Life Sciences Commons^™

Biological Soil Crusts: Effects Of Environmental Change On Dryland Microbes, Mariah T. Patton

Biology ETDs

Climate change is increasing rainfall variability, altering nutrient availability, and causing warming in drylands, which comprise approximately ~36% of Earth's terrestrial surface. These expanding ecosystems contribute the most to interannual variability in the global carbon cycling. Biological soil crusts (biocrusts)—often called the "skin of the Earth"—are critical components of dryland surfaces, consisting of successional microbial communities dominated initially by Cyanobacteria and later by a more diverse composition with other bacteria, archaea, lichen, fungi, and algae. These communities play essential roles in soil aggregation, erosion prevention, and carbon and nitrogen cycling. However, our ability to predict biocrust responses to environmental change …

Fisheries Research Report No. 358 - Recreational Fishing For Blue Swimmer Crab In Cockburn Sound: Estimates Of Effort And Catch In 2024/25, Alissa C. Tate, Claire B. Smallwood, Eva K M Lai

Fisheries Research Reports

The Cockburn Sound Blue Swimmer Crab (Portunus armatus) fishery was reopened to recreational fishing in December 2024 following a 10-year closure. Monitoring was essential to assess fishing effort and catch for this species.

A boat ramp (bus route) survey at four key access points (Leeuwin, Woodman Point, Palm Beach, and Point Peron) and shore-based roving creel survey (Fremantle South Mole to Point Peron) were used to collect data from December 2024 to May 2025. These surveys provide estimates of fishing effort, total catch (kept and released), harvest and catch rates for Blue Swimmer Crab in Cockburn Sound.

A total of …

Investigating The Missense Mutation In Men1 At Amino Acid Position 331 Changing Asparagine To Isoleucine, Anika Prasad

Expo Student Presentations

2026 Spring Expo Online Poster Presentation

• Biological & Life Sciences

Optimizing Barley Stripped Mosaic Virus Coat Protein Stability For Palladium Nanorod Biotemplating Via Terminal His-Tag Positioning, Emilie Hayes

Honors Theses

Viral biotemplating has become an exciting approach towards the production of nanomaterials with a controlled size and morphology. Rod-shaped plant viruses provide structurally consistent scaffolds that can guide the assembly of inorganic nanostructures, which can offer a biologically inspired platform to nanoscale material design. In the current study, computational modeling was used to examine the effect of palladium precursor chemistry on the reaction with viral protein templates. Molecular dynamics simulations were performed to test the stability of the viral scaffold, and the influence of N-terminal and C-terminal His-tag on protein flexibility. These simulations revealed that the viral coat protein is …

An Insight Into The Venom Gland Proteome Of The Two-Spined Trap-Jaw Ant, Odontomachus Haematodus, Aaron Morgan

Honors Theses

Ants are ecologically important and highly abundant organisms, playing key roles in many ecosystems. One recently introduced species in the southeastern United States is Odontomachus haematodus (the two-spined trap-jaw ant), a South American native that has often been misidentified, contributing to limited research on its biology and venom composition. This study aimed to provide the first detailed characterization of the venom apparatus and proteome of O. haematodus. Specimens were collected and dissected, and venom-related proteins were extracted and analyzed using SDS-PAGE and tandem mass spectrometry (MS/MS-ESI). Confocal microscopy was also used to visualize the sting apparatus, including F-actin filaments and …

Characterization Of A Core Fungal Community And Captivity-Induced Gut “Mycobiome” Change In Fowler's Toad (Anaxyrus Fowleri), Alexander J. Bradshaw, Sinlan Poo, Tracey E. Malter, Rylie M. Strasbaugh, Brianna Bodner, Madison R. Hincher, Anne Devan-Song, Javier F. Tabima

Biology

Amphibious animals, such as frogs, are found at the intersection of aquatic and terrestrial ecosystems. They may serve as keystone and sentinel species and play key roles in nutrient cycling and food webs. In recent decades, amphibians have experienced drastic population declines due to habitat loss, climate change, and disease. These declines have prompted investments in ex situ conservation and captive breeding programs, which aim to reduce extinction risk by creating assurance colonies and reintroducing individuals once threats are mitigated. A critical component of these programs is proper husbandry, which ensures the health and longevity of captive populations and their …

Neutrophil-Microglia Interaction Drives Motor Dysfunction In A Neuromyelitis Optica Model Induced By Subarachnoid Aqp4-Igg, Fangfang Qi, Vanda A Lennon, Shunyi Zhao, Yong Guo, Husheng Ding, Caiyun Liu, Whitney M Bartley, Tingjun Chen, Claudia F Lucchinetti, Long-Jun Wu

Faculty, Staff and Student Publications

Neutrophils and neutrophil extracellular traps (NETs) contribute to early neuromyelitis optica (NMO) histopathology initiated by IgG targeting astrocytic aquaporin-4 (AQP4) water channels. Yet, the mechanisms underlying neutrophil recruitment and their pathogenic roles in disease progression remain unclear. To investigate molecular-cellular events preceding classical complement cascade activation in a mouse NMO model, we continuously infused, via spinal subarachnoid route, a non-complement-activating mouse monoclonal AQP4-IgG. Parenchymal infiltration of netting neutrophils containing C5a ensued with microglial activation and motor impairment but no blood-brain barrier leakage. Motor impairment and neuronal dysfunction both reversed when AQP4-IgG infusion stopped. Two-photon microscopy and electron microscopy-based reconstructions revealed …

Structural-Functional Analyses Of The Huntingtin/Hap40 Complex In Drosophila And Humans, Stephen M Farmer, Amanda Solbach, Shiyu Xu, Beatriz Rios, Xin Ye, Amy Gao, Daniela Covarrubias, Yue Yu, Lili Ye, Vicky Chuong, Erin Furr Stimming, Haiqing Zhao, Sheng Zhang

Faculty, Staff and Student Publications

Huntington's disease (HD) is a neurodegenerative disorder caused by an abnormal CAG expansion in the Huntingtin (HTT) gene. Given its simple genetic cause but complex pathogenic mechanisms, interest in targeting HTT for HD treatment is growing, necessitating a clear understanding of HTT regulation. HTT protein primarily exists in a core complex with HAP40, forming a highly ordered structure with two large globular domains connected by a bridge. We previously demonstrated that HAP40 is conserved in

Epigenetic Mechanisms For Mediating The Transmission Of Prenatal Maternal Stress And Associated Neurodevelopmental Outcomes, Kaylee Vis

Senior Honors Theses

The hypothalamic-pituitary-adrenal (HPA) axis is the primary stress response system responsible for regulating cortisol release. During pregnancy, maternal stress can dysregulate the HPA axis, leading to elevated cortisol and corticosterone levels that impact fetal development. Excessive prenatal exposure to stress has been associated with alterations in fetal brain structure and function, increasing the risk for neurodevelopmental disorders such as autism spectrum disorder, attention-deficit/hyperactivity disorder, and anxiety. Emerging research supports the idea that these neurodevelopmental effects may be transmitted through epigenetic mechanisms. However, a gap remains in the literature regarding the specific mechanism of interaction between environmental stressors, heritable epigenetic information, …

Sox18 Unleashed Exploring The Transcriptomic Landscape - Differential Gene Expression Analysis Via Rna Seq In Overexpressed Sox18, Van Nguyen, Kahlie Hernandez, Monabelle Elbayeh

Posters - 2026

Cancer remains a leading cause of death worldwide, and childhood sarcomas such as Rhabdomyosarcoma (RMS) and Ewing Sarcoma (ES) are particularly aggressive with limited targeted treatment options. Despite advancements in cancer therapies, metastatic sarcomas still have a survival rate below 30%, emphasizing the need for new therapeutic targets. SOX18, a transcription factor has played a role in vascular development and endothelial differentiation, functioning as a key driver of angiogenesis. In cancer, increased SOX18 expression has been linked to dysregulated cell migration, invasion, and therapy resistance mechanisms. However, the extent to which SOX18 influences RMS and ES at the transcriptional level …

Detecting Cancer Genes Using Graph Neural Networks, Marvin Masabo Nkaka

Posters - 2026

• Cancer survival prediction is challenging due to the complexity of genomic data and limited samples especially for rarer cancer types. • To address this challenge, we developed an Artificial Neural Network (ANN) model for survival analysis using RNA-sequencing gene expression data from The Cancer Genome Atlas (TCGA). • Moreover, a key concept we investigate was how transfer learning enhanced our model’s performance especially for rarer cancer types difficult to perform accurate survival analysis due to their limited samples.

Developing 'A Guide To Agricultural Education Advisory Committees: Development, Uses, And Transitions', Christine Schuler

Department of Agricultural Leadership, Education, and Communication: Dissertations, Theses, and Student Research

This project developed a practical guide to support agricultural education advisory committees in their development, use, and long-term sustainability. Strong school-community partnerships are essential to effective agricultural education programs, particularly in small, rural communities where programs serve as connections between the school and local industry. Advisory committees play a critical role in maintaining these relationships, yet many agricultural educators lack clear, accessible resources to guide this work. This project addressed that need by creating a comprehensive, practice-based guide established from research and professional experience.

This guide started from a review of literature on school-community partnerships, advisory committees, and agricultural education …

Factors Influencing Sex-Based Movement Patterns In The Banded Garden Spider, Argiope Trifasciata (Forskal, 1776), Brandon R. Marrone

School of Biological Sciences: Dissertations, Theses, and Student Research

Movement is a fundamental ecological process shaping how individuals acquire mates, secure resources, and navigate heterogeneous landscapes. In species with extreme sexual size dimorphism (eSSD), such as the orb‑weaving spider Argiope trifasciata, males and females are predicted to experience different movement pressures driven by their reproductive roles. This thesis examines how individual traits and environmental conditions jointly influence movement across both sexes. Across two field seasons, we used intensive mark–recapture methods to quantify natural movement patterns of males and females within mapped prairie plots. The first chapter tested long‑standing predictions gravity hypothesis, which posits that smaller males benefit from …

A Test Case For Raccoon Roundworm Anthelmintic Baiting In Western Virginia, Karen Powers, W. Jayme Viers, Carolyn K. Rossmeisl, L Kristen Page

Virginia Journal of Science

As a test case to determine the efficacy of anthelmintic baiting to reduce raccoon roundworm (Baylisascaris procyonis) prevalence in western Virginia, we deployed baits in a mountainous area of Roanoke Co., Virginia that historically was occupied by Allegheny woodrats (Neotoma magister). We deployed anthelmintic baits at 6-wk intervals from August to December 2024 at a density of 100/km². We opportunistically collected raccoon (Procyon lotor) scat in the drop area from August 2024 to May 2025 and found a marked decline in prevalence of raccoon roundworm in the samples. Deeming this a measured …

Production Of Black And Navy Beans In Virginia, Harbans L. Bhardwaj, Satya S. S. Narina Ph.D.

Virginia Journal of Science

An urgent need exists in Virginia and adjoining states to identify crops to replace declining tobacco acreage. Although not traditionally grown in the region, dry beans (Phaseolus vulgaris L.) have considerable potential as alternative summer crops due to their nutritional benefits and increasing consumer demand. Information on the production potential of these crops in Virginia, however, is not yet available. To remedy this situation, replicated field trials were conducted over three years with six black and four navy bean varieties to characterize grain yields following three row spacings and three planting times. Black beans significantly out-yielded navy beans (2095 …

Enhancing Urban Garden Capacity By Linking Biodiversity And Ecosystem Function, Mary T. Nguyen, Carleen Rauh, Shelby Gresch, Charlotte Correiro, Heidi Elmendorf, Adriane Fugh-Berman, Gina Wimp, Alexandra L. Decandia

Virginia Journal of Science

Urban agriculture broadly describes food and plant cultivation in metropolitan areas. While biodiversity is thought to support ecosystem health and resilience, the relationship between above-ground and below-ground diversity has been understudied in urban green spaces. This study examines plant, animal, bacterial, and fungal diversity across three distinct urban habitats: a turf lawn, a forb garden, and a farming space. Using bacterial 16S rRNA and fungal ITS2 sequencing, soil nutrient analyses, and surveys of vegetation and wildlife, we connect diverse philosophies in urban agriculture to their role in advancing community diversity and ecosystem function. We found that different urban gardens support …

Dietary Influence And Neurodegenerative Disease Risk: Insight From Alzheimer’S And Parkinson’S Disease, Madison Wirt

Honors Projects

As populations age, neurodegenerative diseases (NDD) become significantly more prevalent and impactful on patients and families. Clinical research has suggested a correlation between diet, gut health, neuroinflammation and mitochondrial dysfunction to the onset and development of specific and severe NDDs, especially Alzheimer’s disease (AD) and Parkinson’s disease (PD). This research focuses on the relationship behind the gut-brain axis, micronutrient status and how diet influences the development of both AD and PD. Ten randomized, controlled trials were analyzed from the literature to investigate the impact of these factors on the inflammatory, metabolic and antioxidant processes. The studies focused on the use …

Lingnan Gardeners Newsletter (No. 78) = 彩園通訊 (第78期), Lingnan Gardeners, Centre For Cultural Research And Development, Lingnan University

Lingnan Gardeners Newsletter 嶺南彩園通訊

No abstract provided.

First High-Quality Genome Assembly Of Umbelopsis Nana Isolated From Forest Soil, Ryuka Iizuka, Tomohiro Suzuki, Nozomu Watanabe, Javier F. Tabima, David Hibbett, Yoko Katayama, Makoto Yoshida

Biology

Species of the genus Umbelopsis are ubiquitous soil saprotrophic fungi known for their role in ecological nutrient cycling and biotechnological potential in lipid production. Here, we present the genome assembly of Umbelopsis sp. strain THIF13, which is characterized by its capability to produce carbonyl sulfide. Using PacBio Sequel long-read data, a high-quality genome assembly was generated comprising 18 contigs totaling 27.2 Mb, which is larger than other Umbelopsis genomes, with an N50 of 1.77 Mb. Notably, 16 contigs were flanked by telomeric repeats at both ends. The assembly showed high completeness, with 98.1% complete Benchmarking Universal Single-Copy Orthologs and 11.15% …

Alabama Prairie Reconstruction: Comparing Management Pathways For A Southeastern Landscape, Cecelia R. Geyer

Theses

Southeastern prairies are highly biodiverse yet increasingly threatened by land-use change, fire suppression, and habitat fragmentation. These disturbance-dependent systems rely on periodic fire and grazing to maintain plant diversity and ecosystem function. This study evaluates prairie restoration strategies by testing predictions from the Intermediate Disturbance Hypothesis and the Patch Mosaic Burn Hypothesis. The study site was divided into three treatments: prescribed burned only (B), prescribed burned with mowing (BM) to simulate grazing, and an undisturbed control (C). A standardized mix of native plant seeds was broadcast across all treatments. Ecosystem health and function were evaluated using plant community diversity and …

Perceived Barriers To Integrated Crop–Livestock Systems: Evidence From A Nebraska Producer Survey, Omid Tarashtwal

Department of Agricultural Economics: Dissertations, Theses, and Student Research

Integrated crop-livestock systems offer agronomic, economic, and environmental benefits, yet reintegration has been slow across the Northern Great Plains despite sustained interest. Existing research has documented barriers to transition conceptually, but quantitative evidence on which barriers producers perceive as most important and which producer and operation characteristics are associated with stronger barrier perceptions remains limited. This thesis addresses that gap using data from the 2023 Nebraska Agriculture Operator Survey.

The analysis focuses on 241 Nebraska producers, including 179 crop-only and 62 livestock-only operations. Seven models are estimated, combining ordered logit estimation for single-item barriers with linear regression for averaged barrier …

Do Young Belugas Play More Or Less Than Adult Belugas?, Winter Saldana

Posters - 2026

★ The presence of play is used as an indicator of well-being in many species including belugas (Hill et al., 2017; Hill & Ramirez, 2014). ★ Adult and young belugas engage in similar types of play, but the frequency with which belugas play with objects, the actions used during those object play bouts, and the type of materials the objects consist of have not been examined in detail (Hill & Ramirez, 2014). ★ The purpose of this study was to explore if object play exhibited by belugas varied in frequency of play bouts, actions, and materials used by young and …

Evaluation Of Prosthetic And Orthotic Technologies Using Ai Technology, Iris Reyna, Samerial Brown, Gary Guerra, Ed Khu

Posters - 2026

Individuals with lower limb prosthetics have amputations and abnormal limb motions, which poses a high risk of injury when doing everyday activities. In this field, evaluation of individuals' prosthetics are done through biomechanical analysis and gait analysis. This analysis is used to study human movement and evaluate the mobility and quality of life of amputee patients as well as determining the modifications, positioning, and alignment needed to ensure stability with prosthetic and orthotic technologies (Kumar & Bhowmik, 2024). Trunk flexion has importance to the study because of its impact on lower limb kinetics, kinematics, the increase of ground reaction forces, …

The Effects Of Cannabis Use On Physical Activity, Nitya Chiru, Brionna L. Smith, Karen L. Cropsey, Elizabeth K. Lee

Expo Student Presentations

2026 Spring Expo Poster Presentation

• Biological & Life Sciences

Improving Cannabis Sativa's Phytoremediation Capabilities Of Forever Chemicals Through Microbial Inoculations, Tyler S. Jolin

All NMU Master's Theses

Per- and polyfluoroalkyl substances (PFAS) are persistent environmental contaminants that pose ecological and human health risks due to their resistance to degradation and potential for bioaccumulation. Phytoremediation has emerged as a potential strategy for mitigating PFAS contamination, and plant-microbe interactions may influence contaminant uptake and transport within plant systems. These studies investigated microbial inoculation methods and examined whether Bacillus subtilis could influence the uptake and distribution of perfluorooctane sulfonate (PFOS) in hydroponically grown hemp (Cannabis sativa L.). Plant height and stem diameter growth rates and biomass accumulation were compared across treatments with and without PFOS exposure and microbial inoculation. PFOS …

Detection And Quantification Of Allergen Cross-Contact In Shared Frying Oil Using Targeted Mass Spectrometry, Francisca Asigri

Department of Food Science and Technology: Dissertations, Theses, and Student Research

Cow’s milk and egg allergies are prevalent IgE-mediated food allergies that pose significant public health concerns worldwide. Although strict avoidance remains the primary management strategy, unintended exposure can still occur through allergen cross-contact, particularly in commercial and industrial food operations that utilize shared frying oils. The objective of this study was to identify and quantify allergen transfer in shared frying oil and assess the robustness of existing targeted mass spectrometry methods (LC-MS/MS) for detecting milk and egg proteins in heated oil matrices.

Heated oil spikes were developed by incorporating non-fat dry milk (NFDM) and whole egg powder (WEP) into oil …

Regional Price Index 2025, Department Of Primary Industries And Regional Development, Western Australia

Statistics

The 2025 Regional Price Index (RPI) is the 12th State Government index comparing the cost of a common basket of goods and services in regional Western Australia to the Perth metropolitan area.

Small Jellyfish, Large Consequences: The Overlooked Predatory Role Of Hydromedusae In Subtropical Estuarine Ecosystems, Guilherme M. Von Montfort, Kelly R. Sutherland, Sean Colin, John H. Costello, Renato M. Nagata

Arts & Sciences Faculty Publications

Hydromedusae are often overlooked in pelagic trophic ecology compared to large scyphozoans. We investigated the diet, prey selectivity, ingestion rates, digestion times, and predation impacts of the native Liriope tetraphylla and non-indigenous species Cnidostoma fallax and Moerisia inkermanica in a subtropical estuary of the southwestern Atlantic. While all three species predominantly consumed copepods, L. tetraphylla exhibited the broadest diet and highest number of preys in gut content (up to 13). Digestion time for L. tetraphylla decreased significantly with increasing temperature, from 94 min at 18°C to 64 min at 28°C, with Q10 values showing that digestion rates roughly double with …

A Double-Edged Sword? Liana Wood Decomposes Faster Than Tree Wood, Denis Mburu Njoroge, Aphrodis Munyaneza, Juan Zuo, Gbadamassi G. O. Dossa, Douglas Schaefer, Rhett D. Harrison, Stefan A. Schnitzer, J. Hans C. Cornelissen

Biological Sciences Faculty Research and Publications

Lianas are increasing in many forests and show higher stem turnover rates and different chemical profiles compared with trees. However, liana deadwood decomposition dynamics have been overlooked. We redress this omission and hypothesize that liana wood decomposes faster than tree wood due to its larger vessels and higher nutrient content than trees, resulting in greater activity of both microbial and invertebrate decomposers. We tested this hypothesis in a common-garden decomposition experiment with deadwood of two size classes (2.5 and 4 cm diameter) belonging to 12 liana and 12 tree species in tropical China. Liana wood decomposed 28.6% faster than tree …

Comparative Efficacy Of Oral And Cloacal Administration Of Lactobacillus Probiotics And Postbiotics Against Campylobacter Jejuni Colonization In Broiler Chickens, Shreeya Sharma, Hosni Hassan, Khaled Abdelaziz

Publications

Campylobacter jejuni remains a major cause of foodborne illness worldwide, with poultry serving as the primary reservoir. In the absence of commercial vaccines or effective feed additives, probiotics and their byproducts (postbiotics) represent a promising and sustainable approach to reducing Campylobacter colonization in poultry. This study compared the efficacy of oral and cloacal administration of probiotic lactobacilli and their postbiotics in reducing Campylobacter colonization and modulating the cecal microbiome in broiler chickens. Day-old chicks were assigned to seven treatment groups that received either probiotics (live cells of four poultry-derived Lactobacillus strains: L. reuteri P43, L. acidophilus P42, L. animalis P38, …