Life Sciences Commons^™

Long-Term Analysis Of Pm2.5 Elemental Composition And Source Contributions In Coastal Urban Environments Of Corpus Christi And Houston In Texas, Sai Deepak Pinakana, Jeremy A. Sarnat, Amit U. Raysoni

School of Earth, Environmental, & Marine Sciences Faculty Publications

Long-term assessments of fine particulate matter play a key role in identifying persistent and emerging emission contributors. Coastal urban areas are highly susceptible to transboundary dust and wildfire events in addition to local pollution sources. Multi-decadal assessments in these regions using chemical speciation data could offer insights into major pollutant sources and their trends. This study utilizes nearly two decades of PM2.5 elemental composition data at two major coastal cities in Texas: Houston and Corpus Christi. Fourteen trace elements were analyzed to characterize the seasonal variability and long-term source evolution using a combination of Spearman’s correlation analysis, principal component analysis, …

Evaluating The Transformation Of Land Cover, Land Surface Temperature, And Urban Heat Island In Sylhet Division Through Geospatial Analysis, Md Fazle Rabbi Joy, Md Abdur Rahim, Md Mahfuzar Rahman, Sumiaya Amin Preota, Mohammed Mahathee Hossain

School of Earth, Environmental, & Marine Sciences Faculty Publications

Rapid and unplanned urbanization has significantly transformed land use/land cover (LULC), contributing to increased land surface temperature (LST) and the emergence of urban heat islands (UHIs), especially in ecologically fragile regions. This study focuses on the Sylhet Division of Bangladesh, assessing LULC changes, LST dynamics, and UHI expansion from 1994 to 2024 using Landsat satellite imagery, normalized difference vegetation index (NDVI), normalized difference water index (NDWI) indices, and field-based LST validation. Unsupervised classification reveals a 191.75% increase in settlement areas and a 25.65% loss in forest cover. Correspondingly, the highest LST zones (> 30 °C) were absent in 1994 but …

Managing Collaboration Under Conservation Crisis: Trust, Risk, And Control In The Gulf Of Maine Fishery Management Network, Evelyn Roozee, Owen Temby, Dongkyu Kim, Antonia Sohns, Anthony Rocha Lima, Jasper R. De Vries, Gordon M. Hickey

School of Earth, Environmental, & Marine Sciences Faculty Publications

Transboundary fishery management and the intertwined conservation of critically endangered species represent significant governance challenges that require ongoing inter-organizational communication, collaboration, and collective action to achieve shared objectives. Previous research suggests that inter-organizational collaborative performance depends heavily on different dimensions of trust and complementary control mechanisms to mitigate the perceived risks of collaborating and enable the reciprocal sharing of resources and the coordination of activities. However, it is unclear how proposed relationships between trust, risk, and control are shaped by disruptions to established transboundary management networks. This study presents the results of survey research conducted in the Gulf of Maine …

Release Of Bound Steroid From The Androgen And Estrogen Receptors Is Induced By Ddt And Its Analogs, Matthew D. Rosales, Tahyra Soto, Jacqueline I. Goodship, Ahyssa R. Cruz, Isaac A. Rodriguez, Ventura Cuba Flores, Amanda Chavez, Monica P. Solis, Esmeralda Lopez, Frank B. Dean, Evangelia Kotsikorou

School of Integrative Biological & Chemical Sciences Faculty Publications

The pesticide p,p'-DDT (DDT) and its analogs (p,p'-DDD, o,p'-DDD, and p,p'-DDE) inhibit the binding of dihydrotestosterone (DHT) to the androgen receptor (AR) and estradiol (E2) to the estrogen receptor (ERα) ligand-binding domains (LBDs), as previously reported. In this study, we introduce assays to measure the release of receptor-bound steroids. These compounds induced the release of DHT from the AR LBD and E2 from the ERα LBD. These findings suggest that DDT and its analogs may interact with a surface site on the LBD, thereby allosterically disrupting steroid binding. One potential site is binding function 3 (BF3). To explore this possibility, …

First Evaluation Of Contrast-Enhanced Micro-Xct As A Tool For Organismal And Reproductive Trait Observations In Corals Based On Scans Of Thesea Nivea Deichmann, 1936, Erin E. Easton

School of Earth, Environmental, & Marine Sciences Faculty Publications

Micro-X-ray computed tomography (micro-XCT) with contrast enhancement is considered a non-destructive tool that is increasingly being applied to explore the internal and external structures of vertebrates and invertebrates. Although micro-XCT has been applied to corals to study skeletal features, contrast enhancement has not been applied to evaluate the utility for visualization of soft tissue structures in corals. This study is the first to evaluate the utility of contrast enhancement to visualize internal and external features, including soft tissue features, of octocorals. Contrast staining of a Thesea nivea specimen with 2.5% Lugol's iodine permitted visualization of soft tissues with sufficient density …

Blue Carbon Ecosystems As Climate Solutions: Sequestration Across Coastal And Marine Environments, Allison K. White, Richard J. Kline, Md. Saydur Rahman

School of Earth, Environmental, & Marine Sciences Faculty Publications

Blue carbon ecosystems (BCEs) such as mangroves, salt marshes, and seagrasses, sequester significant amounts of CO2 from the atmosphere. These ecosystems capture and store carbon in biomass and sediments over long periods. Other marine ecosystems, including the open ocean, kelp forests, bivalve reefs, and coral reefs, have been excluded from the BCEs, but they have the potential to serve as crucial blue carbon sinks or to support adjacent BCEs. Climate change, however, poses severe threats to these ecosystems. Rising sea levels, increasing temperatures, and ocean acidification can lead to habitat loss, reduced biodiversity, and impaired carbon sequestration capacity. Consequently, anthropogenic …

Silverleaf Nightshade (Solanum Elaeagnifolium) Undergoes Guild-Specific Transcriptomic Reprogramming Against Chewing Versus Piercing Sucking Herbivory, Arunsaikumar Karrem, Matthew Terry, Jagdish Jaba, Rupesh R. Kariyat

School of Integrative Biological & Chemical Sciences Faculty Publications

Solanum elaeagnifolium (silverleaf nightshade, SLN) is a globally invasive perennial weed with reproductive plasticity and complex defence systems that significantly impact crop yields by invading fields of staple, commercial and ornamental crops. Despite being a host to multiple insect herbivores, the molecular programming enabling its rapid adaptation to defend against diverse feeding guilds remains poorly resolved. Here, we report a comprehensive de novo transcriptomic assembly and comparative analysis of S. elaeagnifolium challenged by two distinct herbivores: the piercing-sucking generalist cowpea aphid, Aphis craccivora and the chewing specialist tobacco hornworm, Manduca sexta. Differential gene expression analysis revealed a massive difference …

Multi-Omic Characterization Of The Hispanic/Latino Blood Lipidome Reveals An Additional Locus And Attenuated Genetic Prediction, Wanying Zhu, Hung-Hsin Chen, Heather M. Highland, Corey Giles, Peter J. Meikle, Joanne Curran, Joseph B. Mccormick, Susan P. Fisher-Hoch, Kari E. North

Human Genetics Publications

While lipids have been extensively investigated, genetic regulation of the circulating lipidome in diverse populations remains poorly understood. We conducted a lipidome-wide genome-wide association study (GWAS) of 830 lipid species in 2,287 Hispanic/Latino participants and performed predictive modeling across omics layers. We identified 7,593 genome-wide significant SNPs mapping to 208 genes. Conditional analysis disentangled the long-range linkage disequilibrium artifacts from the pleiotropic FADS1/2/3 cluster. Separately, we discovered an association at the GPLD1 locus for a circulating ceramide. Colocalization revealed shared genetic architecture with conventional lipids alongside distinct, species-specific pathways. Incorporating Native/Indigenous American expression quantitative trait loci …

White Shark Occurrence In Flower Garden Banks National Marine Sanctuary Revealed From Acoustic Telemetry In An Offshore Mpa, Michael A. Dance, Jay R. Rooker, R. J. David Wells, Megan V. Winton, Landes L. Randall, Marissa F. Nuttall, Brondum M. Krebs, Creed C. Branham, Brett B. Sweezey, Richard J. Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

The outer continental shelf of the Gulf of Mexico (Gulf) is characterized by unique bathymetric features that provide critical habitat for marine fauna. Here, we demonstrate the utility of large-scale acoustic telemetry for monitoring an oceanic marine protected area (MPA) and document the first known occurrences of white sharks (Carcharodon carcharias) within Flower Garden Banks National Marine Sanctuary (FGBNMS). White sharks were tagged with acoustic transmitters in the western North Atlantic Ocean off the east coast of the United States and Canada. Nine white sharks were detected along the outer shelf ecosystem associated with FGBNMS over a three-year …

Automated And Quantitative Characterization Of Benthic Habitat And Associated Biological Communities Of An Unknown Southeast Pacific Seamount, Yakufu Niyazi, Denise J. B. Swanborn, Jan M. Tapia-Guerra, Javier Sellanes, Erin E. Easton, Germán Zapata-Hernández, Heather A. Stewart, Alan J. Jamieson

School of Earth, Environmental, & Marine Sciences Faculty Publications

Seamounts are prominent seafloor features that strongly influence geological processes, ocean circulation, and benthic biodiversity. Despite their importance, most seamounts remain unmapped and poorly characterized, particularly in the southeast Pacific Ocean, a region recognized for high marine endemism and ecological isolation. In this study, we present a quantitative habitat characterization of a previously undocumented seamount, informally named Solito Seamount, located between the Nazca–Desventuradas Marine Park and the Juan Fernández Archipelago, within Chile’s Exclusive Economic Zone. The seamount is a conical volcanic edifice approximately 37 km wide, rising >3,500 m above the surrounding abyssal plain. High-resolution multibeam bathymetry and backscatter intensity …

A New Bubblegum Coral From The Nazca Ridge Reveals Chitin As The Structural Scaffold Of Skeleton-Less Paragorgia Colonies, Juan Armando Sánchez, Erin E. Easton, Nayeli Elizavet Garcia, Yony Román-Ochoa, Julia Kaled Cáceres, Javier Sellanes

School of Earth, Environmental, & Marine Sciences Faculty Publications

Bubblegum corals (Paragorgia; Corallidae) form among the largest branching colonies in deep-sea environments despite lacking an axial skeleton. How these octocorals maintain structural cohesion using only sub-millimeter sclerites has remained unexplained. Here we describe Paragorgia quitinosa Sánchez & Easton n. sp., collected at 670 m depth on the Nazca Ridge (southeastern Pacific) during the Schmidt Ocean Institute RV Falkor (too) expedition FKt240708, and report the first evidence of visible chitin in octocoral tissues. The new species is diagnosed by autozoids and siphonozoids retracted on prominent, rounded mounds, large 8-derived radiate capstan sclerites (mean 0.095 mm), and canal walls …

Stress Conditioning Modulates Phenolic Antimicrobial Responses In Salmonella Typhimurium And Listeria Innocua, Titus Puorizaa, Veerachandra K. Yemmireddy

School of Integrative Biological & Chemical Sciences Faculty Publications

Environmental stress adaptation can alter bacterial responses to antimicrobial interventions used in food processing and preservation. This study evaluated how prior acid, osmotic, and cold conditioning affected the susceptibility and growth behavior of Salmonella enterica serovar Typhimurium and Listeria innocua during exposure to carvacrol and thymol. Cells were conditioned in acidic tryptic soy broth (TSB, pH 5.5), osmotic (TSB supplemented with 2.5% NaCl), or low temperature (4°C) before antimicrobial treatment. Susceptibility was assessed using modified broth microdilution and minimum bactericidal concentration assays, while recovery was evaluated using 24 h optical-density growth curves and primary growth modeling. Stress conditioning produced modest, …

Variability In Nutrient And Carbon Cycling Of Constructed Marshes, Alyssa Leclaire, Jenny Davis, Molly Bost, David De La Garza

School of Earth, Environmental, & Marine Sciences Faculty Publications

Salt marshes provide valuable ecosystem services, including filtering nutrients and trapping sediments from the water column, but are increasingly threatened by sea-level rise and coastal development. Constructed marshes offer a potential pathway to offsetting marsh loss, but the extent to which they can replace the ecosystem services provided by mature natural marshes is not well understood. Using a chronosequence of constructed marshes (1, 21, and 44 years old) and a natural reference marsh (>100y old) in Beaufort, NC, we assessed the development of plant communities, sediment characteristics, and nutrient and carbon cycling over time. We compared aboveground biomass, surface …

Genomic Investigation Of Population Structure In A Secretive, Semi‐Fossorial Snake (Colubridae: Tropidoclonion Lineatum) Across The Great Plains, Taylor Probst, Cameron D. Siler, Drew R. Davis

School of Integrative Biological & Chemical Sciences Faculty Publications

With advances in genomic technologies, it has become increasingly feasible to generate large numbers of loci to address population genetic and phylogeographic questions. Nevertheless, many widespread and relatively abundant species remain unsampled using molecular approaches. The lined snake ( Tropidoclonion lineatum ), a semi‐fossorial snake distributed across the Great Plains, is one such example. Despite the historical recognition of multiple subspecies based on noted variation in morphological characters, no formal molecular investigation of population structure has been conducted to date due to a paucity of vouchered genetic samples. Here, we present the first genomic assessment of range‐wide population structure in …

Integration Of Lipidomic And Polygenic Risk Scores Within Contemporary Clinical Cardiovascular Risk Assessment Pathways: A Multi-Cohort Development And Validation Study, Aleksandar Dakic, Jingqin Wu, Tingting Wang, Thomas G. Meikle, Kevin Huynh, Changyu Yi, Habtamu B. Beyene, Agus Salim, Michelle Cinel, Nat Mellett, John Blangero

Human Genetics Publications

Background: Guideline-recommended clinical risk scores such as AusCVDRisk underestimate cardiovascular disease (CVD) risk in a substantial proportion of individuals who later experience events, with up to 65% initially classified as low or intermediate risk. This limitation is most consequential in the intermediate-risk group, where treatment decisions are uncertain and additional risk refinement could alter management. Circulating lipid species and inherited genetic variation capture complementary molecular aspects of atherosclerotic risk that are not fully reflected by conventional clinical variables, but are not routinely incorporated into primary-care risk assessment. We investigated whether selective integration of lipidomic and genomic risk signals into AusCVDRisk …

Transcriptomic Architecture Of Metabolic Dysfunction-Associated Steatotic Liver Disease (Masld) Risk In Mexican Americans, Satish Kumar, Miriam Aceves, Lorena Guerra, Jose C. Granados, Earl Novilla, Felicia Juarez, Tolulope Oluwadairo, Ana C. Leandro, Marcelo Leandro, Juan M. Peralta, Sarah Williams-Blangero, John Blangero, Joanne E. Curran

Human Genetics Publications

Hispanics of Mexican American descent in South Texas show a very high prevalence of MASLD, with some studies reporting rates as high as 50% in adults. However, assessment of genetic risk factors underlying this prevalence is complicated by a high co-occurrence of other metabolic disorders and variable endogenous and exogenous environmental risk factors. To map the transcriptomic architecture of MASLD hepatic steatosis risk, we conducted an epidemiological-scale investigation using human induced pluripotent stem cell (iPSC)-derived hepatocyte cultures from 193 participants in our longitudinal South Texas Family Study (STFS). iPSC-based models offer greater power to map genetic risk factors by experimentally …

Land-Use Transitions And Carbon Emissions Of Aquaculture Expansion In The Brazilian Amazon, Felipe S. Pacheco, Sebastian A. Heilpern, Rafael M. Almeida, Suresh A. Sethi, Marcela Miranda, Nicholas Ray, Laura Greenstreet, Joshua Fan, Brendan H. Rappazzo, Marcelo Gomes Da Silva

School of Earth, Environmental, & Marine Sciences Faculty Publications

Accounting for land-use change underlying food sector expansion is critical for conserving ecosystem integrity. This challenge is particularly acute in the Amazon, where the conversion of forests for food production is pronounced and has broad implications for global biodiversity and the cycling of water and carbon. Here, we analyze land-use transitions associated with aquaculture development in the Brazilian Amazon. We found that a 450-fold increase in aquaculture pond area from 1985 to 2022 occurred primarily on pasturelands (87%) but also included wetland conversion (4%) and deforestation (5%). Notably, continued growth can be sustained within already altered landscapes: In Rondônia, the …

Phenotypic And Biochemical Responses Of High-Yield Tomato Varieties To Salinity And Drought Stress, Shahida Ferdousee, Myung Hwangbo, Md Sakil Arman, Muhammad Abul Kalam Azad, Ajit Ghosh, Jongsun Kim

School of Earth, Environmental, & Marine Sciences Faculty Publications

Abiotic stresses can influence plant growth and productivity by causing physiological, biochemical, molecular, and morphological changes. Salinity and drought are increasing in frequency and intensity because of climate change. Therefore, this study assessed four high-yield tomato cultivars under 150 mM NaCl and 260 mM mannitol treatments to characterize physiological (i.e., chlorophyll level, root/shoot length, and relative water content) and biochemical responses (i.e., GLY I/II and DLDH enzyme activities, proline, and hydrogen peroxide). Results indicated that the four BARI tomato varieties showed genotype- and treatment-specific physiological and biochemical responses rather than a single uniform tolerance pattern. BARI tomato 2 maintained relatively …

Dry After-Ripening Increases Germination Of Critically Imperilled Physaria Thamnophila (Zapata Bladderpod), Christopher A. Gabler, Jerald T. Garrett

School of Earth, Environmental, & Marine Sciences Faculty Publications

Effective endangered plant conservation and recovery require empirical knowledge of seed dormancy release and responses to post-collection handling, yet such information is lacking for many rare taxa. Physaria thamnophila (Zapata bladderpod; Brassicaceae), a critically imperilled (G1) species endemic to southern Texas, USA, is poorly studied, and basic questions regarding seed storage and germination remain unresolved. We evaluated the effects of short-term cool-storage duration (14–180 d), storage temperature (refrigeration vs. freezing), dry after-ripening and maternal plant identity on germination probability and timing in P. thamnophila. Dry after-ripening and increased cool-storage duration consistently increased germination and shortened germination time, whereas storage temperature …

Influence Of Transboundary Wildfire Smoke On Fine Particulate Matter Concentrations At South Texas Border Schools, Sai Deepak Pinakana, Kabir Bahadur Shah, Owen Temby, Dawid K. Wladyka, Juan L. Gonzalez, Md Saydur Rahman, Katarzyna Sepielak, Amit U. Raysoni

School of Earth, Environmental, & Marine Sciences Faculty Publications

Exposure to air pollutants in indoor and outdoor school environments poses significant health risks to children due to their heightened vulnerability. Increasing wildfire frequency has intensified transboundary smoke transport, with border communities among the first to experience associated air quality impacts. While the impacts of wildfires on air quality are increasingly recognized through satellite observations and modeling, ground-based observations remain scarce in under-monitored regions. Low-cost air sensors were deployed across schools in the Roma and Rio Grande City areas of Starr County, along the U.S.–Mexico border, for 146-days from November 2023 to April 2024. The raw sensor measurements were corrected …

Engagement Of Understudied Populations As Community Change: The South Texas Adrc Model, Gladys E. Maestre, Neela K. Patel, Rosa V. Pirela, Robin C. Hilsabeck, Kendra Stine, Neyra García, Roberto Reyes, Omar Oropeza, Cristian Maestre, Jesus D. Melgarejo, Sarah Williams-Blangero, Ney Alliey Rodriguez, Sylvia A. Robles

School of Medicine Publications

Many populations experiencing the highest burdens of Alzheimer's disease and related dementias remain understudied, in part because traditional recruitment and retention models are insufficient to support sustained engagement. The Outreach, Recruitment, and Engagement Core (OREC) of the South Texas Alzheimer's Disease Research Center reconceptualized participant recruitment as a long-term system change in a Hispanic-majority, urban–rural region. OREC institutionalizes shared power through community advisory governance, aligns research protocols with local lived realities (through patient navigators, community health workers/promotores, and decentralized access points), and employs a data-driven feedback loop for continuous improvement. In 1 year, 46 outreach events touched 10,134 individuals (71% …

Why Technical Readiness Is Not Enough: Institutional Barriers To Full Harvest Strategy Adoption In The International Pacific Halibut Commission, Evelyn Roozee, Owen Temby, Gordon M. Hickey

School of Earth, Environmental, & Marine Sciences Faculty Publications

Harvest strategies are increasingly promoted as a mechanism to reduce political discretion and align fisheries management with pre-agreed scientific objectives. While substantial progress has been made in tuna regional fisheries management organizations (RFMOs), non-tuna RFMOs have lagged behind. Existing research has focused primarily on technical modeling challenges, with comparatively limited attention to the governance dynamics shaping adoption. Using the International Pacific Halibut Commission (IPHC) as an instrumental case study, we examine the progress and delays in the development of a harvest strategy policy (HSP) through semi-structured interviews and participant observation. We find that the IPHC successfully addressed commonly cited barriers, …

Membrane Progestin Receptors Α And Β (Paqr7 And 8) Are Necessary For Oogenesis In Zebrafish, Md. Almamun Farid, Md. Razain Tanvir, Takumi Mouri, Eisei Tsutsumi, Md. Sohanur Rahman Sohan, Md. Ekramul Hasan, Md Saydur Rahman, Chihiro Yamamoto, Akiteru Maeno, Toshinobu Tokumoto

School of Integrative Biological & Chemical Sciences Faculty Publications

Paqr7 and paqr8 are genes encoding membrane progestin receptor αand β (mPRα and mPRβ, respectively), which are currently classified as members of the progestin and adipoQ receptor (PAQR) family. For mPRα, the first identified mPR gene, there are two paralogs in zebrafish, paqr7a and paqr7b. In order to elucidate the physiological functions of the mPR subtypes, we created gene knockout (KO) fish by editing seven paqr genes in zebrafish and analyzing their phenotypes. The null-mutant strains of paqr7a, paqr7b, and paqr8 presented no significant abnormalities in reproductive functions. Thus, we generated a triple-gene knockout (TKO) strain of …

Molecular Refinement Of The Taxonomy Of Pyrgulopsis Springsnails In Western North America, Michael K. Young, Kristine L. Pilgrim, Eric S. Miskow, Chante L. Lundskog, Kathryn E. Perez, Michael K. Schwartz

School of Integrative Biological & Chemical Sciences Faculty Publications

Springsnails in the genus Pyrgulopsis in western North America have long been a dilemma for taxonomists. Defining species boundaries has been complicated by the presence of undiscovered or cryptic taxa, range over- or underestimation, species complexes representing an unknown number of species, and named species synonymous with other taxa. To address these issues, we conducted an array of molecular species delimitation analyses using sequences from up to 2 mitochondrial and 2 nuclear genes from over 5000 specimens representing 140 of the 151 currently recognized taxa. These analyses reaffirmed most species hypotheses, favored synonymy for some taxa and redrawing of species …

Shared And Distinct Alterations In Brain Structure Of Youth With Internalizing Or Externalizing Disorders: Findings From The Enigma Antisocial Behavior, Adhd, Major Depressive Disorder, And Anxiety Working Groups, Sophie Townend, Marlene Staginnus, Yidian Gao, Nina Alexander, Volker Arolt, Tobias Banaschewski, Katja Beesdo-Baum, Mark A. Bellgrove, Vivek Benegal, Anderson M. Winkler

Human Genetics Publications

Background: Externalizing and internalizing disorders are common in youth but are often studied separately, preventing researchers from identifying shared (i.e., transdiagnostic) alterations in brain structure. Using data from the ENIGMA (Enhancing NeuroImaging Genetics through Meta-Analysis) Consortium, we conducted a mega-analysis to identify shared and distinct cortical and subcortical brain alterations across internalizing (anxiety disorders and depression) and externalizing (attention-deficit/hyperactivity disorder [ADHD] and conduct disorder [CD]) disorders in youth.

Methods: 3D T1-weighted magnetic resonance imaging data from youths (age range 4-21 years) with anxiety disorders (n = 1044), depression (n = 504), ADHD (n = 1317), and CD (n = 1172) …

Associations Of Polygenic Risk Scores For Type 2 Diabetes With Metabolic Measures In Pacific Islanders From Guam And Saipan, Maria J. Ramirez-Luzuriaga, Saied Safabakhsh, Rasol Salehi, Sayuko Kobes, Tanisha F. Aflague, Jenny Duenas Sarmiento, Joanne Curran, Robert G. Nelson, Jeffrey M. Curtis, Carol D. Moffett

Human Genetics Publications

Several polygenic risk scores (PRSs) for type 2 diabetes (T2D) have been derived from genome-wide association studies (GWASs), but Pacific populations have generally not been represented in these GWASs. The aim of this study was to examine the association of PRS for T2D with diabetes and clinical measures in Pacific Islander populations from Guam and Saipan. We analyzed seven constructions of PRSs in 1990 participants in a GWAS from a community-based cross-sectional study of diabetes. Associations of T2D PRS with diabetes, maximum body mass index (BMI), fasting glucose, and HbA1c were examined with adjustment for age, sex, and the first …

Environmental Dna For Endangered Freshwater Mussel Monitoring: A Review On Global Synthesis Of Edna Methods, Challenges, And Innovative Strategies, Mizanur Rahman, Md. Saydur Rahman, Richard J. Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

Freshwater mussels (family Unionidae) are among the most endangered aquatic species worldwide, making effective monitoring vital for their conservation. Traditional surveys are laborious, time-consuming, and often miss rare or low-density populations. Environmental DNA (eDNA) is a highly sensitive, non-invasive approach for freshwater mussel detection and monitoring; however, uncertainties in ecological interpretation continue to limit its broader application in freshwater biodiversity monitoring. We conducted a systematic review of 49 peer-reviewed studies, identified through an extensive literature search, to assess temporal research trends, methodological advancements, ecological contexts, and regulatory readiness of freshwater mussel eDNA monitoring. Findings show that freshwater mussel eDNA research …

Using A Cell Flux Model To Investigate Phytoplankton Growth And Macromolecular Allocation Under Iron Limitation, Margaret Bernish, Meng Gao, Jongsun Kim, Benoit Pasquier

School of Earth, Environmental, & Marine Sciences Faculty Publications

Global biogeochemical models are powerful tools used to interpret observations and empirical data, create hypotheses, and make predictions. Many of these models, however, represent marine microbes as static stoichiometric reactions that convert nutrients into biomass. To better constrain the biological processes that control nutrient cycling in the global ocean, we extend the Cell Flux Model of Phytoplankton to explore the impact of dissolved iron concentration on the allocation of macromolecules and elemental ratios within phytoplankton cells. This model is supported by data obtained from a range of incubation experiments conducted with phytoplankton of varying species and size categories. Model output …

Multi-Sensor Tracking Reveals The Extent Of Nocturnal Migration In Landbirds, Paul Dufour, Raphaël Nussbaumer, Paul Doniol-Valcroze, Yann Rime, Peter Adamík, Susanne Åkesson, Raphaël Arlettaz, Arnaud G. Barras, Nyambayar Batbayar, Andrea Contina

School of Integrative Biological & Chemical Sciences Faculty Publications

Most bird species are diurnal but drastically change their diel cycle of activity to migrate at night. Nocturnal migration has been documented using different methods (e.g., experiments, radar and radio tracking, and acoustic monitoring), but accurately quantifying the proportion of nocturnal versus diurnal flight at the individual and species levels, and understanding how this behavior evolved across the avian tree, has remained methodologically challenging.1,2,3 Such uncertainty is not only of theoretical importance but also limits our ability to mitigate conservation threats, particularly from light pollution and building collisions.4,5,6 With multi-sensor …

Longitudinal Patterns In Stygobiont Distribution In The Hyporheic Zone Of The Karst Spring-Fed San Marcos River, Texas, Usa, Kenneth Sparks, Benjamin F. Schwartz, Safra Altman, Kathryn E. Perez, Zoey B. Chanin, Caroline Mierzejewski, Benjamin T. Hutchins

School of Integrative Biological & Chemical Sciences Faculty Publications

Groundwater-obligate taxa (stygobionts) exhibit variable degrees of habitat specialization, ranging from those restricted to single micro-habitats to generalists occurring in a broad range of habitat types. The karstic Edwards Aquifer is the most biodiverse and well-studied groundwater habitat in the continental United States, but some Edwards Aquifer-associated species also occupy the hyporheic zone of rivers downstream from karst. The goals of this research were to 1) assess the potential of the off-karst hyporheic zone as habitat for ‘karst’ species and 2) to determine how stygobiont richness, diversity, and abundance related to distance from karst in the hyporheic zone of a …