Biodiversity Commons^™

A Genomic Analysis Of Bobcat Populations In North America With A Comparison To The Canada Lynx: An Assessment Of Local Adaptation To Unique Ecoregions And Phylogeography, Jennifer C. Broderick

Electronic Theses and Dissertations

Bobcats (Lynx rufus) are an ecologically and genetically diverse species with a large contiguous range throughout North America. The species not only has a wide array of phenotypic variation compared to other mammals, but shows marked adaptability across ecozones with differing ecological influences. It is these various selective pressures in distinctive parts of the continent that have likely led to localized adaptations within the bobcat metapopulations. The species is also marked by its ability to maintain connectivity and populations in anthropogenically developed areas, an advantage it has over other felids, including its close relative the Canada lynx ( …

Splitting Up A Complex Mess: The Effectiveness Of Statistical Analysis On Delimiting Species Complexes, Sara N. Schoen

Masters Theses, 2020-current

Recent studies have highlighted a need for more refined tools in species delimitation. This is especially true when considering diversity within species complexes, where members are morphologically similar and traditional tools have thus far failed to provide clearly defined boundaries between species. This project seeks to refine our traditional tools of species delimitation and apply new tools to the challenges created by species complexes. The focus organisms of this study are the anurans of the Limnonectes kuhlii complex. This species complex comprises more than 25 species of stream frogs from Southeast Asia. Traditionally, morphometrics (particularly linear measures) has been the …

When Water Isn't Wet: The Evolution Of Water Right Mitigation In Washington State, Rachael Osborn, Michael Mayer

Seattle Journal of Technology, Environmental, & Innovation Law

What is water right mitigation?

The allocation of surface and ground water resources for out of stream uses via the western water rights doctrine of prior appropriation comes with serious environmental consequences – depletion of streamflow and aquifers. Over-appropriation by water rights has led to deleterious impacts on natural resources, including salmon survival, water quality, and public uses of state waterways.

Because of the over-appropriated condition of Washington’s rivers and aquifers, the issuance of new water rights has until recently required water-for-water or in-kind mitigation, with the goal to directly compensate for deleterious impacts. Historically, the Water Resources Program of …

Another New Species Of Euscorpius Thorell, 1876 From The Caves Of Croatia And Bosnia-Herzegovina (Scorpiones: Euscorpiidae), With Notes On Biogeography And Cave Ecology, Gioele Tropea, Roman Ozimec

Euscorpius

Another new, subtroglophile scorpion species is described from Croatia, Euscorpius biokovensis sp. n. It is morphologically and ecologically similar to E. feti Tropea, 2013 but can be distinguished from the latter by a lower number of trichobothria (Pv = 8–9, with mostly 8, and usually et = 6) and pectinal teeth (usually Dp = 7 in males and 6 in females). The new species also has a more northern distribution although in some areas the two species overlap. E. biokovensis sp. n. has been found in more than 20 caves in Croatia, which makes it the most common Euscorpius species …

Status Of The Blackstripe (Fundulus Notatus) And Blackspotted (F. Olivaceus) Topminnows In The Ozark Uplands Of Central Missouri, Nathaniel Steffensmeier, Naznin Sultana Remex, Robert Hrabik, David D. Duvernell

Biological Sciences Faculty Research & Creative Works

The topminnow species Fundulus notatus and F. olivaceus have broadly overlapping geographic distributions that extend throughout much of the central and southern United States. In the northern portion of their respective ranges, in Missouri, the regional distributions of the two species coincide largely with recognized ecoregions. In the unglaciated southern half of Missouri, F. olivaceus is distributed throughout Ozark upland habitats while F. notatus is abundant in marginal large river and prairie habitats along the Ozark borders. An exception to this partitioning is the historical report of abundant F. notatus in the Bourbeuse and upper Meramec River drainages within the …

A Contribution To The Macrofungi Of Cloudland Canyon State Park, Peyden Valentine

Honors Theses

I conducted a survey of the macroscopic fungi within Cloudland Canyon State Park, Dade County, GA that consisted of twenty-three forays from May through December of 2019, and one foray in March 2020. The results of my survey add baseline data to our knowledge of the mushrooms present within the park, allow for the future construction of an All Taxa Biodiversity Index, and allow comparisons to other surveys of fungal diversity in similar areas of the Cumberland Plateau: the Tennessee River Gorge Trust (Starrett 2005), and the Lula Lake Land Trust (De Guzman 2000). My survey resulted in an overall …

Diatom Morphology In Light Of A Changing Climate: A Focus On Aulacoseira Crenulata, Brighid Welchans

Honors Program: Senior Projects (Public)

Fossilized diatoms are arguably the most vital proxy record utilized in paleolimnology. Diatoms are unicellular microalgae that are the basis of countless food webs, are invaluable bioindicators, and generate nearly a quarter of global net primary productivity. Diatoms are affected by a variety of environmental factors but there is relatively little research on how environmental conditions impact diatom valve morphology, and in particular whether there is a correlation between incoming light and diatom pore morphology. This report focuses on the Amazon lowland lake Garzacocha, and analyzes the relationship between light levels and the corresponding size of Aulacoseira crenulata pores. We …

Investigating The Effects Of Temperature On Lesser Celandine, Regina Bellian

The Downtown Review: An Interdisciplinary Journal Written and Peer-Reviewed by Mandel Honors College Students at Cleveland State University

This paper explores invasive species Ficaria verna (Lesser celandine) and the effects of temperature on its growth. Trials were completed with two treatments, 13OC cold temperature and 20OC ambient temperature. Germinated bulbils of Lesser celandine were planted on February 15, 2017 and placed in their respective growing chambers. The plants were watered weekly and monitored for growth until harvest on March 29, 2017. Upon harvest, the plants’ height, largest leaf diameter and biomass were measured after extraction from soil and the removal of the leftover soil debris. Average height was found to be 11.66cm for the cold treatment and 5.14cm …

How Do Farmers Experience Agroecology In Rural Communities Of Northern Ecuador?, Neil Michael Ayala Ayala

Latin American Studies ETDs

Agroecology, a concept in continuous evolution embraces science, practice and sociopolitical aspects. Its meaning is gaining space of debate and global interest as an alternative for building sustainable food systems and resilient communities, not only from the environmental perspective, but from all the dimensions of sustainability. The Andes region is recognized for its agrodiversity and for its history of agricultural activity; nevertheless, the effects of unsustainable agricultural practices inspired in the principles of the so called “Green Revolution” are evident. Conventional agriculture has decreased the capacity of resilience of the agroecosystems and their associated communities. Agroecology is often perceived as …

Barcoding Adelpha Immatures To Understand Host Breadth, Connor P. Soderstrom, Elizabeth Song, Rylie Towne

Pacific Undergraduate Research and Creativity Conference (PURCC)

No abstract provided.

Investigating Drivers Of Genetic Structure In Plants: Global, Regional And Local Scales, Diana Gamba-Moreno

Dissertations

Genetic structure within and among plant populations is a critical component of plant biodiversity, informing local adaptation, conservation, and incipient speciation. However, its drivers remain poorly understood, especially across different spatial scales. In my dissertation I examined factors that affect plant population genetic structure at global, regional, and local scales. At the global scale, I performed a literature review of population genetic differentiation (F_ST) in seed plants based on a 337-species dataset with data on F_ST and species traits. Using phylogenetic multiple regressions, I found that F_ST is higher for tropical, mixed-mating, non-woody species pollinated by …

A Basic Ddradseq Two‐Enzyme Protocol Performs Well With Herbarium And Silica‐Dried Tissues Across Four Genera, Ingrid E. Jordon-Thaden, James B. Beck, Catherine A. Rushworth, Michael D. Windham, Nicolas Diaz, Jason T. Cantley, Christopher T. Martine, Carl J. Rothfels

Faculty Journal Articles

Premise

The ability to sequence genome‐scale data from herbarium specimens would allow for the economical development of data sets with broad taxonomic and geographic sampling that would otherwise not be possible. Here, we evaluate the utility of a basic double‐digest restriction site–associated DNA sequencing (ddRADseq) protocol using DNAs from four genera extracted from both silica‐dried and herbarium tissue.

Methods

DNAs from Draba, Boechera, Solidago, and Ilex were processed with a ddRADseq protocol. The effects of DNA degradation, taxon, and specimen age were assessed.

Results

Although taxon, preservation method, and specimen age affected data recovery, large phylogenetically informative …

194— Plant Diversity & Allergies, Catherine Kilada

GREAT Day Posters

The impact of industrialization and its resulting decline in biodiversity may be a contributing factor to the rapidly increasing prevalence of allergies across the United States. This decline in biodiversity reduces the contact between people and various tree species, causing an increase in the number of individuals who experience moderate to severe allergies. I predict there may be a correlation between myriad allergies and geographic location within New York State. Using an online survey distributed to the Geneseo Student Body, I will determine if there are certain areas of New York State that have higher reports of certain allergy types. …

135— Coral-Sponge Interactions On Rocky Point Reef, San Salvador, Bahamas, Michael Harvey, Anna Meichenbaum, Brooke Stickles

GREAT Day Posters

We surveyed the intensity of competition for reef space between sponges and corals at the Rocky Point patch reef adjacent to San Salvador Island, The Bahamas. Our working hypothesis was that, because of a dearth of predators, fast growing, chemically unprotected sponges more likely to be involved in competitive interactions. Results indicate that competition for reef space was widespread, but contrary to our hypothesis no sponge or coral species was disproportionately more involved in these interactions. These results contradict previous studies on Rocky Point reef and in our discussion we propose an explanation for this discrepancy.

Wood-Inhabiting Fungi Of The Eastern Ecuadorian Cloud Forest: Fungal Diversity Comparison Along An Altitudinal Gradient In The Rio Zuñac Reserve, Thane Gehring, Rosa Batalles

DU Undergraduate Research Journal Archive

Wood-inhabiting fungi are responsible for the degradation of dead wood, playing a role in nutrient cycling and nutrient transport making them indispensable to their ecosystem’s health. Fungi are generally understudied, specifically in the tropics despite its proven hotspot in diversity and the importance of conservation. Wood-inhabiting fungi were investigated in the eastern Andean montane cloud forest of Ecuador to determine the biodiversity, distribution, and relation to an altitudinal gradient. Along multiple ridges of EcoMinga’s Rio Zuñac reserve, 13 20x20 meter (0.1-hectare) quadrants between the altitudes of 1300 to 2000 meters were sampled for wood-inhabiting fungi. A total of 175 samples …

A Deeper Meaning For Shallow-Level Phylogenomic Studies: Nested Anchored Hybrid Enrichment Offers Great Promise For Resolving The Tiger Moth Tree Of Life (Lepidoptera: Erebidae: Arctiinae), Nicolas J. Dowdy, Shannon Keating, Alan R. Lemmon, Emily M. Lemmon, William E. Conner, Clare H. Scott Chialvo, Susan Weller, Rebecca B. Simmons, Melissa S. Sisson, Jennifer M. Zaspel

Department of Entomology: Faculty Publications

Anchored hybrid enrichment (AHE) has emerged as a powerful tool for uncovering the evolutionary relationships within many taxonomic groups. AHE probe sets have been developed for a variety of insect groups, though none have yet been shown to be capable of simultaneously resolving deep and very shallow (e.g., intraspecific) divergences. In this study, we present NOC1, a new AHE probe set (730 loci) for Lepidoptera specialized for tiger moths and assess its ability to deliver phylogenetic utility at all taxonomic levels. We test the NOC1 probe set with 142 individuals from 116 species sampled from all the major lineages of …

Driver Of Avian Haemosporidian Diversity And Host Specificity In The Solomon Islands, Xena Marie Mapel

Biology ETDs

Avian haemosporidians are protist parasites that are distributed worldwide. We investigated these parasites in a tropical South Pacific archipelago to answer two questions: 1) Which community characteristics influence haemosporidian diversity; 2) Does host specificity vary across islands? To answer these questions we sequenced a mitochondrial gene and created linear models to establish relationships between select variables and diversity. In addition, we calculated host breadth of each lineage and constructed models to infer predictors of diversity. The percent of infected individuals on each island was correlated with island area. Haemosporidian phylogenetic diversity on a given island was associated with the proportion …

Environmental Dna Metabarcoding Detects Mammal Use Of Stock Tanks And Natural Springs On The Prescott National Forest, K. A. Smith, Berenice Carreras Mendiolea, C. E. Benson, F. B. Anaya

Discovery Day - Prescott

Recent research has shown the viability of environmental DNA (eDNA) analysis as a tool for identifying species presence in aquatic ecosystems. However, there is limited research indicating the feasibility of eDNA as a survey tool in water sources such as springs and stock tanks. Because of the scarcity of water in the high desert landscape of Arizona, natural springs and stock tanks are an important water resource. In this study, we examined whether 16S rRNA metabarcoding could detect mammal eDNA in springs and stock tanks in the Prescott National Forest. During summer 2019, we collected and analyzed water samples at …

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xxiii. Buthus (Buthidae), With Description Of Two New Species, František Kovařík, František Šťáhlavský, Hassan S. A. Elmi

Euscorpius

New data are presented on the distribution of the genus Buthus Leach, 1815 in the Horn of Africa, mainly in Somaliland, acquired during expeditions in 2011–2019. Buthus berberensis Pocock, 1900, for which the exact locality was not known, was collected again. B. zeylensis Pocock, 1900 is restored from synonymy and elevated to species rank, based on a study of 75 recently collected specimens. Two new species, B. pococki sp. n. and B. somalilandus sp. n., are described, fully complemented with color photographs of live and preserved specimens, as well as their habitats. In addition to the analyses of external …

Scorpion Predation In Cuba: New Cases And A Review, Tomás M. Rodríguez-Cabrera,, Rolando Teruel, Ernesto Morell Savall

Euscorpius

The ecology of Cuban scorpions is very insufficiently studied and the scarce existing information on their natural enemies is dispersed in the literature. However, scorpions in general are well known to play an important role both as predators and prey in natural ecosystems. Herein we present new instances of predation on different species of scorpions in Cuba, and a review on the topic