Biodiversity Commons^™

Prolonged Intensive Dominance Behavior Between Gray Wolves, Canis Lupus, L. David Mech, H. Dean Cluff

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Dominance is one of the most pervasive and important behaviors among wolves in a pack, yet its significance in free-ranging packs has been little studied. Insights into a behavior can often be gained by examining unusual examples of it. In the High Arctic near Eureka, Nunavut, Canada, we videotaped and described an unusually prolonged and intensive behavioral bout between an adult male Gray Wolf (Canis lupus) and a male member of his pack, thought to be a maturing son.With tail raised, the adult approached a male pack mate about 50 m from us and pinned and straddled this …

Saving Saba Bank: Policy Implications Of Biodiversity Studies, Paul C. Hoetjes, Kent E. Carpenter

Biological Sciences Faculty Publications

Saba Bank has always been an area of special importance to the neighboring island of Saba in the Netherlands Antilles. Sabans traditionally fished on the Bank as far back as 1907, but increasing foreign fishing pressures on the Bank in the 1970s and 1980s forced many Saban fishermen out. Concerns were compounded by the suspicion that shipping was also damaging the benthic habitat of the bank. Fishery legislation, enacted in 1996, brought an end to unlicensed fishing and established Coast Guard enforcement on the Bank, but also led to protests from neighboring countries that previously fished on the Bank.Research was …

A Taxonomic Revision Of Orthotrichaceae (Musci) With Contributions To The Biosystematics Of Macromitrium Brid. In Malaysia., Yong Kien Thai

Student Works (2010-2019)

Macromitrium (Orthotrichaceae) is a large genus variously divided into infrageneric groups by different authors, resulting in a complex classification which has not included many Malaysian species. This study reviews the taxonomy of Malaysian taxa and extent of morphological variation in relation to the type group. A molecular phylogenetic study was carried out to determine if Malaysian Macromitrium species represented a homogeneous taxonomic grouping. A cladistic analysis of morphological characteristics was attempted for identifying well-defined groups and their key character states. Molecular studies included Maximum Parsimony and Bayesian Inference analyses of two chloroplast DNA regions (rps4 gene and trnL-trnF interspecific region) …

Taxonomy And Biogeography Of Sundaland Gardenia (Rubiaceae)., Low Yee Wen

Student Works (2010-2019)

In Southeast Asia, the genus Gardenia J.Ellis (Rubiaccae) is poorly understood and documented due to a lack of country revisions, contentious species delimitations and accumulation of poorly identified material in herbaria. This study reviewed the taxonomic history and position of the genus, and revised the taxonomy of Sundaland species (including those of Sumatra. the Malay Peninsula, Java_ Borneo, Palawan and adjacent islands). It includes a survey and cladistic study of morphological characteristics, and phylogenetic ana lyses using two chloroplast regions (atpB-rbcL and trnT-F) and the nuclear ITS region of representative species from Sundaland and adjoining regions. Twelve species are native …

Increased Weed Diversity, Density And Above-Ground Biomass In Long-Term Organic Crop Rotations, Samuel E. Wortman, John L. Lindquist, Milton J. Haar, Charles A. Francis

Department of Agronomy and Horticulture: Faculty Publications

While weed management is consistently a top priority among farmers, there is also growing concern for the conservation of biodiversity. Maintaining diverse weed communities below bioeconomic thresholds may provide ecosystem services for the crop and the surrounding ecosystem. This study was conducted to determine if weed diversity, density and biomass differ within and among organic and conventional crop rotations. In 2007 and 2008, we sampled weed communities in four long-term crop rotations near Mead, Nebraska, United States using seedbank analyses (elutriation and greenhouse emergence) and above-ground biomass sampling. Two conventional crop rotations consisted of a corn (Zea mays) …

Ecology Of Mayfly (Insecta : Ephemeroptera) Nymphs In Three Streams Of Ulu Gombak Forest Reserve, Peninsular Malaysia., Sree Gayathree Selvantharan

Student Works (2010-2019)

Three sampling stations with various environmental quality gradients in Ulu Gombak Forest Reserve, Selangor, Peninsular Malaysia were selected in this study: Sungai Gombak, Anak Sungai Gombak and Sungai Batu 19. A total of six genera of ephemeropteran nymphs were found from the mentioned streams: Baetis sp. (Baetidae) (232), Thalerosphyrus sp. (Heptageniidae) (925), Campsoneuria sp. (Heptageniidae) (1432), Neurocaenis sp. (Tricorythidae) (471), Platybaetis sp. (Baetidae) (12) and Prosopistoma sp. (Prosopistomatidae) (1). The most dominant family of ephemeropteran nymphs is Heptageniidae while Neurocaenis sp. (Tricorythidae) were the only nymphs that showed significant difference in abundance between all three streams (p=0.05) using student t-test. …

Isolation And Characterization Of Microsatellite Loci From Wild Striped Snakehead (Channa Striata)., Yasmeen Sameer Mahmoud Salah

Student Works (2010-2019)

Channa striata (better known as Haruan in Malaysia), is a freshwater species that is well known as a protein source and also for its pharmaceutical value among wounded patients. Unfortunately stocks have declined over the past few years, thus an in-depth study is needed to rule out genetic irregularities that might be causing the slow extinction of the species. This study was conducted for the purpose of studying the population diversity and genetic structure of Channa striata (striped snakehead) in seven different locations around the peninsular of Malaysia. Microsatellite markers were isolated and identified using Random Amplified Microsatellite (RAM) primers. …

Isolation And Characterization Of Actinobacteria From Soil Samples Of Signy Island, Antarctica., Pan Shing Yi

Student Works (2010-2019)

In this study, ninety five actinobacterial isolates were cultured from seven soils samples collected on Signy Island, maritime Antarctica. Nine different isolation media were used and the isolates plates were incubated at 15ºC for up to four months. SCN agar serves as the better media for the isolation of actinobacteria. Presence of actinobacteria in the soil samples was also detected using PCR with actinobacteria specific primers. The actinobacterial isolates were characterized based on morphology (Gram-stain, coverslip examination, colour grouping), analysis of DAP isomers, antibacterial activities and by molecular methods (ARDRA, analysis of 16S rRNA sequence and detection of NRPS gene). …

Application Of Solid-Phase Microextraction For The Analysis Of Polycyclic Aromatic Hydrocarbons In Hyophila Involuta As A Natural Biosensor., Elizabeth Fong Yew Mei

Student Works (2010-2019)

This work describes a simple and rapid extraction method by using solid-phase microextraction (SPME) technique for the determination of polycyclic aromatic hydrocarbons (PAHs) from mosses of Hyophila involuta which is found commonly and abundantly throughout Peninsular Malaysia. Mosses have been chosen in our study since they are effective bioindicators as they take up nutrients and pollutants directly from the atmosphere and they have no root system. These properties make them ideal for evaluating pollutant levels in the air over a monitored period of time. This study has been developed and optimized based on the extraction of the analytes of interest …

Adsorption Of Lead (Ii) By A Non-Living Algal Biomass., Mudher A Hussein

Student Works (2010-2019)

Conventional techniques for removing dissolved heavy metals are only practical and cost-effective when applied to high strength wastes with heavy metal ion concentrations greater than 100 ppm. The possibility of using a non-living algal biomass to solve this problem was studied. Lead(II) was used in this study because it has been reported to cause several disorders in human. The non-living algal biomass was obtained from the filamentous green alga Spirogyra neglecta. The effects of initial concentration and contact time, pH, and temperature on the adsorption of lead(II) by the non-living algal biomass were studied. The equilibrium isotherms and kinetics were …

Diversity And Antioxidant Activity Of Trametes Fr. In Malaysia., Noraswati Mohd Nor Rashid

Student Works (2010-2019)

Research on antioxidant properties as a natural antioxidant, particularly in polypores, have been widely done since the past decade. It is known that antioxidant capacity is essential in protecting organisms and cells from damage brought on by oxidative which is believed to be the cause for ageing and degenerative diseases. In this study, biodiversity and antioxidant activity of Malaysian Trametes spp. which is from the group of polypores were investigated. Polypores were collected in Peninsular Malaysia forests from the year 2006 until 2007. The species were identified by taxonomic keys based on macromorphology and micromorphology analysis. Trametes hirsuta, T. pocas, …

A Systematic Study Of Fagraea Sensu Lato And A Revision Of The Peninsular Malaysian Taxa., Sugumaran Manickam

Student Works (2010-2019)

systematic study of the Peninsular Malaysian species of Fagraea sensu lato was undertaken. This was done in the light of recent revisionary work done for Borneo that documented 20 new species and demonstrated that previous species concepts for Fagraea were too broad. Parallel to this the distinction of the subgeneric groups recognised as sections, i.e., Cyrtophyllum, Fagraea and Racemosae, were investigated with molecular phylogenetic methods. Representative taxa from the Malay Peninsula and Borneo augmented by sequences from other taxa in the same subtribe and tribe were used in the molecular analysis. Gene sequences from ITS, trnL–F (trnL intron + trnL–F …

Diversity Of Boletaceae In Peninsular Malaysia., Chan Hong Twu

Student Works (2010-2019)

The Boletaceae (Basidiomycetes) s.l. is a large family of putrescent mushrooms with pores. Members of this well-recognized family form one of the largest, critical fungal components of obligate, symbiotic mycorrhizal communities throughout the temperate and tropical forest ecosystems of the world. They are intimately involved with basic ecosystem processes such as nutrient cycling, nutrient uptake, and decomposition of organic matter. Favourable temperature and humidity conditions in Asian tropical forest support a wide diversity of boletes. However, the seasonality of fruiting, short-lived and often solitary fruiting bodies are major problems encountered when documenting their diversity in tropical forests. The diversity of …

Light Whole Genome Sequence For Snp Discovery Across Domestic Cat Breeds, James C. Mullikin, Nancy F. Hansen, Lei Shen, Heather Ebling, William F. Donahue, Wei Tao, David J. Saranga, Adrianne Brand, Marc J. Rubenfield, Alice C. Young, Pedro Cruz, Carlos Driscoll, Victor David, Samer W. K. Al-Murrani, Mary F. Locniskar, Mitchell S. Abrahamsen, Stephen J. O'Brien, Douglas R. Smith, Jeffrey A. Brockman

Biology Faculty Articles

Background

The domestic cat has offered enormous genomic potential in the veterinary description of over 250 hereditary disease models as well as the occurrence of several deadly feline viruses (feline leukemia virus -- FeLV, feline coronavirus -- FECV, feline immunodeficiency virus - FIV) that are homologues to human scourges (cancer, SARS, and AIDS respectively). However, to realize this bio-medical potential, a high density single nucleotide polymorphism (SNP) map is required in order to accomplish disease and phenotype association discovery.

Description

To remedy this, we generated 3,178,297 paired fosmid-end Sanger sequence reads from seven cats, and combined these data with the …

How Birds Combat Ectoparasites, Dale H. Clayton, Jennifer A. H. Koop, Christopher W. Harbison, Brett R. Moyer, Sarah E. Bush

Harold W. Manter Laboratory of Parasitology: Library Materials

Birds are plagued by an impressive diversity of ectoparasites, ranging from feather-feeding lice, to feather-degrading bacteria. Many of these ectoparasites have severe negative effects on host fitness. It is therefore not surprising that selection on birds has favored a variety of possible adaptations for dealing with ectoparasites. The functional significance of some of these defenses has been well documented. Others have barely been studied, much less tested rigorously. In this article we review the evidence--or lack thereof--for many of the purported mechanisms birds have for dealing with ectoparasites. We concentrate on features of the plumage and its components, as well …

Building The Genomic Base-Layer Of The Oral “Omic” World, Forsyth Metagenomic Support Consortium, Jacques Izard

Department of Food Science and Technology: Faculty Publications

With the shift of molecular technologies directed toward the understanding of greater biological complexity of the oral cavity, a knowledge gap was created by the lack of genomic data from the diverse oral microorganisms. To facilitate and enable the interpretation of metagenomic, transcriptomic, and proteomic data generated or soon to be generated from oral biofilms, we are providing reference genomic information from phylogenetically diverse oral bacterial isolates. This work, initiated by the National Institute of Dental and Craniofacial Research as an isolated effort, is now part of the Human Microbiome Project. The goal of this effort is the public release …

Migration Of Northern Yellowstone Elk: Implications Of Spatial Structuring, P. J. White, Kelly M. Proffitt, L. David Mech, Shaney B. Evans, Julie A. Cunningham, Kenneth L. Hamlin

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Migration can enhance survival and recruitment of mammals by increasing access to higher-quality forage or reducing predation risk, or both. We used telemetry locations collected from 140 adult female elk during 2000– 2003 and 2007–2008 to identify factors influencing the migration of northern Yellowstone elk. Elk wintered in 2 semidistinct herd segments and migrated 10–140 km to at least 12 summer areas in Yellowstone National Park (YNP) and nearby areas of Montana. Spring migrations were delayed after winters with increased snow pack, with earlier migration in years with earlier vegetation green-up. Elk wintering at lower elevations outside YNP migrated an …

Proportion Of Calves And Adult Muskoxen, Ovibos Moschatus Killed By Gray Wolves, Canis Lupus, In July On Ellesmere Island, L. David Mech

United States Geological Survey, Northern Prairie Wildlife Research Center: Publications

Generally Gray Wolves (Canis lupus L., 1758) tend to focus predation on young-of-the-year ungulates during summer, and I hypothesized that wolves preying on Muskoxen (Ovibos moschatus Zimmerman, 1780) in summer would follow that trend. Over 23 July periods observing wolves on Ellesmere Island, Nunavut, Canada, I found that packs of 2-12 adult wolves killed seven calves, one yearling, and five adult muskoxen at distances of 2.9 to 32 km from their current dens and pups. Given a possible bias against finding calves because of their fewer remains, these results do not necessarily refute the hypothesis, but they do …

New Species In The Genus Monoecocesuts (Cestoda: Anoplocephalidae) From Neotropical Rodents (Caviidae And Sigmodontidae), Terry R. Haverkost, Scott Lyell Gardner

Scott L. Gardner Publications

Anoplocephalid cestodes have a worldwide distribution, but relatively few species are known from South American rodents. By examining the collections of the Harold W. Manter Laboratory of Parasitology and the United States National Parasite Collection, 6 new species of Monoecocestus Beddard, 1914, are described, along with a redescription of Monoecocestus mackiewiczi Schmidt and Martin, 1978, based on the type specimens. The discussion includes commentary about uterine development, an important taxonomic character of the family, the vaginal dilation in immature segments (a character of potential taxonomic importance), and the implication of host usage to the evolutionary history and biogeography of species …

Biodiversity Assessment Of The Fishes Of Saba Bank Atoll, Netherlands Antilles, Jeffrey T. Williams, Kent E. Carpenter, James L. Van Tassell, Paul Hoetjes, Wes Toller, Peter Etnoyer, Michael Smith

Biological Sciences Faculty Publications

Biodiversity surveys were conducted on Saba Bank, Netherlands Antilles, to assess ichthyofaunal richness and to compare with published surveys of other Caribbean localities. The primary objective was to estimate the total species richness of the Saba Bank ichthyofauna. A variety of sampling techniques was utilized to survey the fish species of both the visually accessible megafauna and the camouflaged and small-sized species comprising the cryptic ichthyofauna. Based on results presented herein, the number of species known on Saba Bank is increased from 42 previously known species to 270 species. Expected species-accumulation curves demonstrate that the current estimate of species richness …