Life Sciences Commons^™

Ultraconserved Elements Based Phylogeny Of The New Zealand Mite Harvester Genus Rakaia, Zade Alafranji

Biology Honors Projects

New Zealand is home to a remarkable number of endemic taxa, some of which existed on the archipelago before the breakup of Gondwana. The mite harvesters (suborder Cyphophthalmi), tiny arachnids which dwell in forest leaf litter and caves, are one such group. The mite harvester family Pettalidae exhibits a classic Gondwanan distribution, informative for describing ancient patterns of diversification. Within New Zealand, there are three genera of pettalids; our research focuses on the phylogeny of the most widespread and diverse of these: Rakaia. Through phylogenetic analysis, we provide a window into patterns of ancient diversification and infer historical biogeographic trends. …

Evaluating The Effect Of Garden-Based Education On Young Learners’ Preferences For And Willingness To Try Healthy Food, Sierra Gregory

Agricultural Economics and Agribusiness Undergraduate Honors Theses

Childhood obesity in American children has tripled in the last 20 years, and 85% of current healthcare spending is linked to diet-related diseases. The consumption of highly processed foods is linked to these trends and makes up more than half of an average American youths’ diet. Reducing the consumption of highly processed foods in children’s diets can be addressed, in part, by addressing childhood neophobia (willingness to try new foods) associated with whole foods like fruits and vegetables. Influence over behavioral areas such as nutrition and in early childhood is essential to long-term sustained health, and garden-based interventions shows promise …

Use Of Space By Urban Loggerhead Shrikes (Lanius Ludovicianus) As A Window Into Habitat Suitability, Katie A. Maddox, Christopher E. Hill

Biology

Wild animals in urban environments face new challenges that may change how they use space and, at the same time, how they use space provides clues to suitability of habitat: bird territories in desirable areas tend to be smaller and populations denser. Loggerhead Shrikes (Lanius ludovicianus), historically associated with shortgrass habitats such as pasture and shrub steppe, occur widely in urban areas of the southeastern United States. For a complete picture of shrike use of space in urban spaces, we present three measures for a population inhabiting urban areas of Horry County, South Carolina: population density, home range size, and …

West Coast Rock Lobster Resource Harvest Strategy, Department Of Primary Industries And Regional Development, Western Australia

Fisheries Management Papers

Harvest strategies for Western Australia’s (WA) aquatic resources are formal documents developed by the Department of Primary Industries and Regional Development (DPIRD, the Department) to support decision-making processes that ensure the outcomes are consistent with the principles of Ecologically Sustainable Development (ESD; Fletcher 2002a) and Ecosystem Based Fisheries Management (EBFM; Fletcher et al. 2012). Harvest strategies are a key component of all contemporary fishery management systems and a requirement for certification under the Marine Stewardship Council (MSC). The objectives of ESD are reflected in the objectives of the Fish Resources Management Act 1994 (FRMA) and the Aquatic Resources Management Act …

Kentucky Warbler (Vol. 100, No. 2, Department Of Library Special Collections

The Kentucky Warbler

No abstract provided.

The Casnr L.I.N.K.S. Newsletter: Learning Innovation Network For K-12 Schools, Volume 3, Edition 5, May 2024, Bailey Feit, Tammy Mittelstet

CASNR L.I.N.K.S. Newsletter

The purpose of this L.I.N.K.S. newsletter is to provide a monthly update of opportunities and resources for K-12 schools to connect with the University of Nebraska's CASNR Food, Energy, Water, and Societal Systems (FEWS²) programs and partners.

Included in this edition:

Upcoming events

2024 Discovery Days + Farmers Market

Summer Discovery Day camp, Morrill Hall

June 9-14 Big Red Camps-East Campus

June 13-Wheat Variety Field Day-High Plains Lab-Sydney, NE

July 8-12 NAYI Conference-East Campus

July 16-18-SSI-Lincoln/North Platte

August 6-Forage Field Day-Haskell Ag Lab- Concord, NE

August 7-Family Field Day-Haskell Ab Lab- Concord, NE

August 13 - Building Connections Among Nitrogen …

Isolation Of Aged Mouse Primary Microglia As A Model System For Alzheimer’S Disease Research, Michael Landis

Biology Honors Papers

Microglia and their role as the immune cells of the central nervous system are an emerging area of interest within Alzheimer’s research, particularly as they have shown in a benevolent and malevolent cellular context. Models of Alzheimer’s disease are very light in studying microglia, so in this study a model of microglia isolated from aged mice is established in order to study the phagocytic activity and protein expression of microglia in response to Amyloid Beta. The cells were isolated from aged mice and cultured before being used to confirm cellular identity, as well as to measure phagocytic activity. This study …

Easter Island's Painkiller: How A Soil Bacteria Could Relieve Chronic Pain, Marko Krtinic

Scientific Kenyon: The Neuroscience Edition

No abstract provided.

Grey Relational Analysis And Canonical Correlation Analysis Of Air Pollution In Three Kentucky Counties, Sarah Hartman

Masters Theses & Specialist Projects

Air pollution is a crucial factor that affects both the environment and public health. Various methods are available for assessing air quality and pollution levels, such as regression models, principal component analysis, and factor analysis tools. However, some of these methods present issues in multicollinearity and the nature of collected data. It is important to recognize that air pollution data is often uncertain, incomplete, and contains limited valid data points. Weather conditions and economic activities are also factors that can affect air pollution. With growing communities in Kentucky (KY), it is essential to address these factors as the state has …

Cannabidiol (Cbd) And Resistance Training: Does Cbd Attenuate Acute Pain?, Guillermo Pacheco

Masters Theses & Specialist Projects

INTRODUCTION: Resistance training (RT) is an advantageous form of physical activity for health and performance benefits; these benefits are maximized when done strenuously. However, strenuous RT can induce acute inflammatory pain which can lead to delayed-onset muscle soreness (DOMS). Common analgesics like non-steroidal anti-inflammatory drugs (NSAIDs) can block protein synthesis, so other alternatives are needed for exercise and athletic communities to maintain physiological adaptations. Cannabidiol (CBD) is a non-psychotropic cannabinoid with purported anti-inflammatory, anti-oxidative, and analgesic properties. One of the main reasons for the use of CBD in exercise is pain alleviation; however, research in humans is limited. Therefore, the …

Development Of An Enhanced Sampling Workflow To Accelerate Molecular Docking With Sparse Biophysical Information, Zachary Stichter

Masters Theses & Specialist Projects

Rapid docking of flexible biological macromolecules remains a significant open challenge in protein structure determination. While rigid docking is relatively simple with toolkits such as TagDock, a key obstacle to rapid flexible docking is the complexity and roughness of the free energy surface associated with protein conformational motion (often termed the many-minima problem), meaning conventional molecular dynamics methods do not effectively sample protein conformations near the interaction complex in accessible timescales. Methods such as metadynamics and replica exchange molecular dynamics exist to ameliorate this obstacle, yet these methods use nonphysical biases or random swaps to enhance sampling. In contrast, high …

The Effect Of Mindfulness Training On Muscular Endurance Exercise Performance, Mindfulness, And Mental Toughness, Donte Mcgee

Masters Theses & Specialist Projects

INTRODUCTION: Mindfulness training is a method of mental training becoming increasingly popular and has been positively associated with mental toughness, which may be valuable in highly fatiguing and stressful activities, like endurance exercise. Mindfulness training has resulted in increased endurance performance, but limited literature exists on a similar modality, muscular endurance exercise. The purpose of this study is to examine the effect of an acute bout of mindfulness meditation on muscular endurance performance, mindfulness, and mental toughness. METHODS: Participants (n=24) completed two sessions, a week apart, of three planks until fatigue, with one-minute rest intervals. Immediately following each plank, RPE …

Synthesis Of Gold Nanoparticles Via Pulsed Liquid Ablation For Use In The Photodynamic Therapy Of Bacteria, Justice Ben Yosef

Masters Theses & Specialist Projects

With the ever-increasing threat of antibiotic resistant bacteria, alternative treatment methods have been developed including photodynamic therapy (PDT). Within the PDT process, photosensitizers are used to generate reactive oxygen species (ROS) and facilitate the cell termination process. This work lays the conceptual foundation for the functionalization of the photosensitizer methylene blue (MB) with gold nanoparticles (AuNPs) and INF-55 as a potential inhibitor of the AcrAB-TolC efflux pump to enhance the effectivity of the PDT process.

AuNPs were synthesized using pulsed laser ablation in an aqueous citrate solution. Both nanosecond and picosecond pulse durations, as well as both 532 nm and …

Assessing Population Size And Survival Rate Of Pelophylax Bedriagae Caralitanus, In A Well-Protected Nature Park In Türkiye, Ayfer Şirin, Akın Kiraç, Gürçay Kıvanç Akyildiz, Eyup Başkale

Turkish Journal of Zoology

Estimating population trends provides valuable information for conservation biologists. Although there are many methods for estimating demographic rates, capture-mark-recapture (CMR) methods are known to be the most realistic method that can provide detailed data on individuals and populations, including the achievement of conservation goals. This study focused on determining the population trend of Pelophylax bedriagae caralitanus, Beyşehir frog using the CMR method in a protected area during the 2011 - 2019 breeding seasons. Our CMR data led to the selection of a model-considering constant survival rates, capture/recapture probabilities, and year-specific immigration/emigration patterns [Φ(··) y'(t) y''(t) p(··) = c(··) N(t)]-as the …

Random-Effects Substitution Models For Phylogenetics Via Scalable Gradient Approximations, A. F. Magee, A. J. Holbrook, J. E. Pekar, Itzue W. Caviedes-Solis, F. A. Matsen Iv, G. Baele, J. O. Wertheim, X. Ji, P. Lemey, M. A. Suchard

Biology Faculty Works

Phylogenetic and discrete-trait evolutionary inference depend heavily on an appropriate characterization of the underlying character substitution process. In this paper, we present random-effects substitution models that extend common continuous-time Markov chain models into a richer class of processes capable of capturing a wider variety of substitution dynamics. As these random-effects substitution models often require many more parameters than their usual counterparts, inference can be both statistically and computationally challenging. Thus, we also propose an efficient approach to compute an approximation to the gradient of the data likelihood with respect to all unknown substitution model parameters. We demonstrate that this approximate …

How Neurobehavior And Brain Development In Alternative Whole-Organism Models Can Contribute To Prediction Of Developmental Neurotoxicity, Eva-Maria S. Collins, E. V. S. Hessel, S. Hughes

Biology Faculty Works

No abstract provided.

Evaluation Of The Efficiency Of Muscle-Specific Promoters To Express Non-Endogenous Proteins In Skeletal Muscle, Gabrielle Bulliard, Made Harumi Padmaswari, Christopher E. Nelson

Biomedical Engineering Undergraduate Honors Theses

Gene therapies are emerging as powerful tools for treating genetic diseases and cancers, offering the potential for a permanent cure. Hemophilia B, affecting approximately 6,000 men in the U.S., results from a deficiency in coagulation factor IX protein (FIX), which is crucial for blood clotting. A substantial portion of patients, over 40%, suffer from severe hemophilia B, experiencing spontaneous, prolonged bleeding. Current prophylactic treatments involve frequent coagulation factor infusions, yet a curative approach would alleviate this burden. Gene editing technologies like CRISPR-Cas systems show promise for correcting genetic mutations, but the diverse nature of factor IX gene (F9) …

Navigating Challenges For Locally Produced Food, Paul Cook

SACAD: Scholarly Activities

There is much interest in locally produced food and the benefits it can have on communities across the state of Kansas. By interviewing city managers, we have identified some of the unique factors and challenges that city officials face when considering their community’s local food systems. Through interview and survey data, we sensed that there is a desire for more local food in communities but lack of resources, lack of policies and the nature of large commodity agriculture in Kansas appear as challenges. Ad-hoc groups coming from schools, churches, and committees at the county level make up the majority of …

From Cells To Clinics- The Role Of College Biology Education In Shaping Future Physician Assistants, Monica Manley

Honors Theses

This thesis provides a personal reflection on translating concepts and techniques learned in multiple biology courses (i.e. microbiology, neuroscience, comparative physiology, and genetics) in to clinical practice as an intern in the emergency room of a hospital. Each selected concept contains a description followed by an example of how this knowledge relates to a specified duty of a physician assistant with in an emergency medical setting.

Relationships, Species Boundaries, And Speciation Of Piper Section Enckea, Cara Jean Hastings

Boise State University Theses and Dissertations

Species are fundamental biological units but defining what constitutes a species has been debated by biologists, philosophers, and other scholars. Our concept of what constitutes a species has evolved over time, reflecting progress and advances in technology and types of data available as well as increased understanding of the complexity of the speciation process. To understand how extant species evolved, it is useful to evaluate their relationships using molecular data in a phylogenetic framework. By pairing phylogenetic data with other types of data including morphological and fossil data as well as topographical and climatic history, we can gain understanding of …

Perceptions Of School-Based Agricultural Education Teachers Toward Promoting Agricultural Education Teaching As A Career, Emmanuel Kwadwo Sekyere

Graduate Theses and Dissertations

School-based agricultural education has experienced a scarcity of qualified teachers over the years. To reduce the prevalence of school-based agricultural teacher shortages, research has led to the adoption of several approaches in schools across the country. The purpose of this study was to examine the perceptions of school-based agricultural education teachers toward promoting agricultural teaching as a career. The theoretical framework for this research was based on the Theory of Planned Behavior. The research objectives were to determine the perceived importance of career promotion activities, the frequency of career promotion activities, the perceived job satisfaction of SBAE teachers, and the …

Turfgrass Soil Surfactants: Examining Active Ingredients, Application Strategies, And The Structure–Function Relationship In Sand-Based Putting Greens, Daniel O'Brien

Graduate Theses and Dissertations

Soil surfactants, commonly referred to as wetting agents, are a leading water management strategy for golf courses. Non-ionic block copolymers are the most common type of turfgrass soil surfactant. However, differences in the registration process and labeling requirements allow soil surfactants to enter the marketplace accompanied by far-less data compared to other products used on golf courses. This has led to considerable confusion among golf course superintendents. Three primary sources of confusion are: (i) the widely-used marketing terminology of “penetrants” and “retainers” to classify wetting agents; (ii) active ingredients which in some cases are not disclosed at all; and (iii) …

Tremblings, May 2024, Western Aspen Alliance

Tremblings

Climate change insurance: planting aspen seedlings as fuel breaks

Catherine Schloegel, Program Manager, The Nature Conservancy, Boulder, Colorado

Jordan Mead, Resource Specialist, Summit County Open Space and Trails Department, Frisco, Colorado

As climate impacts accelerate, mountain communities living near forested areas across the West will be at increasing risk of more frequent wildfires. To protect neighborhoods from high-severity wildfires, land managers frequently clear strips of forest around homes and roads. We examined the potential to plant true aspen seedlings in these fuel breaks to increase habitat diversity while maintaining a reduced risk of wildfire. Historically, aspen has acted as a …

Evaluating The Effects Of Acute Beetroot Supplementation On Oxygen Consumption And Exercise Performance During Submaximal Exercise: A Systematic Review, Madeline L. Kline

2024 Spring Honors Capstone Projects - Archive

Beetroot juice has become a very popular supplement to try to improve cardiorespiratory fitness. Beetroot juice contains nitrates which is converted in body into nitric oxide, a vasodilator. This allows for more blood flow to exercising muscles. Many studies have been conducted to see if beetroot supplementation will affect performance and cardiorespiratory parameters during different types of exercise. However, much of the literature has conflicting results. For this study, seven articles were examined to determine if acute beetroot supplementation will affect oxygen consumption and exercise performance of active individuals during submaximal exercise. Of these studies, most of them did see …

Improving Breast Cancer Patients’ Disclosure Practices In The Workplace Through An Elearning Intervention- An Analysis On Interview Data From An Existing Intervention, Daniela E. Loya-Rivera

2024 Spring Honors Capstone Projects - Archive

Breast cancer diagnoses are rising yearly in the United States; these diagnoses among the 18–45-year-old age group means that many employed women are affected. Previous breast cancer disclosure interventions identify challenges faced following the diagnosis, as well as common themes and aspects in the breast cancer disclosure process in the workplace, however few have approached the process holistically. A pre-existing study conducted by faculty researchers at the University of Texas at Arlington originally planned to examine how individuals with breast cancer perceived the feasibility and acceptability of a theory-driven eLearning intervention on disclosure at work. The focus of this study …

Analyzing The Effects Of Sex-Biased Gene Expression On Dosage Compensation: An Exploratory Investigation Of Gene Expression Differences In Tribolium Leg Tissue, Preston Q. Truong

2024 Spring Honors Capstone Projects - Archive

The XX/XY sex chromosome system governs the sex determination of many organisms, where female individuals typically possess the XX sex chromosome pair and male individuals possess the XY pair. However, in some species, the Y chromosome is degraded due to reduced recombination and genetic processes that results in the loss of gene content. Dosage compensation (DC) mechanisms evolve to counteract the significant loss of one copy of genes and serves to maintain the level of gene expression before the loss of one copy of genes. This study will explore how sex-biased gene expression may affect DC evolution by observing the …

The Implementation And Effect Of An Guided Inquiry Based Lab Within An Introductory Lab, Gwendelyn Tran

2024 Spring Honors Capstone Projects - Archive

Microbiology lab is a foundational course within microbiology, biology, and nursing students’ education at many colleges. Overall, while microbiology lab pedagogy within upper level courses has shifted from a cookbook style lab to favor more inquiry based labs, there is a lack of introductory level microbiology inquiry based labs. This study aims to both introduce an easily adaptable one week guided inquiry based lab to an introductory microbiology lab curriculum and assess the effects of this pedagogy change on the students. To analyze the impact of this shift, student attitude and success within UT Arlington’s undergraduate microbiology labs were assessed …

The Effects Of Water Submersion On Skeletal Muscle Activation, Fatigue, And Whole-Body Gas Exchange, Caroline Griffin, Robert J. Shute

Honors Projects

THE EFFECTS OF WATER SUBMERSION ON SKELETAL MUSCLE ACTIVATION, FATIGUE, AND WHOLE-BODY GAS EXCHANGE

C.C. Griffin. Bridgewater College, Bridgewater, VA.

Email: [email protected]

Fatigue of skeletal muscle can be affected by multiple environmental elements. Fatigue threshold can be measured by VO2 max on a cycle ergometer combined with the use of a metabolic cart and Electromyography (EMG) measurements. PURPOSE: The purpose of this experiment is to determine if water submersion affects skeletal muscle activation, fatigue, and whole-body gas exchange. METHODS: Three participants were recruited to participate in a cold and no temperature trial. Participants arrived and baseline vitals and measurements were …

Phenotypic Plasticity In Pigmentation: Investigating Coloration Patterns In Anablepsoides Hartii Population Responses To Environmental Variation, Jasdeep Kaur

2024 Spring Honors Capstone Projects - Archive

In this study, we investigated the color-changing capabilities of Trinidadian killifish, Anablepsoides hartii, through exposure to varied color conditions over defined periods of time. Our experiment aims to understand adaptive responses when killifish are subjected to different color backgrounds, exploring their mechanisms to change color. By subjecting the species to different environmental color variations, we sought to discern color change patterns, which could indicate adaptive responses related to camouflage, stress, behavior clues, and physiological adjustments. Carefully controlling environmental factors, we monitored and documented the fishes’ color changes, aiming to provide insights into the interplay between fish’s developmental plasticity and its …

Annual Pasture Quantity And Quality In South West Western Australia, Department Of Primary Industries And Regional Development, Western Australia

Animal production and livestock factsheets

The productivity of sheep is largely governed by the amount of pasture they eat and this is influenced by the quantity of the pasture on offer and its quality. Assessing pasture quantity and quality throughout the growing season gives managers the information they need to manage animal performance and pasture condition.

The Department of Primary Industries and Regional Development provides this information for farmers to help improve the productivity and profitability of the livestock industry in Western Australia.