Marine Biology Commons^™

Seagrass Soil Archives Reveal Centennial-Scale Metal Smelter Contamination While Acting As Natural Filters, Anna Lafratta, O Serrano, Pere Masque, Miguel Mateo, Milena Fernandes, Sam Gaylard, Paul Lavery

Research outputs 2014 to 2021

The upper Spencer Gulf in South Australia hosts the world's largest single stream Pb-Zn smelter, which has caused environmental and health issues related to elevated metal concentrations in the surrounding environment. The area also has extensive seagrass meadows, occupying >4000 km². We reconstructed the fluxes of heavy metals over the last ~3000 years through a multi-parameter study of the soil archives formed by the seagrass Posidonia australis. Pb, Zn and Cd concentrations increased up to 9-fold following the onset of smelter operations in the 1880s, and the stable Pb isotopic signatures confirmed the smelter has been the main …

The Purr Of The Lionfish: Sound And Behavioral Context Of Wild Lionfish In The Greater Caribbean, Michelle T. Schärer-Umpierre, Carlos Zayas, Richard S. Appeldoorn, Evan Tuohy, Jack C. Olson, Jessica A. Keller, Alejandro Acosta

Gulf and Caribbean Research

Passive acoustic technology has become a useful and cost-effective method to collect data with very high temporal resolution that can be used to detect the presence, distribution, and remotely monitor soniferous marine biodiversity. In order to maximize the potential of bioacoustic and soundscape research in the oceans, understanding the association between the different realms of sound sources, species-specific calls and behavioral context of sound production are fundamental. A previously unknown vocalization was associated with a behavioral display of lionfish (Pterois spp.) by recordings with synchronous audio and video at deep coral reefs in both Puerto Rico and the Florida …

The ‘Thing’ From This World, Sergio M. Pellis

Animal Sentience

Science progresses by making contrasts, and the living world is a gold mine of contrasts. Often disciplines become victims by focusing on too narrow a slice of that diversity, leading to a myopic view of how nature works. The relationships between the brain and behavior have been intensively studied in vertebrates, especially mammals, and we have become complacent in our assumptions about how behavior is constructed. As the target article by Mather (2019) shows, the relationship between the brain and behavior in octopuses forces us to reevaluate some of those assumptions.

Mapping Status And Conservation Of Global At-Risk Marine Biodiversity, Casey C. O'Hara, Juan Carlos Villaseñor-Derbez, Gina M. Ralph, Benjamin S. Halpern

Biological Sciences Faculty Publications

To conserve marine biodiversity, we must first understand the spatial distribution and status of at‐risk biodiversity. We combined range maps and conservation status for 5,291 marine species to map the global distribution of extinction risk of marine biodiversity. We find that for 83% of the ocean, >25% of assessed species are considered threatened, and 15% of the ocean shows >50% of assessed species threatened when weighting for range‐limited species. By comparing mean extinction risk of marine biodiversity to no‐take marine reserve placement, we identify regions where reserves preferentially afford proactive protection (i.e., preserving low‐risk areas) or reactive protection (i.e., mitigating …

Ecological Consequences Of Sea Star Wasting Disease: Non-Consumptive Effects And Trait-Mediated Indirect Interactions From Pisaster Ochraceus, Timothy Ian Mcclure

Cal Poly Humboldt theses and projects

Consumptive effects (CEs) of predators are an important factor in structuring biological communities, but further work is needed to understand how the interaction between spatial and temporal differences in predator density affects non-consumptive effects (NCEs) on prey. NCEs can cause indirect effects on food resources, known as trait-mediated indirect interactions (TMIIs), and thus can also affect community structure. However, few studies have considered the relationships between spatial and temporal predator density variation and the strength of NCEs and TMIIs in the natural environment. The ochre star Pisaster ochraceus is common predator of the herbivorous black turban snail Tegula funebralis, imposing …

Role Of Carbonate Burial In Blue Carbon Budgets, V. Saderne, N.R. Geraldi, P.I. Macreadie, D.T. Maher, J.J. Middelburg, O. Serrano, H. Almahasheer, A. Arias-Ortiz, M. Cusack, B.D. Eyre, J.W. Fourqurean, H. Kennedy, D. Krause-Jensen, T. Kuwae, P.S. Lavery, C.E. Lovelock, N. Marba, P. Masqué, M.A. Mateo, I. Mazarrasa, K.J. Mcglathery, M.P.J. Oreska, C.J. Sanders, I.R. Santos

Research outputs 2014 to 2021

Calcium carbonates (CaCO 3 ) often accumulate in mangrove and seagrass sediments. As CaCO 3 production emits CO 2 , there is concern that this may partially offset the role of Blue Carbon ecosystems as CO 2 sinks through the burial of organic carbon (C org ). A global collection of data on inorganic carbon burial rates (C inorg , 12% of CaCO 3 mass) revealed global rates of 0.8 TgC inorg yr −1 and 15–62 TgC inorg yr −1 in mangrove and seagrass ecosystems, respectively. In seagrass, CaCO 3 burial may correspond to an offset of 30% of the …

Habitat Discontinuities Form Strong Barriers To Gene Flow Among Mangrove Populations, Despite The Capacity For Long Distance Dispersal, Rachel M. Binks, Margaret Byrne, Kathryn Mcmahon, Georgina Pitt, Kathy Murray, Richard D. Evans

Research Datasets

Mangrove forests are among the world’s most important ecosystems but are declining rapidly worldwide. Effective conservation management requires a better understanding of the patterns and drivers of gene flow across a range of spatial scales.

Despite the capacity for long distance propagule dispersal, field studies suggest that mangrove propagules tend not to disperse far from the release point, which has important implications for the impact of habitat discontinuities on gene flow. We use a comprehensive seascape genomics approach to investigate this concept in the world’s most widely distributed mangrove species, Avicennia marina.

Location 21 sites along 2400 km of Western …

Global Trends In Marine Plankton Diversity Across Kingdoms Of Life, Federico M. Ibarbalz, Nicolas Henry, Manoela C. Brandão, Severine Martini, Greta Busseni, Hannah Byrne, Luis Pedro Coelho, Hisashi Endo, Josep Gasol, Ann C. Gregory, FréDéRic Mahe ́, Janaina Rigonato, Marta Royo-Llonch, Guillem Salazar, Isabel Sanz-SáEz, Eleonora Scalco, Dodji Soviadan, Ahmed A. Zayed, Adriana Zingone, Karine Labadie, Joannie Ferland, Claudie Marec, Stefanie Kandels, Marc Picheral, Celine Dimier, Julie Poulain, Sergey Pisarev, Margaux Carmichael, Stephane Pesant, Marcel Babin, Emmanuel Boss, Daniele Iudicone, Olivier Jaillon, Silvia G. Acinas, Hiroyuki Ogata, Eric Pelletier, Lars Stemmann, Matthew B. Sullivan, Shinichi Sunagawa, Laurent Bopp, Colomban De Vargas, Lee Karp-Boss, Patrick Wincker, Fabien Lombard, Chris Bowler, Lucie Zinger

Research outputs 2014 to 2021

The ocean is home to myriad small planktonic organisms that underpin the functioning of marine ecosystems. However, their spatial patterns of diversity and the underlying drivers remain poorly known, precluding projections of their responses to global changes. Here we investigate the latitudinal gradients and global predictors of plankton diversity across archaea, bacteria, eukaryotes, and major virus clades using both molecular and imaging data from Tara Oceans. We show a decline of diversity for most planktonic groups toward the poles, mainly driven by decreasing ocean temperatures. Projections into the future suggest that severe warming of the surface ocean by the end …

Seagrass Sedimentary Deposits As Security Vaults And Time Capsules Of The Human Past, Dorte Krause-Jensen, Oscar Serrano, Eugenia T. Apostolaki, David J. Gregory, Carlos M. Duarte

Research outputs 2014 to 2021

Seagrass meadows form valuable ecosystems, but are considered to have low cultural value due to limited research efforts in this field. We provide evidence that seagrass deposits play a hitherto unrealized central role in preserving valuable submerged archaeological and historical heritage across the world, while also providing an historical archive of human cultural development over time. We highlight three case studies showing the significance of seagrass in protecting underwater cultural heritage in Denmark, the Mediterranean and Australia. Moreover, we present an overview of additional evidence compiled from the literature. We emphasize that this important role of seagrasses is linked to …

Seagrass Removal Leads To Rapid Changes In Fauna And Loss Of Carbon, Michael N. Githaiga, Anna M. Frouws, James G. Kairo, Mark Huxham

Research outputs 2014 to 2021

Seagrass habitats are important natural carbon sinks, with an average of ~14 kg C m⁻² buried in their sediments. The fate of this carbon following seagrass removal or damage has major environmental implications but is poorly understood. Using a removal experiment lasting 18 months at Gazi Bay, Kenya, we investigated the impacts of seagrass loss on sediment topography, hydrodynamics, faunal community structure and carbon dynamics. Sediment pins were used to monitor surface elevation. The effects of seagrass removal on water velocity was investigated using Plaster of Paris dissolution. Sediment carbon concentration was measured at the surface and down to …

River Report. State Of The Lower St. Johns River Basin, Florida: Water Quality, Fisheries, Aquatic Life, Contaminants, 2019, Environmental Protection Board, City Of Jacksonville, University Of North Florida, Jacksonville University, Gerry Pinto, Brian P. Zoellner, Christopher Baynard, Charles Closmann, Nisse Goldberg, Scott F. Jones, William Penwell, Radha Pyati, Adam E. Rosenblatt, Gretchen Bielmyer-Fraser

State of the River Report

No abstract provided.

Complete Mitochondrial Genome Of Callogorgia Cf. Gracilis (Octocorallia: Calcaxonia: Primnoidae), Erin E. Easton, David Hicks

School of Earth, Environmental, & Marine Sciences Faculty Publications

We report the first complete mitochondrial genome of Callogorgia. Callogorgia cf. gracilis isolate DFH32_518B was collected by a remotely operated vehicle at 98 m on McGrail Bank (27.9840725°N, 92.604242°W). The complete mitogenome is 18,937 bp (27.8% A, 18.3% C, 19.8% G, and 34.1% T) and has the ancestral octocoral gene order for its 14 protein-coding genes, two rRNA genes, and one tRNA gene. It is sister to and ∼96.6% similar (uncorrected) to Narella hawaiiensis, the only other complete mitogenome reported for Primnoidae. The cox1 + igr1 + mtMutS region differs by two base pairs (0.12%) from the only reported …

A High-Latitude, Mesophotic Cycloseris Field At 85 M Depth Off Rapa Nui (Easter Island), Bert W. Hoeksema, Javier Sellanes, Erin E. Easton

School of Earth, Environmental, & Marine Sciences Faculty Publications

Published records of mesophotic zooxanthellate corals from Rapa Nui (Easter Island) are rare and so far based only on dredged specimens and observations during scuba dives (Wells 1972, Glynn et al. 2003, 2007). During recent remotely operated vehicle (ROV) surveys off Rapa Nui (March 2016), a large and dense aggregation of zooxanthellate Cycloseris corals (Scleractinia: Fungiidae) with a density of approximately 500 ind m−2 was discovered (27°08΄55˝S, 109°26΄46˝W) on black sand in a depth range of approximately 79–85 m (Panels A, B). A few corals were overturned, exposing their white (azooxanthellate) undersides and sutures along which self-fragmentation took place (Panel …

Measuring, Mapping And Quantifying The Effects Of Trust And Informal Communication On Transboundary Collaboration In The Great Lakes Fisheries Policy Network, Andrew M. Song, Owen Temby, Dongkyu Kim, Angel Saavedra Cisneros, Gordon M. Hickey

School of Earth, Environmental, & Marine Sciences Faculty Publications

Ecosystem-based management of fisheries and other transboundary natural resources require a number of organizations across jurisdictions to exchange knowledge, coordinate policy goals and engage in collaborative activities. Trust, as part of social capital, is considered a key mechanism facilitating the coordination of such inter-organizational policy networks. However, our understanding of multi-dimensional trust as a theoretical construct and an operational variable in environmental and natural resource management has remained largely untested. This paper presents an empirical assessment of trust and communication measures applied to the North American Great Lakes fisheries policy network. Using a scale-based method developed for this purpose, we …

Phylogenetic, Genomic, And Biogeographic Characterization Of Anovel And Ubiquitous Marine Invertebrate-Associated Rickettsiales Parasite,Candidatus Aquarickettsia Rohweri, Gen. Nov., Sp. Nov, J. Grace Klinges, Stephanie M. Rosales, Ryan Mcminds, Koty H. Sharp

Arts & Sciences Faculty Publications

Bacterial symbionts are integral to the health and homeostasis of invertebrate hosts. Notably, members of the Rickettsiales genus Wolbachia influence several aspects of the fitness and evolution of their terrestrial hosts, but few analogous partnerships have been found in marine systems. We report here the genome, phylogenetics, and biogeography of a ubiquitous and novel Rickettsiales species that primarily associates with marine organisms. We previously showed that this bacterium was found in scleractinian corals, responds to nutrient exposure, and is associated with reduced host growth and increased mortality. This bacterium, like other Rickettsiales, has a reduced genome indicative of a parasitic …

Scaphanocephalus-Associated Dermatitis As The Basis For Black Spot Disease In Acanthuridae Of St. Kitts, West Indies, Michelle M. Dennis, Adrien Izquierdo, Anne Conan, Kelsey Johnson, Solenne Giardi, Paul Frye, Mark A. Freeman

Harold W. Manter Laboratory of Parasitology: Library Materials

Acanthurus spp. of St. Kitts and other Caribbean islands, including ocean surgeonfish A. bahianus, doctorfish A. chirurgus, and blue tang A. coeruleus, frequently show multifocal cutaneous pigmentation. Initial reports from the Leeward Antilles raised suspicion of a parasitic etiology. The aim of this study was to quantify the prevalence of the disease in St. Kitts’ Acanthuridae and describe its pathology and etiology. Visual surveys demonstrated consistently high adjusted mean prevalence at 3 shallow reefs in St. Kitts in 2017 (38.9%, 95% CI: 33.8−43.9) and 2018 (51.5%; 95% CI: 46.2−56.9). There were no differences in …

Seal And Polar Bear Behavioral Response To An Icebreaker Vessel In Northwest Greenland, Kate Lomac-Macnair, José Pedro Andrade, Eduardo Esteves

Human–Wildlife Interactions

Icebreaker vessels are important scientific tools, enabling access and research within the polar regions of the world, including the High Arctic. These vessels have the potential to overlap with marine mammal habitats in infrequently studied areas. Marine mammal behavioral responses to icebreaker vessel presence and distance at which responses occur are not well documented or understood. During the Petermann 2015 Expedition on the icebreaker Oden, seal and polar bear (Ursus maritimus) data were collected in Petermann Fjord (Northwest Greenland), the adjacent Nares Strait region, and transit to and from Thule, Greenland over 31 days (July 30 to …

Effects Of Aquatic Acidification On Calcium Uptake In White River Shrimp Litopenaeus Setiferus Gills, Maria-Flora Jacobs

UNF Graduate Theses and Dissertations

Previous research regarding aquatic acidification has examined the protonation of the carbonate and does not consider calcium to be a limiting factor. This is the first study to suggest that pH may affect the uptake of calcium in crustacean gills. This project describes ion transport mechanisms present in the cell membranes of white river shrimp Litopenaeus setiferus gill epithelium, and the effects of pH on the uptake of calcium by these means. Partially purified membrane vesicles (PPMV) of shrimp gills were prepared through a homogenization process that has been used previously to define ion transport in crab and lobster gill …

In The Eye Of The Storm: Houston After Hurricane Harvey, Brandon Tolentino-Serrano

Pomona Senior Theses

Situated in one of the wettest climates in America, Houston, TX has had a long history of heavy rains and unprecedented floods. Unfortunately, floods have become more common over the last few decades as climate change increases the frequency and intensity of hurricanes around the globe. To complicate matters further, Houston has quickly sprawled to accommodate over 2.5 billion people. Rapid urbanization has rendered the landscape even more susceptible to floods through excess concretization and watershed disturbance. This thesis traces the history of the Bayou City in relation to the damages caused by Hurricane Harvey. By mapping out the original …

Changing Oceanic Conditions On The Foraging Patterns Of Cassin’S Auklets, Ptychoramphus Aleuticuschanging Oceanic Conditions On The Foraging Patterns Of Cassin’S Auklets, Ptychoramphus Aleuticus, Clare Flynn

Pomona Senior Theses

Cassin’s auklet (Ptychoramphus aleuticus) reproductive success has been monitored on Southeast Farallon Island (SEFI) for the past 45 years. Their productivity has varied with oceanic conditions. The purpose of this study is to connect how oceanic conditions affect Cassin’s auklet foraging behaviors. The California Current System (CCS) can normally maintain high plankton productivity, and thus high seabird productivity, because of coastal upwelling. I hypothesized that lower upwelling and/or higher sea surface temperatures (SSTs) lead Cassin’s auklets to spend more time on intensive foraging behaviors such as flying and diving, and have less time to spend resting. I also hypothesized that …