Life Sciences Commons^™

Investigation Of Perennial Clover Living Mulch And Reduced Tillage Effects On Weed Suppression, Crop Metrics, And Yield Of Organic Cabbage And Sweet Corn In The Northern Great Plains, Kristina Harms

Electronic Theses and Dissertations

Vegetable farmers often face weed management and soil health challenges, such as nitrate leaching, soil compaction, and top-soil loss. Sustainable agriculture is a forefront of innovation compared to conventional agriculture. Living mulches, non-cash crops grown alongside cash crops, have demonstrated weed suppression and impact on the promotion of sustainable agriculture. Yet studies have not evaluated established living mulch systems on cash crop quality and yield. This study conducted in 2023, 2024, and 2025 at SDSU Southeast Research Farm, Beresford, SD, USA evaluates the impact of established ‘Dynamite’ red clover (Trifolium pratense), ‘Domino’ white clover (T. repens), and ‘Aberlasting’ white × …

Chemical Load: An Unseen Herbicide Filter In Restored Prairies?, Rylie Franklin

Electronic Theses and Dissertations

Community Assembly Theory is a framework used to describe the process by which species from a regional species pool disperse and encounter various abiotic and biotic conditions that act as filters, limiting which species will populate a specific local community. Prairie restoration success can be improved by understanding abiotic and biotic filters. As agricultural practices have adopted integrated weed management plans, that include the use of both chemical and non-chemical techniques, another filter needs to be considered during restoration: the chemical load of soils, i.e., herbicide residue from recent on-site applications and herbicide drift from adjacent areas. To examine the …

The Role Of Resistance Training In Managing Menopause-Related Changes, Alyson K. Strauss

Honors Undergraduate Theses

Resistance training serves as a critical non-pharmacological strategy for mitigating the physiological and psychological declines associated with the menopausal transition. This natural biological phase, marked by declining estrogen levels, typically leads to accelerated bone mineral density loss, sarcopenia, metabolic regulation disturbance, and heightened mood disturbances. To evaluate the efficacy of targeted exercise interventions, a systematic review was conducted following PRISMA guidelines. From an initial pool of 60 relevant articles, 13 studies met the specific inclusion criteria, focusing on structured resistance training protocols for perimenopausal, menopausal, and postmenopausal cohorts.

The synthesis of these studies indicates that resistance training is a highly …

Friends In Niche Places: An Examination Of Anole Abundance And Habitat Use In An Urban Environment Using Point Transect Distance Sampling, Ethan Gau

Honors Undergraduate Theses

Lizards in the genus anolis occupy a wide range of ecological niches, often sharing the same environment due to niche partitioning. In central Florida, the main species of anoles found are the native A. carolinensis and the invasive A. sagrei, two generalist anole species that partition into trunk-crown and trunk-ground niches in each other’s presences respectively. I surveyed the UCF main campus using Apollo Circle as the border for my study area, and I used point sampling to estimate the population abundance and density, while also collecting data on perch substrate, height, and canopy coverage. Population estimates for A. …

Differing Circulating Microrna Profiles Of Long-Lived Polish Populations, Fabrizzio Lijeron-Herrera

Honors Undergraduate Theses

Exceptional longevity, defined as a lower biological age relative to chronological age and maintenance of functional capacity or a slowing of functional decline, is a phenotype most readily observed in centenarians and nonagenarians. These individuals exhibit a phenomenon known as compressed morbidity, spending substantially less time in poor health compared to younger elderly populations, thus representing a unique human model of delayed aging. Circulating microRNAs (miRNAs), potent post-transcriptional regulators of molecular pathways, have emerged as important modulators of aging-related pathways; however, no study has comprehensively profiled miRNAs from serum in long-lived individuals from Central Europe. In particular, Polish populations present …

Recurrence And Co-Occurrence Of Enhancer-Promoter Interactions Across Human Samples, Satvik Gunjala

Honors Undergraduate Theses

Experimental mapping of enhancer-promoter interactions (EPIs) is resource-intensive, and current computational prediction methods struggle with intrinsic genomic complexity and reliance on limited training data. To address this bottleneck and provide insights for improved computational methods, this study systematically analyzed chromatin contact datasets to investigate the recurrence and co-occurrence of enhancer-promoter interactions across human samples. Putative interactions were evaluated across two HiChIP datasets comprising 218 total samples and one Hi-C dataset comprising 266 samples to assess recurrence across samples and assess sequencing depth related to unique EPIs. Additionally, a preliminary item-based collaborative filtering recommender model was developed to assess co-occurrence patterns …

Quantifying Amendment Impact On Microbial Respiration Rate, Qwynn Starrwalker

Honors Undergraduate Theses

Wetlands play a critical role in the global carbon cycle by acting as carbon sinks, where the flooded anaerobic conditions cause slow microbial respiration compared to other soils. Comparatively more carbon is stored in the soil as organic matter than is released as carbon dioxide (CO₂). Making wetland pools of soil organic matter less available to microbes for respiration could reduce overall atmospheric CO₂ and slow global warming. This study examined the effect of kaolinite, goethite, and lime on microbial respiration rates in wetland soils under alternating hydrologic conditions. Homogenized soil from a cypress dome was separated …

The Role Of The Amygdala In Huntington Disease-Associated Aggression, Luis Torres

Honors Undergraduate Theses

Huntington disease (HD) is a fatal neurodegenerative disorder caused by a trinucleotide CAG expansion in the huntingtin gene (HTT). HD is characterized by motor, cognitive, and psychiatric symptoms that significantly impact patient and caregiver quality of life. Psychiatric symptoms, including depression, anxiety, and irritability, are common manifestations of HD and can emerge years before the onset is clinically diagnosed. Aggression is a common and challenging psychiatric symptom in HD, often misunderstood and associated with caregiver stress, early institutionalization, and reduced quality of life. Despite its clinical impact, aggression in HD lacks effective, targeted treatment options. Similar to HD …

Shedding Light On Cellular Glycolysis Pathway Kinetics: Combining Kinetic, Mechanistic Modelling Approaches With Label Free Microspectroscopic Imaging. (Spectralomics), Nitin Patil

Doctoral

Cellular metabolism and its intricate biochemical mechanisms which allow the conversion of nutrients into energy to sustain life are well understood, leading to numerous breakthroughs in science and technology, human health and wellbeing. From an industrial perspective the pathway kinetics are significant for monitoring cellular bioprocesses, screening desired metabolite phenotypes in drug discovery processes, etc.

An initial review of glycolysis pathway kinetics highlighted the lack of sophisticated approaches to monitor the metabolic pathway kinetics as a function of time in a non-destructive, non-invasive, label-free manner. Fluxomics, a metabolomics based approach providing high-throughput insights, can be considered a gold standard approach, …

Variable Temperature And Moisture Requirements For Germination Within Populations Of Kochia (Bassia Scoparia) In Field Margins, Brian Schutte, Rebecca Creamer

Entomology, Plant Pathology, & Weed Science: Datasets

No abstract provided.

From Fit To At-Risk: Latent Profiles Of Health And Behavior Among First-Year Mexican American College Students, Soyoung Kwon, Shannon Shen, Jieming Chen, Soojin Yoo, Boram Lim, Sukho Lee

Health & Human Performance Faculty Publications

The first year of college is pivotal for establishing lifelong health habits, yet many Mexican American students experience challenges during this transition. Using data from 285 first-year students at three Hispanic-Serving Institutions in Texas, we performed latent profile analysis (LPA) to explore groups of behavioral and physical health indicators. Four profiles were identified: (1) Moderate Risk Behavior—healthy body composition but high intake of alcohol and fast-food; (2) Multidimensional High Risk—poor sleep, high body fat, and high substance use; (3) Health-Optimal Active—active lifestyle, low-risk behaviors, and good sleep quality; and (4) Physically Inactive but Lean —low activity with lean body composition …

Limited Site-Specific Blue Carbon Recovery Following Tropical Seagrass Restoration In Thailand, Ratchanee Kaewsrikhaw, Milica Stankovic, Pere Masqué, Mathew A. Vanderklift, Tipamat Upanoi, Anchana Prathep

Research outputs 2022 to 2026

Seagrass restoration is gaining popularity as a nature-based method for climate change mitigation, owing to its effectiveness in capturing and storing organic carbon (Corg). However, demonstrating blue carbon additionality — defined as a measurable increase in carbon stocks directly attributable to restoration activities — remains challenging. This research assessed sedimentary Corg stocks and carbon accumulation rates in restored tropical seagrass meadows throughout Thailand. Despite successful restoration at multiple sites, sediment analysis showed little Corg accumulation, low Corg and organic matter content, with non-significant differences among restored seagrass areas, patchy natural meadows, and nearby bare sand areas. Limited sediment accumulation was …

Decline In Offspring Quantity But Not Quality From Successive Matings In Male Rainforest Drosophila, With No Evidence For Genetic Divergence In Male Mating Behaviour Along Elevational And Density Gradients, Andrew D. Saxon, Eleanor K. O'Brien, Natalie E. Jones, Jon Bridle

Research outputs 2022 to 2026

Fertilisation success is a major component of male fitness, meaning males should capitalise on all opportunities for mating. However, other sources of variation in fitness mean that males often evolve life histories that limit their ability to mate frequently. We quantified mating latency, mating duration, and offspring production in males of the tropical fly Drosophila birchii when presented with up to 4 females consecutively. Males were sourced from isofemale lines from the extremes of 2 elevational gradients (20–1100 m) that show substantial differences in population density, temperature, and humidity. Total offspring sired increased with number of matings achieved, demonstrating substantial …

Investigating The Impact Of Cyanobacterial Harmful Algal Blooms On Freshwater Bivalves, Destiny Devlin

Theses, Dissertations and Culminating Projects

Harmful algal blooms (HABs) threaten freshwater ecosystems by producing toxins that disrupt aquatic organism functions and pose risks to human health. This study investigated how exposure to toxin-producing cyanobacteria affects the behavior and toxin accumulation of Asian clams (Corbicula fluminea) under controlled laboratory conditions. Asian clams were collected from a freshwater site in New Jersey, maintained in greenhouse bins, and fed either Microcystis novacekii (non-toxin-forming, control N=3) or Microcystis aeruginosa (toxin-forming, experimental N=3) at 100,000 cells/mL for 28 days. Weekly behavioral assays were conducted to track shell opening, burying, clustering, valve closure, foot extension, and time to first opening. Toxin …

Patient Characteristics, Growth Indices, And Treatment Outcomes Among Children With Feeding Difficulties, Amelia Kearney

Theses, Dissertations and Culminating Projects

Pediatric feeding difficulties is an umbrella term that is used to describe children with a variety of problematic feeding behaviors and/or mealtime impairments that can impact age-appropriate food consumption, growth and the caregiver-child relationship. There is a lack of research from nutrition professionals regarding the nutrient intake, diet quality and growth outcomes among patients with pediatric feeding difficulties. Furthermore, changes in nutrient intakes during intensive outpatient treatment have not been formally assessed. PURPOSE: The purpose of Manuscript 1 was to describe the demographic profile, medical history, and baseline mealtime behaviors, usual diet, and diet quality of patients with feeding difficulties …

Artificial Neural Network Based Protection For Dc Bus Using Solid State Dc Breaker, Eswaraiah Giddalur, Askani Jaya Laxmi

ASEAN Journal on Science and Technology for Development

Low voltage Direct Current (LVDC) microgrids have been extensively used as a hopeful technology with high access to distributed energy resources (DERs) and DC loads, due to the absence of multiple conversions. A high amplitude Fault current together with the vulnerability of electronic devices, poses a great challenge to the line protection in LVDC microgrids. Electromechanical switches are slow and take long tripping time to clear the short circuit fault. Power electronic circuit breakers are used to achieve fast fault interruption recent progress in areas like machine learning and natural language processing have affected nearly every assiduity and area of …

Design Of An Economic Order Quantity–Based Dashboard For Vaccine Packaging Inventory Management, Hadi Susanto, Susmitha Canny, Alexandra Elizabeth Callistha, Shakira Dwi Purwandari, Naila Davina Aurelia

ASEAN Journal on Science and Technology for Development

Background: Timely availability of vaccine packaging is critical to pharmaceutical supply chain reliability, as packaging materials play a key role in maintaining cold chain integrity during distribution. Inadequate availability of packaging materials can disrupt vaccine delivery even when finished vaccines are ready for shipment. The case company faces frequent delivery delays, insufficient safety stock, and irregular replenishment of vaccine packaging materials, which have jeopardized the organization’s target of achieving a 90% on-time delivery rate.

Objective: To design and evaluate an Economic Order Quantity (EOQ)–based inventory dashboard for vaccine packaging that standardizes ordering decisions and strengthens stock visibility in pharmaceutical distribution …

High Potential, Uneven Uptake: Off-Grid Renewables In Agriculture Across The Global South, Muhamad Setyawan Bahari, Destia Mardhotillah

ASEAN Journal on Science and Technology for Development

Reliable energy access is widely recognized as essential for agricultural development, yet adoption of off-grid renewable energy technologies (RETs) in the Global South remains uneven despite their high potential. While RETs are increasingly promoted as solutions to food insecurity and energy poverty, evidence on what enables or constrains their uptake across agricultural contexts remains fragmented. This study systematically reviews 18 peer-reviewed articles published between 2013 and 2025 using the PRISMA framework and synthesizes findings through a PESTEL lens. The literature has expanded in recent years, reflecting growing policy attention to the energy–agriculture nexus, but remains concentrated in Asia and heavily …

Efficacy And Safety Of Semaglutide In Adults Without Diabetes Who Are Overweight Or Obese, Rebecca Petty

The PA Department Journal of Medical Science

INTRODUCTION:

Obesity is associated with an increased risk of cardiovascular and metabolic disorders and contributes to the leading cause of death in the US — heart disease. Glucagon-like peptide-1 (GLP-1) receptor agonists (RAs) have recently emerged as a treatment option for obesity. The purpose of this clinical review is to evaluate the efficacy and safety of semaglutide in adults without diabetes who are overweight or obese.

METHODS:

PubMed was searched using a precise search strategy and the key terms “semaglutide,” “weight loss,” and “without diabetes.” Results were filtered and narrowed using specific inclusion and exclusion criteria. Four high-quality studies were …

The Forensic Implications Of Hydrochloric Acid (Hcl) Exposure On Dna Preservation In Human Teeth, Shaelyn Lee Zimmerman

Graduate Student Theses, Dissertations, & Professional Papers

Identity is a human right, and forensic anthropological methods are often aimed at returning identity to decedents. Three main pathways are used for the identification of human remains: fingerprints, dental records, and DNA analysis. Identification efforts may be hindered when perpetrators attempt to obscure the victim’s identity. In cases where corrosive substances, such as hydrochloric acid (HCl) are used, dental comparison and fingerprinting often fail and genetic analysis becomes the best chance of achieving personal identification.

Previous studies have shown teeth are an excellent source of DNA. Large, multi-rooted teeth, such as molars, are often preferred because they contain the …

High Algal Biomass Is Decoupled From Metabolism In The Gallatin River, Cora Mae Steinbach

Graduate Student Theses, Dissertations, & Professional Papers

Assessing eutrophication in rivers is difficult compared to lakes and coastal waters, because most algal biomass occurs on the riverbed and flows interact and co-vary with production (Biggs and Close, 1989; Bernhardt et al., 2018). Riverine eutrophication is typically assessed using algal biomass and water column nutrients (U.S. Environmental Protection Agency, 2000), but biomass is highly variable and labor-intensive to measure, while nutrient concentrations often underestimate enrichment due to rapid biological uptake (Dodds and Smith, 2016). Reach-scale river metabolism can help evaluate long-term functional change in rivers recovering from nutrient enrichment (Arroita et al., 2019; Jankowski et al., 2021; Diamond …

Real-Time Immersive Wildfire Simulation: A Game Engine Approach, Jake Bova

Graduate Student Theses, Dissertations, & Professional Papers

Wildfires are growing in frequency, size, and severity, placing escalating demands on firefighting resources and putting lives, property, and ecosystems at risk. Accurate prediction of fire behavior is critical to suppression planning, evacuation decisions, and firefighter training, yet the operational models that fire managers rely upon face a persistent tradeoff. High-fidelity physics-based models capture fire–atmosphere interactions faithfully but are computationally expensive, often running far slower than real time on CPU hardware, while faster empirical models sacrifice the dynamic coupling between a fire and the wind field it generates. Furthermore, most existing tools produce abstract, two-dimensional outputs that offer limited visual …

Evaluating Multi-Year Transferability Of Single- And Multi-Class Machine Learning For Remote Monitoring Of Beaver-Engineered Landscapes, Harris J. Sloan

Graduate Student Theses, Dissertations, & Professional Papers

Long-term satellite image archives enable ecological monitoring at large scales, but manual extraction of fine-grained features (e.g., beaver dams) remains time-consuming. Machine learning models may automate these tasks, but their temporal transferability for multiannual monitoring is still poorly resolved.

We evaluated the performance of two complementary neural-network frameworks across a 100,000-hectare watershed in Montana USA, using a decade of satellite imagery (2014-2024): (i) a single-class ResNet-50 beaver dam detector, and (ii) a multi-class ResU-Net landcover classifier.

In 2024, the dam detector identified 352 of 404 mapped dams, achieving balanced accuracy = 93.6%, precision = 79.8%, recall = 87.1%, F1 = …

Feral Horses And Native Ungulates: Evaluating The Potential For Competition In Predator–Prey Communities Of Alberta’S Upper Foothills, Birch Gano

Graduate Student Theses, Dissertations, & Professional Papers

Feral herbivores are expanding in range and numbers globally, yet their community-level effects in ecosystems are poorly resolved. We evaluated whether feral horses reshape predator–prey–vegetation dynamics in Alberta’s Upper Foothills, Canada, through two pathways; i) potential exploitative competition for forage and ii) apparent competition via shared predators. We combined fecal DNA metabarcoding with remote wildlife cameras to quantify diets, spatiotemporal co-occurrence, and the role of horses in carnivore diet. We analyzed 241 ungulate scats (feral horses, elk, bighorn sheep, cattle, moose, and deer), 96 combined camera-years at 23 sites, and 190 carnivore scats (wolves, cougars, coyotes, bears) from 2023–2025. The …

An Exploratory Analysis Of The Role Of Sex In Load Carriage, Rachel E. Perez, Dustin R. Slivka, Brent C. Ruby

Graduate Student Theses, Dissertations, & Professional Papers

Axially loaded weight may impose a metabolic demand equivalent to that of fat mass (FM) during load carriage. Males (M) typically have a lower body fat percentage than females (F), resulting in metabolic demand differences during load carriage that may be mitigated by accounting for FM in pack loads. PURPOSE: To determine whether normalizing pack load to FM equalizes metabolic cost across sexes during load carriage. METHODS: Twenty-eight participants (14M, 23 ± 5 y, 1.81 ± 0.07 m, 78.7 ± 10.0 kg, 12.7 ± 5.4% body fat, VO₂peak 4.18 ± 0.54 L·min^-1; 14F, 22 ± 4 …

Velocity Based Training In Athletic Development, Ross Martin Sangalang

Graduate Student Theses, Dissertations, & Professional Papers

The foundation of high-level sport performance is the ability to produce and express force rapidly across the task-specific temporal demands of sport. Traditional percentage-based prescription methods have long been used to develop hypertrophy, maximal strength, and power; however, fixed %1RM prescriptions fail to account for daily undulations in athlete readiness, accumulated fatigue, and changes in neuromuscular capacity. Velocity based training (VBT) offers a practical framework to regulate training through measurement of concentric velocity, allowing coaches to more accurately prescribe loads, stringently monitor repetition quality, and precisely regulate fatigue. This review discusses the neuromuscular qualities underpinning success in athletic endeavors, limitations …

Aquatic Habitat Use By Western Toads And American Bullfrogs In California’S Central Valley: Effects Of Local Habitat Characteristics And Landscape Composition, Kaitlyn Breana Hernandez

Cal Poly Humboldt theses and projects

Drastic losses of historic wetland habitat in the California Central Valley have caused widespread population declines and extirpations of aquatic breeding amphibians. Efforts to restore wetland habitat have included private land, which represents 70% of land tenure in the Central Valley. Management of these restored wetlands is focused on waterfowl with the assumption that they will provide habitat for native herpetofauna. This study used combined surveys to test the assumption that restored wetlands on private land provide habitat for native amphibians with the western toad (Anaxyrus boreas) as a case study. The objectives were to use environmental DNA …

Coho Salmon (Oncorhynchus Kisutch) Response To Habitat Restoration Through Space And Time: Monitoring Growth, Survival, And Movement In A Restored Habitat Network, Carter Perez Adamson

Cal Poly Humboldt theses and projects

Despite the decline of coho salmon (Oncorhynchus kisutch), Prairie Creek, a tributary of Redwood Creek in northern California, remains a coho salmon stronghold. The restoration of juvenile coho rearing habitat was identified as a recovery objective in this watershed by the National Marine Fisheries Service. Among the restoration projects addressing this objective are an ongoing project on Prairie Creek and its tributary Skunk Cabbage Creek, and a prior effort on Strawberry Creek (a tributary of Redwood Creek’s estuary). Standard monitoring methods for assessing project success have limitations and may be improved by measuring salmon use of restored habitats …

Relational Approaches To Fire Resilience: Designing A Living Shaded Fuel Break With Indigenous Knowledge Systems, Natalee Nicole Lopes

Cal Poly Humboldt theses and projects

Escalating wildfire severity across California reflects not only changing climatic conditions but also the cumulative impacts of colonial land management systems that have disrupted Indigenous fire stewardship and altered forest structure and function. This project examines how wildfire mitigation infrastructure, specifically linear fuel treatments, such as fuel breaks, can be reimagined through Indigenous relational frameworks of care-based land stewardship. Grounded in Happy Camp (Athithúfvuunupma), California, within the ancestral homelands of the Karuk Tribe along the mid-Klamath River, this research is carried out in collaboration with Karuk knowledge holders, centering Indigenous knowledge systems and priorities.

Using a mixed-methods approach that integrates …

Effects Of Conifer Encroachment On Oregon White Oak Crown Structure And Nonvascular Epiphyte Communities, Courtney Jonell Copper

Cal Poly Humboldt theses and projects

Oregon white oak (Quercus garryana, QUGA) is an ecologically and culturally important broadleaf tree species native to northern California and the Pacific Northwest. Fire suppression and subsequent encroachment by Douglas-fir (Pseudotsuga menziesii, PSME) and other conifers have made QUGA woodlands among the most threatened habitat types in the region. This study examines the influence of conifer encroachment on QUGA crown structure and nonvascular epiphyte (NVE) communities using ground- and crown-based sampling techniques.

Twenty-four trees were sampled across four sites in northern California along a gradient of conifer encroachment that was quantified as PSME basal area (BA). A …