Life Sciences Commons^™

Lingnan Gardeners Newsletter (No. 68) = 彩園通訊 (第68期), Lingnan Gardeners, Centre For Cultural Research And Development, Lingnan University

Lingnan Gardeners Newsletter 嶺南彩園通訊

No abstract provided.

Deep Semantic Hashing For Aerial Livestock Detection, Shosei Anegawa, Franz Kurfess, Sumona Mukhopadhyay

College of Engineering Summer Undergraduate Research Program

The goal of this project is to be able to accurately detect and count livestock in footage captured by a drone in real time. The main problems with this arise from the fact that a drone can only carry limited computing resources, and hashing is conventionally thought of as a great method of doing image classification very quickly and thus even on low-power devices. In this project, we use both a Faster-RCNN, which is a state-of-the art object detection model as a benchmark to develop a hashing model that can perform a similar task much more quickly. These two models …

A Review Of Three-Dimensional Vision Techniques In Food And Agriculture Applications, Lirong Xiang, Dongyi Wang

Biological and Agricultural Engineering Faculty Publications and Presentations

In recent years, three-dimensional (3D) machine vision techniques have been widely employed in agriculture and food systems, leveraging advanced deep learning technologies. However, with the rapid development of three-dimensional (3D) imaging techniques, the lack of a systematic review has hindered our ability to identify the most suitable imaging systems for specific agricultural and food applications. In this review, a variety of 3D imaging techniques are introduced, with their working principles and applications in agriculture and food systems. These techniques include Structure lighting-based 3D imaging, Multiview 3D imaging system, Time of Flight (ToF)-based 3D imaging system, Lighting Detection and Ranging (LiDAR), …

Trauma Prevalence And Desire For Trauma-Informed Coaching In Collegiate Sports: A Mixed Methods Study, Elizabeth Alma Hertzler-Mccain, Aerin Mcquillen, Shalini Setty, Stephanie Lopez, Erica Tibbetts

Exercise and Sport Studies: Faculty Publications

This study investigated trauma prevalence amongst collegiate student-athletes and openness towards trauma-informed coaching practices among athletes and coaches at two small Division III colleges. Surveys gathered quantitative data from athletes (n = 91) and coaches (n =18) and qualitative data from athletes (n = 33). Quantitative results indicated that 52.7% of athletes experienced at least one potentially traumatic event during their lifetime. The most prevalent trauma was unwanted sexual contact. Additionally, 50.5% of athletes experienced sport-based harassment or abuse during their lifetime, with 21.7% of affected athletes experiencing said abuse in college sports. Athletes reported that 8 out of 10 …

Pollinators Of Gonzaga University, Sophie O'Shei, Gary Chang

Biology Student Scholarship

This data is from a public science project conducted by Sophie O'Shei (Gonzaga '24) investigating pollinator diversity in and around Gonzaga's campus. Photos of plants and pollinators were submitted using iNaturalist, an online platform and app that allows users to upload photos of animals, plants, insects, etc. and identifies their species using AI. It also tracks where photos were taken. Users were then able to go through uploaded images and suggest what species they identify in the photo, which can confirm or correct the AI's identification.

The project started during Earth Week 2023, giving students, staff, and other members …

Alfred Russel Wallace Notes 27. When Wallace Broke With Darwin., Charles H. Smith

Faculty/Staff Personal Papers

The year 1866 was the first year Alfred Russel Wallace showed definite signs of breaking with Darwin over the limits of natural selection. Attention is drawn to a July 1866 exchange of letters between the two, and how this foreshadowed what followed.

Compensating For Effects Of Autotomy On Locomotion In Stink Bugs (Halyomorpha Halys), Lilian C. Jubb

Longwood Senior Thesis Proposal

Autotomy is the voluntary release of an appendage, typically to avoid predation or entrapment. Autonomy of a single leg can have minimal effects on locomotion in arthropods with more than six legs. Hexapods, however, use a double-tripod gait which is completely disrupted with the loss of a single leg, thus locomotor performance should be greatly reduced leading to lower survival. Autotomy is so costly to locomotion that some insects regenerate a lost limb in a subsequent molt leading to reduced investment in other important functions (e.g. reproduction). Autotomy persists in adult hexapods with no opportunity for regeneration, which suggests some …

Genomic Variations Explorer (Genvarx): A Toolset For Annotating Promoter And Cnv Regions Using Genotypic And Phenotypic Differences, Yen On Chan, Jana Biová, Anser Mahmood, Nicholas Dietz, Kristin Bilyeu, Mária Škrabišová, Trupti Joshi

Biomedical Sciences

The rapid growth of sequencing technology and its increasing popularity in biology-related research over the years has made whole genome re-sequencing (WGRS) data become widely available. A large amount of WGRS data can unlock the knowledge gap between genomics and phenomics through gaining an understanding of the genomic variations that can lead to phenotype changes. These genomic variations are usually comprised of allele and structural changes in DNA, and these changes can affect the regulatory mechanisms causing changes in gene expression and altering the phenotypes of organisms.Inthisresearchwork,wecreatedtheGenVarXtoolset,thatisbacked by transcription factor binding sequence data in promoter regions, the copy number variations …

Urban Homestead Education For Backyard Gardeners In Utah, Andree Walker Bravo

Outcomes and Impact Quarterly

The Utah State University Extension Urban Homestead Expo caters to individuals and families interested in maximizing their self-sufficiency while living in an urban setting. The Urban Homestead Expo is designed to provide content to those wanting more than basic gardening classes, but who may not identify as producers. Workshops include backyard chickens, fruit production, water-wise irrigation, beekeeping, vegetable-integrated pest management, water harvesting, and other sustainability-related topics.

Influence Of Maximal Strength On Joint-Specific Function And Coordination Across Stretch-Shortening Cycle Task Demands, Michael H. Haischer

Dissertations (1934 -)

Jumping involves the stretch-shortening cycle (SSC) and is a familiar movement in many sports. More explosive jumping may provide a competitive advantage, but the biomechanics that relate to optimal SSC utilization for performance are not well understood. Furthermore, while strength relates to better jump performance and may facilitate mechanisms like joint stiffness that benefit SSC utilization, how strength impacts adjustments to biomechanics and locomotor functional roles of the lower extremity joints under different SSC demands has not been established. Therefore, the purpose of this dissertation was to investigate how strength influences biomechanics and functional roles of the ankle, knee, and …

Expert Panel Curation Of 113 Primary Mitochondrial Disease Genes For The Leigh Syndrome Spectrum, Elizabeth M Mccormick, Kierstin Keller, Julie P Taylor, Alison J Coffey, Lishuang Shen, Danuta Krotoski, Brian Harding, Xiaowu Gai, Marni J Falk, Zarazuela Zolkipli-Cunningham, Shamima Rahman

Children’s Nutrition Research Center Staff Publications

Objective: Primary mitochondrial diseases (PMDs) are heterogeneous disorders caused by inherited mitochondrial dysfunction. Classically defined neuropathologically as subacute necrotizing encephalomyelopathy, Leigh syndrome spectrum (LSS) is the most frequent manifestation of PMD in children, but may also present in adults. A major challenge for accurate diagnosis of LSS in the genomic medicine era is establishing gene-disease relationships (GDRs) for this syndrome with >100 monogenic causes across both nuclear and mitochondrial genomes.

Methods: The Clinical Genome Resource (ClinGen) Mitochondrial Disease Gene Curation Expert Panel (GCEP), comprising 40 international PMD experts, met monthly for 4 years to review GDRs for LSS. The GCEP …

Inaccurate Confidence Intervals Reported In “The Healthy Kids & Families Study: Outcomes Of A 24-Month Childhood Obesity Prevention Intervention”, Xingsheng Li, Abu Bakkar Siddique, Lilian Golzarri-Arroyo, Stephanie L Dickinson, Theodore K Kyle, David B Allison

Children’s Nutrition Research Center Staff Publications

No abstract provided.

Front Matter

The Synapse: Intercollegiate science magazine

No abstract provided.

The New Miracle “Meat”: The Future Food Industry’S Approach To Young Jackfruits, Minh Tran Ha

The Synapse: Intercollegiate science magazine

No abstract provided.

Primates And Pregnancy: Lessons In Childbirth From Human Evolution, Amelia Merithew

The Synapse: Intercollegiate science magazine

No abstract provided.

Pushing Therapeutic Boundaries: Ipsc Therapy For Duchenne's Muscular Dystrophy, Long Ly

The Synapse: Intercollegiate science magazine

No abstract provided.

Issue 37

The Synapse: Intercollegiate science magazine

No abstract provided.

An Urgent Need For Classroom Support: Uncovering Developmental Dyslexia’S Effect On Classroom Anxiety, Susan Robinson-Cloete

The Synapse: Intercollegiate science magazine

No abstract provided.

The Cognitive Significance Of Mathematics: What The Educational And Psychological Literature — New And Old — Can Tell Us About The Importance Of Learning Math, Haddy Dardir

The Synapse: Intercollegiate science magazine

No abstract provided.

Meet The Staff

The Synapse: Intercollegiate science magazine

No abstract provided.

Transcriptomics Of Temporal- Versus Substrate-Specific Wood Decay In The Brown-Rot Fungus Fibroporia Radiculosa, Byoungnam Min, Steven Ahrendt, Anna Lipzen, Cristina E. Toapanta, Robert A. Blanchette, Dan Cullen, David Hibbett

Biology

Brown-rot fungi lack many enzymes associated with complete wood degradation, such as lignin-attacking peroxidases, and have developed alternative mechanisms for rapid wood breakdown. To identify the effects of culture conditions and wood substrates on gene expression, we grew Fibroporia radiculosa in submerged cultures containing Wiley milled wood (5 days) and solid wood wafers (30 days), using aspen, pine, and spruce as a substrate.

Genome Assembly Of The Foot-Flagging Frog, Staurois Parvus: A Resource For Understanding Mechanisms Of Behavior, Mika A. Holtz, Riccardo Racicot, Doris Preininger, Adam M.M. Stuckert, Lisa A. Mangiamele

Biological Sciences: Faculty Publications

Elaborate and skilled movements of the body have been selected in a variety of species as courtship and rivalry signals. One roadblock in studying these behaviors has been a lack of resources for understanding how they evolved at the genetic level. The Bornean rock frog (Staurois parvus) is an ideal species in which to address this issue. Males wave their hindlimbs in a "foot-flagging"display when competing for mates. The evolution of foot flagging in S. parvus and other species is accompanied by increases in the expression of the androgen receptor gene within its neuromuscular system, but it remains unclear what …

Belowground Growth Strategies Of Native And Invasive Rhizomatous Perennial Grasses In Response To Precipitation Variability, Clipping, And Competition, Surendra Bam, Jacqueline P. Ott, Jack Butler, Lan Xu

Natural Resource Management Faculty Publications

Invasive clonal species may exhibit different growth strategies than their native clonal competitors. In this study, we examined the spatial distribution of tiller outgrowth and the bud bank by comparing the investment in phalanx versus guerilla growth of a native and invasive perennial grass in North America. We also examined the efect of altered precipitation frequency, clipping, and competition on their clonal growth strategies. Investment in phalanx and guerilla growth was assessed by examining live propagule and tiller production from the plant crown versus its rhizomes. Although invasive Bromus inermis and native Pascopyrum smithii exhibited similar clonal growth strategies as …

Economic And Environmental Performance Of Integrated Crop-Livestock Systems: Resilience To Uncertainties And An Opportunity For Sustainable Intensification, Maroua Afi

Dissertations and Doctoral Documents, University of Nebraska-Lincoln, 2023–

Integrated crop-livestock systems are promoted as an alternative for sustainable intensification of food production. They have the potential to offer enhanced input efficiency and maintain a diversified livelihood which plays an important role in building resilience of agricultural systems. This work aims to evaluate the technical efficiency of “Integrated Crop-Livestock Systems” (ICLS), “Specialized Livestock Systems” (SLS) and “Specialized Cropping Systems” (SCS) and to identify the determinants behind inefficiencies in these systems. It also aims to assess the resilience against climate variability and market fluctuations. The first chapter provides a comparative analysis and an overview of technical efficiency assessment of farming …

Flujos De Servicios Ecosistémicos En Un Área Marina Protegida Del Atlántico Sur: Perspectivas Desde El Análisis De La Teoría De Redes, Mitch Porter

Independent Study Project (ISP) Collection

En cuestiones de gestión de áreas protegidas, los servicios ecosistémicos se tienen cada vez más en cuenta junto con la conservación de la biodiversidad. Sin embargo, las decisiones que se toman sobre la conservación de los servicios ecosistémicos no suelen incluir los posibles efectos en cascada de la pérdida de biodiversidad sobre la provisión de servicios. Los conocimientos de la teoría de redes y los estudios de robustez pueden proporcionar una metodología para evaluar la vulnerabilidad de estos servicios frente la estructura trófica de los ecosistemas que los proveen. A través de una serie de simulaciones de extinción para la …

On The Rocks, Below The Rocks: A Study Of Intertidal Life In The Low, Middle And High Zones Of The Puerto Cabuyal – Punta San Clemente Marine Reserve During An El Niño Event, Juliana M. Ferrer

Independent Study Project (ISP) Collection

The rocky intertidal zone is one of the most difficult environments for organisms to survive in due to its harsh biotic and abiotic conditions. As such, it is also one of the best indicators of climate change and an important barrier to beach erosion. This study looked at the rocky intertidal zone of the Puerto Cabuyal-Punta San Clemente Marine Reserve in the Manabí province of Ecuador, with a focus on observing and identifying the organisms found in the area. Data was collected along 30 m transects at varying elevations along the shore using quadrants of two sizes: 50x50 cm for …

Soil Succession: Short And Long-Term Impacts Of Grazing On Soil Properties In A Tropical Montane Cloud Forest, June Curtis

Independent Study Project (ISP) Collection

Cattle ranching is the leading cause of deforestation in South America, causing long-lasting alterations to the continent's landscape and ecology. Tropical montane cloud forests (TMCFs) are a rare ecosystem particularly vulnerable to the effects of land conversion to pasture, a process which has implications ranging from biodiversity loss to soil degradation. Grazing is known to significantly alter soils' physical structure through processes of compaction and erosion as well as significant additions of organic matter. Silvopasture, or the integration of pasture and forest, has emerged as an alternative to traditional grazing practices with the hope of mitigating environmental and soil degradation. …

Analysis Of The Effects Of Nafta On Rural Farmers In Mexico: Agriculture And Immigration, Kevin Xavier Garcia-Galindo

Independent Study Project (ISP) Collection

This research paper examines the effects of the North American Free Trade Agreement (NAFTA) on agricultural workers in rural Mexico and immigration rates from those regions. The paper aims to investigate the validity of claims regarding the impact of NAFTA on immigration and agriculture, which are often interconnected. By focusing on the rural farming communities of Mexico, the study incorporates ethnographic perspectives to complement existing academic research on NAFTA. The research question explores how NAFTA affected agricultural workers in rural Mexico and its implications for immigration patterns. Through a comprehensive literature review and interviews with individuals involved in rural farming, …

Reef Fish Wariness Behavior: Fish Flight Initiation Distance Mediated By Territoriality And Body Size In Three Reef Sites Off The Western Coast Of Isla Colón, Bocas Del Toro, Panamá, Alina G. Irvine

Independent Study Project (ISP) Collection

Coral reefs are highly productive and diverse underwater ecosystems, providing a variety of environmental services including sand generation, nutrient processing, fish supply, and tourism. However, coral reefs have been increasingly impacted by natural and anthropogenic disturbances, which has negatively affected fish security within their environment. A significant observation is the reduction in evasive behaviors among reef fish in marine reserves compared to those exposed to anthropogenic threats. The present research aims to investigate the factors mediating fish wariness behavior through an exploration of the roles of territoriality and body size on fish flight initiation distance (FID). FID is the distance …

Bryophyta Sensu Stricto Presence And Function In The Epiphytic Ecosystems Of The Tropical Montane Cloud Forests Of El Valle De Anton, Teaghan Duff

Independent Study Project (ISP) Collection

Bryophyta sensu stricto, colloquially known as moss, is often found growing epiphytically in cloud forest ecosystems. Under these conditions, moss may fulfill a secondary foundational species (FS) role, supporting increased habitat for other organisms while remaining dependent on the primary FS host tree. Exploring the dual relationship of moss as both a dependent and supportive organism allows for better understanding of its connective role within ecosystems. Research in the cloud forests of El Valle de Anton focused on relative abundance, environmental surroundings, morphology, and microclimate of mosses to offer baseline data on these connections. Mosses along four different trails within …