Life Sciences Commons^™

Changes In Seasonal Use Of The Central Platte River Valley, Nebraska, By Sandhill Cranes, Bethany L. Ostrom

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

Recent environmental change has altered migration timing and winter distribution of many bird species, including Sandhill Cranes. Historically, the Central Platte River Valley in Nebraska functioned primarily as a spring staging area for the midcontinent population, with limited fall use and rare overwintering events. I examined records of Sandhill Crane occurrences during October to January in the Central Platte River Valley from 2015-2026 using incidental observations and aerial surveys starting in 2024. Overwintering Sandhill Cranes were documented in 7 of 11 Dec/Jan, with unprecedented increases observed since 2023, peaking with approximately 42,000 Sandhill Cranes in January of 2026, the largest …

Historical Chaos Among Tetrabothriideans (Eucestoda) Of Odontocetes (Artiodactyla)—Revising Generic Taxonomy And Species Diversity For Cestodes Among Oceanic Dolphins, Eric P. Hoberg, Kaylen Marie Soudachanh, Robert L. Rausch

MANTER: Journal of Parasite Biodiversity

Explorations over the past 150 years that have defined the diversity and structure of the tetrabothriidean cestode fauna among Odontocete cetaceans (Artiodactyla) are summarized and reviewed. Persistent errors in interpretation of comparative morphological characters, inconsistent taxonomic decisions, and an understanding of generic-level and species diversity are addressed. We outline a revision of the Tetrabothriidea, which now encompasses 8 genera. Prosthecocotyle is resurrected from synonymy with Tetrabothrius, and Cetaceobothridius n. gen is proposed. A clear basis is outlined for differentiation of generic and species diversity among Cetaceobothridius, Priapocephalus, Prosthecocotyle, Strobilocephalus, Tetrabothrius, and Trigonocotyle that constitute the tetrabothriidean fauna of odontocetes; species …

Genomic Analysis Reveals New Subspecies Of Cercyonis Scudder, 1875 (Nymphalidae: Satyrinae: Satyrini), Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Todd L. Stout, Michael S. Fisher, Robb Hannawacker, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Genomic analysis of Cercyonis (Cercyonis) Scudder, 1875 (Nymphalidae Rafinesque, 1815) partitions the subgenus into three species groups and reveals five new subspecies from the USA (type localities in parentheses): Cercyonis (Cercyonis) pegala koosharem Stout and Grishin, ssp. n. (Utah, Sevier Co.), Cercyonis (Cercyonis) pegala lasala Grishin, M. Fisher, and Hannawacker ssp. n. (Utah, Grand Co.), Cercyonis (Cercyonis) pegala hortoni Grishin, ssp. n. (Arizona, Gila Co.), Cercyonis (Cercyonis) meadii maculana Grishin, ssp. n. (Colorado, Montezuma Co.), and Cercyonis (Cercyonis) meadii rimana Grishin, ssp. n. (Arizona, Yavapai Co.). A neotype is designated for Satyrus boopis Behr, 1864 (USA, California, Contra Costa Co.). …

Comparing Non-Invasive Survey Methods For Southern Flying Squirrels (Glaucomys Volans) At The Western Edge Of Their Range, Jay E. Winfield, Jeremy A. White

Transactions of the Nebraska Academy of Sciences and Affiliated Societies

The southern flying squirrel (Glaucomys volans) is a threatened species in Nebraska that occurs along the Missouri River in the southeastern corner of the state. Recently, a population was discovered in the city of Lincoln, but it is unknown whether this population represents a natural range expansion from the Missouri River population or whether it is isolated and results from a human-assisted movement. A survey of southern flying squirrels in Nebraska is needed, but surveys of this elusive species are challenging. This study investigated and compared two noninvasive survey techniques for rapid detection of flying squirrels: acoustic detectors …

Odyssey To The Extraordinary: Living Our Land Grant Mission And Beyond, Jeffrey P. Gold, Katherine S. Ankerson, Tiffany Heng-Moss

Institute of Agriculture and Natural Resources: Institute Publications

Presents a strategy intended to guide future directions for the University of Nebraska-Lincoln's (UNL) Institute of Agriculture and Natural Resources (IANR) including issues related to governance, funding, organizational structure, and strategic alignment within UNL and the University of Nebraska system.

Evaluating The Motivations Of Participants In Online Equine Extension Courses, Sarah Vos

Department of Animal Science: Dissertations, Theses, and Student Research

Traditional program evaluations emphasize participant demographics, knowledge gain, behavior change, and program impact. However, evaluating participant motivation can provide addition insight into why participants enroll in extension programs and help explain participant engagement and persistence throughout a program. The purpose of this study was to evaluate participant motivation in two online equine extension courses and examine potential relationships between motivation, demographics, and course delivery method, and describe participant engagement in Virtual Horse Judging Camp (VHJC). This cross-sectional study utilized convenience sampling of participants in two online equine extension courses, Horse Adult Leader Training and Educational Resource (HALTER) and VHJC. The …

High Biochar Rate Improves Water Retention In Some Environmentally Sensitive Soils, Samundra Sigdel

Department of Agronomy and Horticulture: Dissertations, Theses, and Student Research

Improving water retention and other hydraulic properties is key to managing soil water and sustaining crop production under fluctuating and extreme weather events. We assessed how wood biochar (836 g C kg^-1) applied at 0, 6.25, 12.5, 25, and 50 Mg ha^-1 affected: i) soil hydraulic properties after 5 years and ii) corn and soybean yield, and biomass production of cereal rye cover crop (CC) and CC mix (cereal rye, radish, and winter pea) in sandy, sloping, and semi-arid soils in the central U.S. Great Plains over 6 years. Biochar affected field saturated hydraulic conductivity (K_{sat …}

Stephen Baenziger, Unl Agronomy & Horticulture, Breeding New Wheat Varieties, Mark Griep, P. Stephen Baenziger

UNL ORCA Interview Series

Stephen Baenziger awarded the ORCA in 2011. He was born in 1951 in Toronto, Canada. When he was an infant, his family immigrated to the U.S., where he grew up in Des Plaines, Illinois. He earned a bachelor's in biological chemistry magna cum laude from Harvard University in Cambridge, Massachusetts. Next, he earned a master's and doctorate in plant breeding and genetics at Purdue University in West Lafayette, Indiana. Over the next decade, he worked for the USDA at Beltsville Agricultural Research Center in Maryland and then at the Monsanto Corporation in St. Louis, Missouri. In 1986, he joined the …

Nebraska And The Midwest Agtech Ecosystem: Benchmarking Innovation Investment And Translation Gaps, Ankit Chandra, Ishani Lal, Brennan Costello

Department of Agricultural and Biological Systems Engineering: Presentations and White Papers

Agricultural innovation is central to the sustainable transformation of food systems, yet the capital that finances it is unevenly distributed relative to where food is produced. This paper develops a diagnostic framework for measuring this mismatch and applies it across the U.S. Midwest from 2021 to 2025, with particular emphasis on Nebraska's structural position within this landscape. Drawing on venture capital deal-flow data, 17 stakeholder interviews, and a novel strength-weakness-opportunity-gap (SWOG) ecosystem mapping methodology, we document $736 million in tracked Midwest AgTech funding across eight states (Nebraska, Iowa, Missouri, Illinois, Indiana, Kansas, North Dakota, and South Dakota). We introduce three …

Personalizable Metabolic Models To Enable Immune Characterization And Drug Discovery, Joshua Loecker

Department of Biochemistry: Dissertations, Theses, and Student Research

Cellular metabolism is reshaped by disease and physiological state, and genome-scale metabolic networks (GSMNs) offer a systematic way to interrogate this biology and identify therapeutic targets. Building a GSMN from expression data, however, requires a sequence of stages including read processing, normalization and gene-activity classification, multi-omic integration, model reconstruction, simulation, and biological interpretation. These are typically handled by disconnected tools spanning multiple programming languages, file formats, and databases. The resulting reliance on heterogeneous interfaces and manual steps threatens reproducibility. This work develops an ecosystem of computational tools that carry an analysis from raw sequencing reads to mechanistic biological interpretation. First, …

Evaluating Relationships Between Immunometabolism And Excess Adiposity Using Anthropometric And Body Composition Measurements, Corina Grimaldo

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Metabolic dysfunction is a key contributor to the development of chronic disease and is associated with excessive adiposity. Though body mass index (BMI) is a common screening tool used to identify possible metabolic dysfunction, it does not consider fat distribution. Other tools are needed to assess body composition and determine fat distribution. In recent studies, it has been suggested that alterations in metabolic processes may occur prior to a clinical diagnosis, and the combination of body composition and blood-based markers can help identify those early changes. The overall objective of this study is to identify low-cost indicators of metabolic dysregulation …

Evaluating Variety- And Market-Class-Specific Effects Of Dietary Pulses On Human Health, Jiayu Tang

Department of Food Science and Technology: Dissertations, Theses, and Student Research

While pulses are globally recognized for their high levels of dietary fibers, protein, and polyphenols, research often focuses on characterizing the physiological effects of a single variety. This approach overlooks the substantial genetic and compositional diversity that exists across pulse varieties and individual market classes, which can differ extensively in nutrient content and structure. These compositional differences have the potential to produce distinct physiological and microbial responses in humans, yet variety- and market-class-specific effects remain poorly characterized.

This thesis uses two complementary research methodologies to investigate the health-relevant effects of different pulse varieties and market classes, providing foundational knowledge to …

Effects Of Anchor Scheme On Torque And Neuromuscular Responses During And Following Fatiguing Isokinetic Forearm Flexion Tasks: Insights From High-Density Electromyography And Wavelet Analysis, Dolores Guadalupe Ortega

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

This study examined the effects of anchor scheme on torque and neuromuscular responses during and following fatiguing isokinetic forearm flexion tasks. Thirteen men (mean ± SD; age: 22.0 ± 1.9 yr; height: 183.0 ± 6.4 cm; body mass: 90.2 ± 18.1 kg) completed pretest and posttest maximal, concentric, isokinetic forearm flexion muscle actions at 30°∙s-1 before and after continual, concentric, isokinetic forearm flexion tasks at 30°∙s-1 at an RPE of 6 (RPE6T) and the torque (TRQ6T) produced during the first repetition of the RPE6T. Monopolar electromyographic (EMG) signals were recorded from the biceps brachii using a high-density EMG sensor. A …

Lost In The Weeds No More! Revision Of The Robust Herb Gall Wasps (Hymenoptera, Cynipidae, Aulacideini) In North America, Louis F. Nastasi, Charles K. Davis, José Luis Nieves-Aldrey, Cecil N. Smith, Simon Van Noort, Ebony G. Murrell, Timothy S. Frey, Chris Friesen, M. J. Hatfield, Heather M. Hines, John F. Tooker, Andrew R. Deans

Department of Entomology: Faculty Publications

We revise the North American fauna of Aulacideini (Hymenoptera: Cynipidae) using morphological, ecological, and genetic (DNA barcode) data, incorporating observations from over 5,000 adult specimens and galls. Prior to revision, the fauna included 24 species in four genera. Six new genera and 25 new species are described, all authored by Nastasi: Argyrix gen. nov., Barathria gen. nov., Cosmita gen. nov., and Ketsia gen. nov., for species previously placed in Antistrophus Walsh; Prixima gen. nov., for a new species inducing galls on Pyrrhopappus DC.; and Tookeria gen. nov., for a new species inducing galls on Silphium L.; Antistrophus frieseni sp. nov., …

Butterfly Taxa Discovery Via Genomic Analysis, Jing Zhang, Qian Cong, Jinhui Shen, Leina Song, Nick V. Grishin

The Taxonomic Report of the International Lepidoptera Survey

Expanding a genomics-guided assessment of butterfly taxonomy, we integrate phylogenetic evidence from all protein-coding genes with morphological considerations to refine our understanding of butterfly systematics and discover new taxa. As a result, 2 subgenera, 39 species, and 5 subspecies are proposed as new (type species in original combinations or type localities are listed in parentheses): Erebia (Magda) magdalena uintana Grishin, ssp. n. (USA: Utah, Uintah Co.) in Nymphalidae Rafinesque, 1815; Myselasia rondea Grishin, sp. n. (Brazil: Rondônia), Myselasia pseudocrinon Grishin, sp. n. (Ecuador: Pastaza), Myselasia paramatuta Grishin, sp. n. (Ecuador: Morona-Santiago), Euselasia anapellos Grishin, sp. n. (Peru: Loreto), …

Interview With Orca Winner John Hibbing, Political Science; How Political Attitudes Correlate With Physiological Traits, Mark A. Griep, John Hibbing

UNL ORCA Interview Series

Dr. John Hibbing was awarded the ORCA in 1993. John was born in 1953 in Paullina, Iowa. He earned a bachelor's in secondary education from Dana College in Blair, Nebraska, but then realized that teaching high school wasn't for him. Instead, he attended the University of Iowa, where he earned a master's and doctorate in political science. In 1981, he joined the University of Nebraska-Lincoln as an assistant professor of political science and rose quickly through the ranks. Initially, he studied the reasons that members of the U.S. Congress retire. This led to a longer-term collaboration with Kevin Smith and …

First Course Portfolio For Plpt 803 Fundamentals Of Scientific Discovery, Hernan Garcia-Ruiz

UNL Faculty Course Portfolios

PLPT 803 Fundamentals of Scientific discovery is a new curse in the Department of Plant Pathology at the University of Nebraska-Lincoln. I designed and developed this course from the ground up. Initially, it was offered as a special topic (PLPT 892-014) for four years. PLPT 803 was approved by the College of Agricultural Sciences and Natural Resources curriculum committee in September of 2025. PLPT 803 is unique within the University of Nebraska system and will be offered for the first time in the fall of 2027. The course is designed for students to learn fundamental scientific skills such as scrutinize, …

Can Generative Ai Make Farming Decisions? Current Status And Future Pathways: A Case Study In Row Crop Production With Chatgpt, Nipuna Chamara, Yufeng Ge, Joe Luck, Yu Pan, Saleh Taghvaeian, Cory Walters, Christopher Proctor, Daran Rudnick, Daren Redfearn

Department of Agricultural and Biological Systems Engineering: Faculty Publications

The agricultural decision-making process is experience-based, knowledge-dependent, time-sensitive, complex, and driven by historical data. Planting, fertilization, irrigation, and chemigation are key categories in farm decision-making, and currently there is no one-shot decision-support tool that covers all these activities. Generative Artificial Intelligence (AI) models are more advanced than traditional machine learning and deep learning models. These models have been trained on vast amounts of data from the internet, allowing them to accept unstructured data in various forms and generate human-like text, solutions to problems, and scenario predictions. Given this capability, we became interested in exploring the potential of generative AI in …

Recognition Of The Spring Flight Of Celastrina (Tutt) (Lycaenidae: Polyommatinae) In Southern New England As An Introgressed Hybrid Species, Harry Pavulaan

The Taxonomic Report of the International Lepidoptera Survey

Populations of Celastrina (“Azure”) butterflies in southern New England have historically been referred to as either C. ladon (Cramer) or C. lucia (W. Kirby) by various authors. Following the discovery of elongated dorsal wing scales in males of C. ladon (D. Wright & Pavulaan, 1999; Ômura et al., 2015)—structures that replace the androconia that are typically present in most Celastrina species—it was believed that this trait was restricted to C. ladon, C. nigra (W. Forbes), and, more recently, C. iryna (Pavulaan, 2025). Microscopic examination of male “Spring Azure” specimens from across southern New …

Effect Of Accelerated Adaptation Programs On Feedlot Performance And Health Of Steers Drenched With Megasphaera Elsdenii And Quantifying And Partitioning Multi-Year Carbon Dioxide And Methane Fluxes In A Grazed Temperate Pasture, Rebecca Mcdermott

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

With strong consumer demand for beef and increasing concern about the environmental impacts of beef production, improving production efficiency and advancing the understanding of the environmental footprint are critical for the long-term sustainability of beef production systems. The first experiment evaluated the effect of accelerated adaptation strategies, using energy intake and cattle behavior, on feedlot performance, carcass characteristics, and health of yearling steers drenched with exogenous Megasphaera elsdenii. Accelerated adaptation programs (0, 7, or 14 d transition to 100% finisher) were compared to a traditional 21-d adaptation. Dry matter intake responded quadratically across treatments, with the greatest intake observed in …

Developing Best Recommendations For Aerial Application And Chemigation Of Insecticides For Western Bean Cutworm (Striacosta Albicosta Smith) Management In Corn, Andrea Rilakovic

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Western bean cutworm, Striacosta albicosta (Smith), is a univoltine moth in North America, recognized as an economic threat to both corn (Zea mays L.) and dry bean (Phaseolus vulgaris L.). In the Midwest of the United States, S. albicosta can cause severe damage by reducing the quantity and quality of corn ears through larval feeding. Currently, options for Bacillus thuringiensis (Bt) proteins that can effectively control S. albicosta are limited, relying on only one Vip3A effective protein, while other growers use insecticide application via airplanes or center pivot irrigation systems, known as chemigation. Given the importance …

A New Subspecies Of Papilio Indra (Papilionidae) From The West Desert Of Utah, Usa, Wayne H. Whaley, Alexander A. Jason, Todd L. Stout

The Taxonomic Report of the International Lepidoptera Survey

Papilio indra bonnevillensis is a new described subspecies partly based on taxonomic rearrangement of its larval host plant reproductive phenology relative to Wasatch Range nominate P. indra. It is geographically isolated in Utah’s West Desert from populations of ssp. nevadensis to the west and ssp. calcicola to the south. In addition to phenological differences compared to these two subspecies, it merits description based on host Lomatium depauperatum which recently speciated from L. grayi, neither of which is used as host by other subspecies of P. indra. The evolution of new host L. depauperatum is …

Comparing Awssi And Traditional Winter Metrics For Predicting Overwinter Survival Of Juvenile Walleye (Sander Vitreus), Camille N. Shifrin

Honors Program: Senior Projects (Public)

Winter conditions are an important driver of recruitment variability in freshwater fishes, yet winter severity is often characterized using single climate metrics. These simplified approaches may not capture the cumulative stress experienced by fishes during winter. The Accumulated Winter Season Severity Index (AWSSI) integrates multiple components of winter climate and may therefore provide a more biologically relevant indicator of overwinter survival. In this study, we compared AWSSI with traditional winter severity metrics to explain interannual variation in overwinter survival of juvenile Walleye (Sander vitreus) in Harlan County Reservoir, Nebraska. Model comparisons using Akaike’s Information Criterion (AIC) indicated that …

Quantitative Genetics, Genomics, And Phenomics In Maize And Sorghum, Nikee Shrestha

Complex Biosystems Program: Dissertations and Student Research

Generating the best crop varieties and hybrids requires identifying genes associated with the phenotype of interest and screening thousands of varieties across multiple locations. Quantitative genetics, along with comparative genomics, phenomics, and machine learning approaches, can help us identify target genes associated with the phenotype of interest to develop the right genotypes. Satellite platforms offer logistical and technical advantages in scalability and accessibility and could facilitate plot-level predictions, especially with steadily improving spatial resolution, thereby empowering the large-scale screening of thousands of genotypes across diverse locations. In the first chapter, I evaluated over 20,000 plot-level images of over 80 hybrid …

Three Essays On Veterinary Drug Maximum Residue Limits, Akinbode Okunola

Department of Agricultural Economics: Dissertations, Theses, and Student Research

This dissertation consists of three essays: the first examines the prevalence of veterinary drug maximum residue limits (MRLs), the regulatory behavior of countries in setting these MRLs, and the degree of country-level compliance with international standards of Codex Alimentarius (Codex). The second evaluates the extent to which compliance with international standards across countries can help to manage potential transmission of resistant bacterial from animals to humans through consumption of contaminated meat, dairy and aquaculture products. The third focuses on how differences in regulatory standards across countries can impact international trade in the global beef, pork, and poultry markets.

The first …

Improving Genomic Prediction For Feed Efficiency Traits In Beef Cattle Using Microbiome As An Intermediate Omics, Egodage Bhagya Sewwandi Samarakoon

Department of Animal Science: Dissertations, Theses, and Student Research

Feed efficiency traits, including feed conversion ratio (FCR), average daily gain (ADG), and average daily dry matter intake (ADDMI), are economically important in beef cattle production. Emerging evidence suggests that host genetics influences feed efficiency traits through the microbiome. This study evaluates the integration of microbiome data as an intermediate layer in the Neural Network Mixed Model (NNMM), which hierarchically models genotype–microbiome–phenotype relationships as a unified regulatory network to improve genomic prediction accuracy. To reduce the computational burden of NNMM, microbiome features dimension were reduced using principal component analysis (PCA) and direct feature selection of top-ranked open reading frames (ORFs) …

The Detection Of Morbidity Using A Remote Sensing Ear Tag On Newly Received Steers And Feedlot Performance And The Effects Of Feeding Experior And Optaflexx On Carcass Characteristics And Meat Tenderness In Beef Steers, Lauryn O. Smidt

Department of Animal Science: Dissertations, Theses, and Student Research

Two experiments were conducted to evaluate the effects of remote sensing health technology and growth-promoting feed additives on feedlot cattle performance, health outcomes, and carcass characteristics. In the first study, 638 crossbred steers (initial BW = 270 kg; SD = 18.6 kg) were used in a randomized block design to assess the effectiveness of a remote sensing ear tag (RST; HerdDogg, Seward, Nebraska) versus conventional pen-rider observation (PR) for detecting morbidity during a 35-d receiving period and subsequent 180-d finishing period. No differences were detected between PR and TAG for ending BW, average daily gain (ADG), dry matter intake (DMI), …

Carcass Mass And Cooling Dynamics As Determinants Of Beef Color, Tenderness, And Dark-Cutting Risk, Grace C. Johnson

Department of Animal Science: Dissertations, Theses, and Student Research

Discoloration in beef has important implications to the beef industry. Dark-cutting (DC) beef remains one of the most economically significant color defects; however, industry prevalence has only marginally declined (≈ 0.1%) despite mitigation efforts. This lack of improvement largely stems from research focused on pre-harvest stress and glycogen depletion leading to dark, firm, and dry (DFD) beef. However, not all darkcutting beef originates from DFD phenotypes. Atypical dark-cutting (ATDC) phenotypes have recently been observed and do not exhibit the classic metabolic indicators of DFD. This trend coincides with steadily increasing carcass weights in the beef industry and raises the possibility …

From Prairie To Practice: Forensic Taphonomy, Ethics, And Regional Ecology In Southeastern Nebraska, Jessica F. L. Gammage

Department of Anthropology: Theses and Student Research

Forensic taphonomy examines the postmortem processes that affect human remains within specific environmental contexts and plays a critical role in medicolegal death investigation. Despite significant advances in decomposition research, experimental studies remain geographically and environmentally uneven, limiting the transferability of postmortem interval (PMI) estimation methods across regions. The Central Great Plains are underrepresented in forensic taphonomic research despite its distinct ecological and geomorphological characteristics.

This thesis evaluates southeastern Nebraska as a specific regional setting for forensic taphonomic research by integrating ecological, pedological, and geomorphological data with current forensic literature. Tallgrass prairie vegetation, loess-derived soils, seasonal moisture variability, and dynamic fluvial …

Rehumanizing Anatomized Individuals: Using Osteobiographies As A Step Towards Reparative Justice, Lillie C. Turpin

Department of Anthropology: Theses and Student Research

In 1985, India banned the export of human remains. This ended the major trade route for primarily US and European anatomical supply companies. Until this point, companies like Carolina Biological Supply exploited and erased vulnerable people's identities, molding them into anonymous anatomical specimens. This study investigates the life and postmortem history of twenty-five individuals, previously used as anatomical specimens, housed at the University of Nebraska–Lincoln. Using an osteobiographical approach, this research reconstructs aspects of these individuals' lived experiences and examines how anatomical preparation practices reflect structural violence and apathy.

Skeletal analysis of twenty-five individuals revealed a range of biological profiles, …