Biodiversity Commons^™

Identifying The Human Homologs Of Yeast Rab Proteins Ypt10 & Ypt11 And A Global-Scale Louse Endosymbiont Genome Variation, Nathaniel P. Smith

Theses and Dissertations

Amyotrophic lateral sclerosis (ALS) is a late-onset fatal neurodegenerative disease that causes loss of upper and/or lower motor neurons, and currently has no treatment or cure available. Over 90% of cases occur spontaneously with unknown causes, highlighting the complexity of the disease, and only 10% of cases are linked to heritable genetic mutations. Numerous ALS-linked genes are conserved through evolution, and model organisms may therefore provide opportunities to understand disease pathology at a molecular or cellular level, proving instrumental in identifying therapeutic targets. ALS subtype 8 (ALS8) is caused by an autosomal dominant P56S mutation in the VAPB gene that …

Phylogenetic And Geographic Relationships Of Cheilostome Bryozoans In The Eastern Pacific, Hannah E. Lee

Cal Poly Humboldt theses and projects

The phylum Bryozoa is an incredibly diverse group of marine invertebrates with a widespread global distribution that is well suited for evolutionary studies but whose phylogenetic relationships are still poorly understood. Although recent studies on bryozoan taxonomies and phylogenies have increased, there is still a lack of assessment of species found at shallow water (<1 m) to intertidal depths. In this study, I aimed to expand the taxonomic sampling and assessment of the phylogenetic diversity of cheilostome bryozoans along the California coastline by utilizing mitochondrial DNA as well as inferring potential correlations between species presence and dispersal range both within and between rocky outer coast and sheltered harbor habitats. Illumina high-throughput sequencing was used to produce mitogenomes for cheilostome bryozoan samples collected off rocks from two rocky intertidal sites and off settlement panels from two harbor sites. Phylogenetic analyses generated evolutionary hypotheses of species relationships alongside geographic mapping of their distribution. This study identified 15 distinct species that represent 10 different families to form the first comprehensive phylogeny for multiple bryozoan families in California across a total range of approximately 973 km of coastline. Three genetically distinct species were found at multiple sites that are separated by a combination of rocky shores and sandy beaches, which indicates that the dispersal range of these species are not limited by geographic barriers along the coast of California. These results provide a future opportunity for further integration of this data with the phylogenies generated in this study to examine more robust evolutionary hypotheses for the phylogenetic and geographic relationships of Californian bryozoan species.

Differentiating The Effects Of Two Non-Native Fish In The Turnbull National Wildlife Refuge, Sarah Richardson

EWU Masters Thesis Collection

This study seeks to determine the individual effects of two non-native fish, the brook stickleback, Culaea inconstans, and pumpkinseed, Lepomis gibbosus, on the aquatic invertebrates and food webs of Turnbull National Wildlife Refuge (TNWR). Ten ponds were analyzed and compared with stable isotope analysis and invertebrate abundance data. Three ponds were chosen to represent each of the following categories: fishless, brook stickleback invaded (BS), and coinvaded, along with a single pumpkinseed (PS) pond. Overall, δ[superscript]13C and δ[superscript]15N values increased in invaded ponds, indicating shifts in the zooplankton community structure and the carbon source of predatory invertebrates. Mean δ[superscript]13C was the …

A Characterization Of The Sandy Beach Surf Zone Fish Community And Their Ecology In Northern California And The Effects Of Marine Protected Areas, Katie B. Terhaar

Cal Poly Humboldt theses and projects

Historically written off as dull and homogenous, the dynamics of the sandy beach surf zone remains under studied world-wide. Northern California has been no exception to this global standard, as the sandy beach surf zone ecosystem in this region has yet to be characterized, and the effect of Marine Protected Areas (MPAs) on the fish and macroinvertebrate community fully ascertained.

Considered data-poor by local wildlife officials, commercially, recreationally and culturally important Amphistichus rhodoterus (redtail surfperch) and common Hyperprosopon ellipticum (silver surfperch) utilize the sandy beach surf zone in Northern California. Little is known about the effect of various environmental factors, …

Population Assignment Of Entrained Migratory Westslope Cutthroat Trout In North Idaho, Craig D. Wells

EWU Masters Thesis Collection

The Clark Fork-Pend Oreille River basin of northeastern Washington and the Idaho Panhandle historically supported a robust metapopulation of Westslope Cutthroat Trout (WCT) Oncorhynchus clarkii lewisi, a western native salmonid of high cultural and economic value. The construction of impassible hydroelectric dams and smaller in-stream barriers has prevented the return of migratory WCT to spawning tributaries, likely leading to the fragmentation of this metapopulation over the last 100 years. One such impassible barrier is Albeni Falls Dam near Newport, Washington. Completed without fish passage capabilities in 1955, Albeni Falls Dam has been of interest as a site for restoring fish …

Environmental Effects On Constructed Wetland Microbial Diversity And Function In The Context Of Wastewater Management, Sandrine Grandmont-Lemire

Cal Poly Humboldt theses and projects

Microbial communities play a crucial role in ecosystems, yet we know little about how microbial diversity influences ecosystem functioning. An important gap in our understanding is how environmental change affects microbial Biodiversity-Ecosystem Function relationships (BEF). These complex interactions between microbial biodiversity and ecosystem function can influence major biogeochemical processes, such as the nitrogen cycle in wetland ecosystems, which play an important role in managing wastewater. To address the effect of biodiversity on function, my study investigates the BEF relationships between microbial diversity and the function in terms of ammonia removal from wastewater at the Arcata Wastewater Treatment Facility (AWTF) both …

Modernizing Fish Surveys: Evaluating How Reliable Environmental Dna Sampling Is In Monitoring Fish Populations, Alicia Cozza

EWU Masters Thesis Collection

No abstract provided.

Small Mammal Communities Of Restored And Natural Wetlands In West Virginia, Krista Noe

Graduate Theses, Dissertations, and Problem Reports (ETD)

Wetland restoration is commonly practiced as part of conservation programs or wetland mitigation, which attempts to offset human-created losses of natural wetlands. However, because of the intrinsic and human-derived value of wetlands, it is critical to determine whether these wetlands truly act similarly to natural wetlands. One role of wetlands is to provide habitat for a diverse array of wildlife species. Small mammals are often overlooked taxa in wetland restoration efforts. However, they are essential to the wetland system because they influence vegetation and are prey for higher trophic level wildlife. I discuss considerations of restored wetlands, wildlife responses to …

Composition, Population Structure And Regeneration Potential Of Tree Species In Oak-Dominated Mixed Forests Of Rajouri District In Jammu And Kashmir, India, Mohd Junaid Jazib, Javed Manzoor

Journal of Bioresource Management

The study was carried out to explore the diversity and regeneration potential of trees species in mixed Oak forest of Rajouri district of Jammu and Kashmir (India). A total of 20 tree species were recorded from the area dominated by various species of oak particularly Quercus leuchotrichophora. Quercus leuchotrichophora shows maximum values of density, basal cover and IVI. In different localities, it has different groups of associates like Q. floribunda, Q. semecarpifolia, Q. glauca, Buxux wallichiana, Pinus roxburghii, Aesculus indica, Rhododendron arboreum, etc. Majority of the species show very poor regeneration and thus demands for immediate implementation of appropriate conservation …

Biodiversity Of The Blattopteran Fauna In The Chelia Cedar Forest (The Aures - Eastern Algeria), Nadia Aberkane, Sarra Habbachi, Wafa Habbachi, Nora Belkhiri, Naama Frah

Journal of Bioresource Management

The cedar forests in Algeria represent a model of forests very rich in entomological fauna and especially dictyopterans, notably blattopterans. In the cedar forest of Chelia in the Aurès Mountains, we chose three different sites according to altitude (2020 m, 1920 m, 1820 m) in order to collect existing cockroaches using the sight-hunting method (twice a month). The inventory allowed us to capture more than 1220 cockroaches and we were able to identify three genus (Dziriblatta, Phyllodromica ,Loboptera) and seven species: Dziriblatta stenoptera, Dziriblatta nigrivintris, Phyllodromica zebra, Pyllodromica trivittata, Phyllodromica sp, Loboptera angulata, Loboptera alluaudi, of which …

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xxvii. Lanzatus Huluul Sp. N. From Somaliland (Buthidae), František Kovařík, Graeme Lowe

Euscorpius

The rare Horn of Africa buthid genus Lanzatus Kovařík, 2001 was newly collected in Somaliland in two localities. We describe a new species Lanzatus huluul sp. n. fully illustrated with color photos showing its morphology, habitus, hemispermatophore and collection areas.

Status And Relative Abundance Of Alabama Shad, Alosa Alabamae, In Alabama, Steven J. Rider, Travis R. Powell, Jason E. Dattilo, Gregory T. Miles

Southeastern Fishes Council Proceedings

Alabama Shad, Alosa alabamae, an anadromous fish found historically from the Mississippi River basin eastward to the Suwanee River, has experienced population declines and even extirpation in some States. In Alabama, A. alabamae have been found in rivers of the Mobile River basin and Conecuh, Yellow, and Choctawhatchee rivers in the coastal Gulf Plain. We report on our directed and targeted efforts to assess the current status and relative abundance of A. alabamae in Alabama and compare our results to past A. alabamae surveys in Alabama. We completed 52 sampling trips and expended 129.5 hours of boat-electrofishing effort targeting …

An Assessment Of The Diverse Freshwater Turtle Fauna Of Mississippi, Lucas Haralson

Master's Theses

Nestled within the Southeastern United States Turtle Priority Area, Mississippi boasts impressive freshwater turtle diversity and is home to 8.6% of extant turtle species. Despite this impressive richness, few studies have assessed freshwater turtle assemblages in this hotspot of aquatic diversity. This research aimed to elucidate the distributions and abundances of freshwater turtle species through a statewide investigation of all major river drainages of the state. Using baited hoop nets (90 cm and 120 cm diameter), turtles were collected, identified to species and sex, and measured, before being released. Turtle assemblages were assessed in both lotic and lentic environments from …

A New Species Of Vaejovis From The Mule Mountains Above Bisbee, Arizona (Scorpiones: Vaejovidae), Brandon T. Myers, Richard F. Ayrey

Euscorpius

No abstract provided.

A Global Agenda For Advancing Freshwater Biodiversity Research, Alain Maasri, Sonja C. Jähnig, Hendrik Freitag, 93 Co-Authors

Biology Faculty Publications

Global freshwater biodiversity is declining dramatically, and meeting the challenges of this crisis requires bold goals and the mobilisation of substantial resources. While the reasons are varied, investments in both research and conservation of freshwater biodiversity lag far behind those in the terrestrial and marine realms. Inspired by a global consultation, we identify 15 pressing priority needs, grouped into five research areas, in an effort to support informed stewardship of freshwater biodiversity. The proposed agenda aims to advance freshwater biodiversity research globally as a critical step in improving coordinated actions towards its sustainable management and conservation.

American Burying Beetle, Plant Richness, And Soil Property Responses To Collapse Of Juniperus Virginiana Woodlands With Fire, Alison K. Ludwig

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Grasslands are declining in the Great Plains due to land use changes, woody plant encroachment, and loss of historic fire cycles. Prescribed burn associations have utilized prescribed fire to collapse invading woodlands and allow the restoration of grasslands. This fire is considered “extreme” because it is capable of changing the structure and function of an ecosystem. Our study site is the Loess Canyons Experimental Landscape, a long-term, ecoregion-scale experiment to apply prescribed fire across the region to restore grasslands. The Nebraska Natural Legacy Project established the Loess Canyons ecoregion as a Biologically-Unique Landscape in 2005 with the state’s wildlife action …

Rehydrating The Landscape At Yanget, Geraldton, Western Australia, Jamie Bowyer, Rod O'Bree

Natural resources published reports

Rod and Bridie O’Bree’s farm is 25 km east of Geraldton in the Northern Agricultural Region of Western Australia. The long-term rainfall average is 486 mm although that has dropped to 354 mm over the last 30 years. They run a 150 head beef cattle herd, fatten 500-700 lambs annually and have a 40-60 head horse stud on the farm. They purchased the farm early in 2008 after one of the worst droughts in the area. There was little to no vegetation, brown or green, across the farm and all of the water from a 25 mm rain event ran …

Northern Bobwhite Occupancy Patterns On Multiple Spatial Scales Across Arkansas, Ellery V. Lassiter, Marcus Asher, Grace Christie, Connor Gale, Andrhea Massey, Cody Massery, Christopher R. Middaugh, John T. Veon, Brett A. Degregorio

Biological Sciences Faculty Publications and Presentations

Northern bobwhite Colinus virginianus populations have been rapidly declining in the eastern, central, and southern United States for decades. Land use change and an incompatibility between northern bobwhite resource needs and human land use practices have driven declines. Here, we applied occupancy analyses on two spatial scales (state level and ecoregion level) to more than 5,000 northern bobwhite surveys conducted over 6 y across the entire state of Arkansas to explore patterns in occupancy and land use variables, and to identify priority areas for management and conservation. At the state level, northern bobwhite occupied 29% of sites and northern bobwhite …

Habitat Associations And Activity Patterns Of Herpetofauna In The Central Platte River Valley, Nebraska, With Notes On Morphometric Characteristics, Jenna M. Malzahn, Andrew J. Caven, Sean Warren, Bethany L. Ostrom, Dennis M. Ferraro

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The Central Platte River Valley (CPRV) is a unique and biologically important ecoregion, and several studies have conducted localized herpetofauna species inventories. However, there has been significantly less effort to quantify the habitat associations or activity patterns of these species. Habitat associations and activity patterns vary regionally and provide important information for ecosystem management. We deployed a total of 38 traps of 5 different types (pitfall, funnel, hoop, box, and coverboard) across 11 sites (7 terrestrial, 4 aquatic) for an 8-week period in June and July 2019. Our exploratory analyses used generalized linear models with a quasibinomial distribution to examine …

Amphibians And Reptiles As Prey Of Heteroctenus Junceus (Scorpiones: Buthidae), With A Summary Of Vertebrate Predation By Scorpions In The West Indies, Tomás M. Rodríguez-Cabrera,, Ernesto Morell Savall, Rolando Teruel

Euscorpius

Vertebrate predation by scorpions has been scarcely documented in the literature. Contrary to large scorpions of the genera Centruroides, Hadrurus, Opistophthalmus, and Pandinurus from North America and Africa, which are capable of subduing even small rodents and bats, West Indian scorpions of the genera Centruroides, Heteroctenus, and Tityus seem to limit their prey to amphibians and reptiles. Herein we present new cases of a frog (Osteopilus septentrionalis; Hylidae) and three lizards (Anolis allisoni, A. ophiolepis, and A. sagrei; Dactyloidae) preyed upon by Heteroctenus junceus (Herbst, 1800), at the time we summarize all cases of vertebrate …