") and aposymbiotic ("white") states. Here, brown and white A. poculata were collected from Virginia (VA) and Rhode Island (RI), USA and …

Sponges Structure Water-Column Characteristics In Shallow Tropical Coastal Ecosystems, Marla M. Valentine, Mark J. Butler Iv

Biological Sciences Faculty Publications

Sponges can have powerful effects on ecosystem processes in shallow tropical marine ecosystems. They drive benthic-pelagic coupling by filtering dissolved and particulate organic matter from the water column, alter water chemistry in association with their symbiotic microorganisms, and increase habitat structural complexity. Anthropogenic degradation of coastal waters is widespread and can reduce the density and diversity of foundation species such as sponges, potentially diminishing their contributions to ecosystem processes. We used a novel mesocosm design that minimized artifacts associated with traditional single-species and closed-system filtration experiments to examine the effects of water turnover and sponge biomass on water-column properties. Using …

Mapping Status And Conservation Of Global At-Risk Marine Biodiversity, Casey C. O'Hara, Juan Carlos Villaseñor-Derbez, Gina M. Ralph, Benjamin S. Halpern

Biological Sciences Faculty Publications

To conserve marine biodiversity, we must first understand the spatial distribution and status of at‐risk biodiversity. We combined range maps and conservation status for 5,291 marine species to map the global distribution of extinction risk of marine biodiversity. We find that for 83% of the ocean, >25% of assessed species are considered threatened, and 15% of the ocean shows >50% of assessed species threatened when weighting for range‐limited species. By comparing mean extinction risk of marine biodiversity to no‐take marine reserve placement, we identify regions where reserves preferentially afford proactive protection (i.e., preserving low‐risk areas) or reactive protection (i.e., mitigating …

Parasitic Dinoflagellate Hematodinium Perezi Prevalence In Larval And Juvenile Blue Crabs Callinectes Sapidus From Coastal Bays Of Virginia, H. J. Small, J. P. Huchin-Mian, K. S. Reece, K. M. Pagenkopp Lohan, Mark J. Butler Iv, J. D. Shields

Biological Sciences Faculty Publications

The parasitic dinoflagellate Hematodinium perezi infects the American blue crab Callinectes sapidus and other decapods along the Eastern seaboard and Gulf of Mexico coast of the USA. Large juvenile and adult blue crabs experience high mortality during seasonal outbreaks of H. perezi, but less is known about its presence in the early life history stages of this host. We determined the prevalence of H. perezi in megalopae and early benthic juvenile crabs from multiple locations along the Virginia portion of the Delmarva Peninsula. The DNA of H. perezi was not detected in any megalopae collected from several locations within …

Seasonal Spatial Segregation In Blue Sharks (Prionace Glauca) By Sex And Size Class In The Northeast Pacific Ocean, Sara M. Maxwell, Kylie L. Scales, Steven Bograd, Dana K. Briscoe, Heidi Dewar, Elliott L. Hazen, Rebecca L. Lewison, Heather Welch, Larry B. Crowder

Biological Sciences Faculty Publications

Aim: Animal tracking can provide unique insights into the ecology and conservation of marine species, such as the partitioning of habitat, including differences between life history stages or sexes, and can inform fisheries stock assessments, bycatch reduction and spatial management such as dynamic management.

Location: Northeast Pacific Ocean.

Methods: We used satellite tracking data from 47 blue sharks (Prionace glauca) from the Northeast Pacific to determine movements and home range along the west coast of North America, and sex–size class (immature females, mature males) specific habitat preferences using boosted regression trees. Using a suite of static and dynamic …

Effects Of Aquatic Acidification On Calcium Uptake In White River Shrimp Litopenaeus Setiferus Gills, Maria-Flora Jacobs

UNF Graduate Theses and Dissertations

Previous research regarding aquatic acidification has examined the protonation of the carbonate and does not consider calcium to be a limiting factor. This is the first study to suggest that pH may affect the uptake of calcium in crustacean gills. This project describes ion transport mechanisms present in the cell membranes of white river shrimp Litopenaeus setiferus gill epithelium, and the effects of pH on the uptake of calcium by these means. Partially purified membrane vesicles (PPMV) of shrimp gills were prepared through a homogenization process that has been used previously to define ion transport in crab and lobster gill …

Characteristics And Mechanisms Of Coastal Upwelling In The Gulf Of Thailand, Pacharamon Sripoonpan

Chulalongkorn University Theses and Dissertations (Chula ETD)

The characteristics and mechanisms of coastal upwelling in the Gulf of Thailand was investigated through 2 approaches; 1) Ekman transport upwelling index (UIET) and sea surface temperature upwelling index (UISST), and 2) Hydrodynamics model DELFT3D-FLOW under the influences of tide, spatially varying wind, water temperature, salinity and river discharge. The UIET indicated favorable upwelling conditions along the west coast of the GoT mostly during northeast monsoon in January and 1st inter-monsoon in March, while the favorable upwelling condition indicated by UISST was found along the east coast during southwest monsoon in August and 2nd inter-monsoon in October. The model expressed …

The ‘Thing’ From This World, Sergio M. Pellis

Animal Sentience

Science progresses by making contrasts, and the living world is a gold mine of contrasts. Often disciplines become victims by focusing on too narrow a slice of that diversity, leading to a myopic view of how nature works. The relationships between the brain and behavior have been intensively studied in vertebrates, especially mammals, and we have become complacent in our assumptions about how behavior is constructed. As the target article by Mather (2019) shows, the relationship between the brain and behavior in octopuses forces us to reevaluate some of those assumptions.

Spatial Variability In Recruitment Of Chilipepper Rockfish (Sebastes Goodei) In The California Current System, Laura K. Solinger

Cal Poly Humboldt theses and projects

Properly describing variability in population dynamics (e.g., growth, fecundity, recruitment) is expected to improve management of important fisheries stocks (Maunder & Piner, 2014). As recruitment to most fish stocks is determined during early life history stages (Houde, 1997; Iles & Beverton, 2000), and early life history stages are influenced by oceanographic conditions (Bjorkstedt et al. 2002; Laidig, 2010), understanding how environmental stochasticity influences recruitment deviations has potential to improve estimates of stock productivity and how productivity might change over time to support more effective management. Chilipepper Rockfish (Sebastes goodei) are an important commercial species that is managed as …

Adult Atlantic Sturgeon Population Dynamics In The York River, Virginia, Jason E. Kahn

Graduate Theses, Dissertations, and Problem Reports (ETD)

Sturgeon first appear in the fossil record in the Triassic Period just over 200 million years ago and are among the most primitive of the bony fishes. Despite their large size and historic presence along the East Coast, Atlantic sturgeon were not targeted for their meat and caviar as a commercial fishery until 1880. By 1905 they had declined to less than one percent of their pre-fishing abundance but the fishery continued. Prior to 1980, there had been very little research on Atlantic sturgeon, primarily limited to documenting landing location and poundage, maximum longevity, or weight of eggs per fish. …

Synthesis Report: Defining Thresholds And Indicators Of Primary Producer Response To Dredging-Related Pressures: Report Of Theme 5 Prepared For The Dredging Science Node, Paul Lavery, Kathryn Mcmahon, John Statton, Mat Vanderklift, Simone Strydom, Gary Kendrick

Research outputs 2014 to 2021

Seagrasses form a small component of a diverse group of organisms termed ‘benthic primary producers’. Benthic primary producers are organisms that grow on the sea-bed that obtain some or all of their energy needs from photosynthesis. This includes animals such as scleractinian corals and some sponges that host microscopic intercellular algae, coralline and turf algae, and the larger seaweeds such as the kelps and sargassum. Seagrasses are marine flowering plants, more closely related to land plants than seaweeds and algae. Seagrasses live mostly in soft sediments, and can be found from the shallow intertidal zone through to a depth of …

Role Of Carbonate Burial In Blue Carbon Budgets, V. Saderne, N.R. Geraldi, P.I. Macreadie, D.T. Maher, J.J. Middelburg, O. Serrano, H. Almahasheer, A. Arias-Ortiz, M. Cusack, B.D. Eyre, J.W. Fourqurean, H. Kennedy, D. Krause-Jensen, T. Kuwae, P.S. Lavery, C.E. Lovelock, N. Marba, P. Masqué, M.A. Mateo, I. Mazarrasa, K.J. Mcglathery, M.P.J. Oreska, C.J. Sanders, I.R. Santos

Research outputs 2014 to 2021

Calcium carbonates (CaCO 3 ) often accumulate in mangrove and seagrass sediments. As CaCO 3 production emits CO 2 , there is concern that this may partially offset the role of Blue Carbon ecosystems as CO 2 sinks through the burial of organic carbon (C org ). A global collection of data on inorganic carbon burial rates (C inorg , 12% of CaCO 3 mass) revealed global rates of 0.8 TgC inorg yr −1 and 15–62 TgC inorg yr −1 in mangrove and seagrass ecosystems, respectively. In seagrass, CaCO 3 burial may correspond to an offset of 30% of the …

Seagrass Sedimentary Deposits As Security Vaults And Time Capsules Of The Human Past, Dorte Krause-Jensen, Oscar Serrano, Eugenia T. Apostolaki, David J. Gregory, Carlos M. Duarte

Research outputs 2014 to 2021

Seagrass meadows form valuable ecosystems, but are considered to have low cultural value due to limited research efforts in this field. We provide evidence that seagrass deposits play a hitherto unrealized central role in preserving valuable submerged archaeological and historical heritage across the world, while also providing an historical archive of human cultural development over time. We highlight three case studies showing the significance of seagrass in protecting underwater cultural heritage in Denmark, the Mediterranean and Australia. Moreover, we present an overview of additional evidence compiled from the literature. We emphasize that this important role of seagrasses is linked to …