Life Sciences Commons^™

Impact Of Age On Pharmacogenomics And Treatment Outcomes Of B-Cell Acute Lymphoblastic Leukemia, Satoshi Yoshimura, Zhenhua Li, Yoshihiro Gocho, Wenjian Yang, Kristine R Crews, Kathryn G Roberts, Mary V Relling, Jiyang Yu, Allen E J Yeoh, Mignon L Loh, Caner Saygin, Mark R Litzow, Sima Jeha, Seth E Karol, Hiroto Inaba, Ching-Hon Pui, Marina Konopleva, Nitin Jain, Wendy Stock, Elisabeth Paietta, Elias Jabbour, Steven M Kornblau, William E Evans, Jun J Yang

Faculty, Staff and Student Publications

Purpose: Acute lymphoblastic leukemia (ALL) can occur across all age groups, with a strikingly higher cure rate in children compared with adults. However, the pharmacological basis of age-related differences in ALL treatment response remains unclear.

Methods: Studying 767 children and 309 adults with newly diagnosed B-cell ALL enrolled on frontline trials at St Jude Children's Research Hospital, MD Anderson Cancer Center, the Alliance for Clinical Trials in Oncology, and the ECOG-ACRIN Cancer Research Group, we determined the ex vivo sensitivity of leukemia cells to 21 drugs. Twenty-three ALL molecular subtypes were identified using RNA sequencing. We systematically characterized the associations …

Curating And Validating Universally Applicable Primers For Efficient Its2-Based Dna Barcoding Across Plant Taxa, Ajay R Bhat, Subrahmanya Hegde, Supriya S Kammar, Mb Muthamma, Gaurav Mudgal, Prashanth Babu H, Rajulu Charukesi, Thotegowdanapalya C Mohan

International Journal of Health and Allied Sciences

Abstract: Rapid and accurate identification of plant species increasingly seeks to employ molecular techniques. The ITS2 region is highly regarded in DNA barcoding due to its short length and ease of sequencing, making it an ideal candidate for species identification

Epitope Identification Of Rabies Virus Nucleoprotein Using Immunoinformatics Approach, Kavitha G. Manjunatha, Chandrahasa Chethana, Akhila D. Sannejal, Mohammad Shueb, Devananda Devegowda, Shashanka K. Prasad, Deepak S. Pinto, Shrikrishna Isloor

International Journal of Health and Allied Sciences

Abstract

Background

Rabies is a deadly and preventable disease. The nucleoprotein of rabies virus has been found to have group-specific antigenic determinants. The rabies virus nucleoprotein can shield dogs and mice from the lethal infection. Early diagnosis of rabies is crucial for the prevention of rabies.

Methods

In this study, B-cell epitopes of the nucleoprotein gene of the rabies virus were identified, and the characteristics of the epitopes were analyzed using various bioinformatics tools, such as the immune epitope database's Bepipred Major Histocompatibility Complex II (IEDB MHC II) prediction tool, NetCTL 1.2, Vaxijen v20, AllerTOP v2.0 server.

Results

Fourteen epitopes …

Acute Effects Of Serial And Integrated Concurrent Exercise On Circulating Micrornas -126 And -222 In Sedentary Adults, Matthew F. Brisebois, Ryan A. Gordon, Emily L. Zumbro, Matthew L. Sokoloski, Anthony A. Duplanty, Shanil Juma, Brandon R. Rigby

International Journal of Exercise Science

International Journal of Exercise Science 17(2): 1444-1460, 2024. The purpose of this study was to compare changes in circulating microRNAs -126 (c-miR-126) and -222 (c-miR-222) following acute serial concurrent exercise (SCE) and integrated concurrent exercise (ICE) sessions among young, sedentary adults. Ten males and 9 females completed the study procedures. For SCE, participants performed resistance exercise (RE) followed by aerobic exercise (AE), without mixing the two. For ICE, participants performed a brief bout of AE before each set of RE. Blood was collected before, immediately after (IP), and 1 h (1HR) after each exercise session. Expression of c-miR-126 significantly increased …

The Economics Of The ‘Buy Local’ Trend, Susweta Ray, Konstantinos Giannakas

Cornhusker Economics

The results of our study underline the significance of the explicit consideration of consumer and producer heterogeneity and the size and type of the locality when analyzing the market and welfare impacts of the ‘Buy Local’ trend. In addition to providing important new insights on the market and welfare impacts of the ‘Buy Local’ trend, our analysis can also provide a valuable theoretical grounding for empirical studies aimed at quantifying the economic impacts of the trend in different food product markets as well as the impact of current and emerging policies affecting the markets for local foods.

Oregon State Rank Assessment For Catlow Tui Chub (Siphateles Bicolor Ssp. 2), Jesse Laney

Institute for Natural Resources Publications

Oregon state conservation status assessment for Catlow tui chub (Siphateles bicolor ssp. 2) using NatureServe methodology, 2024.

Oregon State Rank Assessment For Sheldon Tui Chub (Siphateles Bicolor Eurysoma), Eleanor P. Gaines

Institute for Natural Resources Publications

Oregon state conservation status assessment for Sheldon tui chub (Siphateles bicolor eurysoma) using NatureServe methodology, 2024.

Investigation Of The Acaricidal Efficacy, Tolerance And Residue Levels Of Thymol-Containing Gelatin-Based Hydrogel Developed For Varroosis Control, Onur Demi̇r, Ali̇ Bi̇lgi̇li̇, Mehli̇ka Pulat

Turkish Journal of Veterinary & Animal Sciences

The aim of this study was to investigate the acaricidal efficacy, tolerability of the target species and residue levels of a thymol-containing gelatin-based hydrogel developed as a controlled release system for varroosis control. The study was carried out on naturally infested honey bee colonies and compared with those of the negative control and positive control groups. The acaricidal efficacy (%) of the negative control, positive control and hydrogel was 21.93 ± 2.87, 81.09 ± 2.30 and 70.32 ± 2.05, respectively. For the tolerability controls, the average number of dead bees per colony was determined to be 60.80 ± 8.01, 297.40 …

Effects Of Supplementing Rumen-Protected Methionine And Lysine On Milk Yield And Milk Composition In Dairy Cows, Imene Kerbache, Samir Souames, Amel Haddoum, Nedjoua Lakhdara, Nassim Moula

Turkish Journal of Veterinary & Animal Sciences

The use of “health-food additives” has gained significant attention within the dairy sector, with a focus on enhancing the nutritional intake of dairy cows to improve their productivity and reproductive performance. This study aims at examining the impact of rumen-protected methionine (Met) and lysine (Lys) supplementation on production and reproductive parameters in a sample of 100 dairy cows, comprising 32 primiparous and 68 multiparous cows with an average of 5.24±2.31 years. The cows’ average milk production was determined to be 24.9±7.40 kg/day. The cows were divided into two groups, one receiving Met/Lys supplementation and the other serving as a control …

An Innovative Approach: Introducing Novel Sheep Paternity Testing Panels, Onur Yilmaz, İbrahi̇m Cemal, Nezi̇h Ata, Orhan Karaca

Turkish Journal of Veterinary & Animal Sciences

The aim of this research was to create various microsatellite paternity test panels that are efficient, cost-effective, simple, and accessible for paternity assessments within the Eşme sheep breed in Western Anatolia. The study included 2432 animals from sixteen farms, consisting of 147 rams and 2285 lambs. 17 microsatellite markers were utilized in the study to develop these test panels, prioritizing markers with high polymorphic information content (PIC) and probability of exclusion (PE) values. By combining markers with varying PIC and PE values, 16 distinct paternity test panels were established. The study revealed mean values for various parameters of the microsatellites …

Monitoring Cow Behavior Based On Lying, Standing, Eating, And Ruminating Recognition Using Yolov8, Ali Saifudin, Sri Pantja Madyawati, Imam Yuadi, Rimayanti Rimayanti, Imam Mustofa, Riries Rulaningtyas, Teddy Surya Gunawan, Adnan Rahmat Anom Besari

Turkish Journal of Veterinary & Animal Sciences

Cow behavior is a crucial indicator for monitoring health, reproductive status, and welfare in livestock management. However, methods that rely on wearable devices often face significant challenges, including high costs, maintenance difficulties, and potential impacts on animal welfare. To address these limitations, this study explored the potential of using YOLOv8, a cutting-edge computer vision model, for non-invasive monitoring of cow behavior. The research methodology involved four key steps: data collection, preliminary data processing, model training, and validation. The findings revealed that YOLOv8 is capable of accurately detecting and localizing key cow behaviors—lying, standing, eating, and ruminating—achieving a mean average precision …

Characterizing The Influence Of Metabolism On Steady State Water Exchange In Yeast As A Potential Mri Diagnostic Biomarker, Samantha Mumford

Dissertations and Theses

Under conditions of ionic equilibrium with the environment a cell maintains a constant volume yet rapidly exchanges water molecules with the extracellular space. The rate constant for steady state water efflux, k_io, can be measured using contrast enhanced magnetic resonance (CE-MR). The active water cycling (AWC) hypothesis is puts forward that k_io is primarily influenced by cellular ATP levels and H⁺ ATPase activity at the cell membrane. Due to the correlation between k_io and ATP levels, k_io is thought to be a probable MRI biomarker for metabolic diseases such as cancer. Yet, the molecular …

Molecular And Clinical Features Of Pancreatic Acinar Cell Carcinoma: A Single-Institution Case Series, Ashwathy Balachandran Pillai, Mahmoud Yousef, Abdelrahman Yousef, Kristin D Alfaro-Munoz, Brandon G Smaglo, Robert A Wolff, Mark W Hurd, Anirban Maitra, Huamin Wang, Matthew Harold G Katz, Laura R Prakash, Ching-Wei D Tzeng, Rebecca Snyder, Luca F Castelnovo, Anthony Chen, Andrey Kravets, Kseniia Kudriavtseva, Artem Tarasov, Kirill Kryukov, Haoqiang Ying, John Paul Shen, Dan Zhao

Faculty, Staff and Student Publications

Objectives: Acinar cell carcinoma (ACC) accounts for about 1% of pancreatic cancers. The molecular and clinical features of ACC are less characterized than those of pancreatic ductal adenocarcinoma. Methods: We retrospectively evaluated the clinical and molecular features of ACC patients who underwent germline and/or somatic molecular testing at The University of Texas MD Anderson Cancer Center from 2008 to 2022 and two cases from 2023-2024 who underwent RNA and TME analysis by Boston Gene. Patient information was extracted from our institutional database with the approval of the Institutional Review Board. Results: We identified 16 patients with available molecular testing …

Phase I/Ii Study Of Bms-986156 With Ipilimumab Or Nivolumab With Or Without Stereotactic Ablative Radiotherapy In Patients With Advanced Solid Malignancies, Joe Y Chang, Xinyan Xu, Girish S Shroff, Nathan I Comeaux, Wei Li, Daniel D Karp, Vivek Verma, Aileen Chen, James Welsh, David S Hong

Faculty, Staff and Student Publications

Background: BMS-986156 is an agonist of the glucocorticoid-induced tumor necrosis factor receptor (TNFR)-related protein (GITR) and promotes increased effector T-cell activation. Combined anti-GITR, anti-programmed death-1, anti-cytotoxic T-lymphocyte-associated protein 4 antibodies and radiotherapy improve tumor control in preclinical studies. Herein we describe the results of the safety and efficacy of BMS-986156+ipilimumab or nivolumab with/without stereotactic ablative radiotherapy (SABR) in patients with advanced solid cancers (NCT04021043).

Methods: This open-label, multigroup, single-center phase I/II study enrolled patients with histologically-confirmed stage IV solid cancers resistant to standard treatments. Group 1 (G1, n=20) received four cycles of ipilimumab (3 mg/kg) plus BMS-986156 (30 …

A Review Of Biomass-Based Natural Coagulants For Water Pollution Remediation: Impact Of Properties And Coagulation Operational Parameters, Nur Faizzah Husna Mohammad Ali, Megat Ahmad Kamal Megat Hanafiah, Sabiha Hanim Saleh, Mohd Tajudin Mohd Ali, Shariff Ibrahim

AUIQ Complementary Biological System

The rapid growth of cities, industries, and population has made tackling water scarcity increasingly challenging as the global demand for clean drinking water continues to rise. Consequently, extensive research in water and wastewater treatment, specifically focusing on the coagulation process, has ensued. Coagulation plays a critical role in water treatment, and its effectiveness depends on the type of coagulant used. However, the widespread use of chemical coagulants raises concerns for the environment and public health. Consequently, there has been growing interest in exploring natural alternatives derived from plants and animals. This review examines how the properties of natural coagulants, as …

Mutations And Antibiotic Resistance In Mycobacterium Tuberculosis, Ryan M. Johnson, Bodhi Brady, Nicklaus Busse, Connor Beckman, Hunter Gloden, Joseph Glasrud, Zachary Smith, Hari P. Nepal, Madhav P. Nepal

Life Science Reports

Mycobacterium tuberculosis (MTB) is a bacterium known to target, infect, and destroy lung cells as well as connective tissues within the body. This bacterium is prevalent worldwide and has infected over a quarter of the current world population, becoming one of the most successful pathogens in history. Due to its extreme transmission rates as an airborne pathogen, MTB strains have been treated with antibiotics such as rifampicin and isoniazid, which inhibit bacterial infection in the human body. These first-round drugs remained as successful mechanisms for slowing and killing the pathogen, notably through rifampicin's inhibition of RNA-polymerase and isoniazid’s ability to …

Prescription Adherence Rates Across Medication Categories, Makenzie Stagner, Allie Weber, Madhav P. Nepal, Hari P. Nepal

Life Science Reports

Prescription adherence is a major public health challenge, as non-adherence to medication instructions can lead to poorer health outcomes and higher healthcare costs. Although prescription adherence is crucial for managing patient compliance and health outcomes, adherence rates differ greatly between medication types. The main objectives of this study were to determine prescription adherence rates across six medication types (antibiotic, cardiac, chronic health, pediatric, and psychiatric) and identify sources of variation. We searched PubMed and Web of Science databases for relevant published articles. Previous research data were selected related to prescription adherences and compliance rates were included in our analysis. Results …

Carrying The Weight Of Pregnancy Anxiety, Danielle Yates

Family Perspectives

No abstract provided.

Fostering Healthy Sexuality In The Emerging Generation: Reminders For Latter-Day Saints, Melina Myers

Family Perspectives

No abstract provided.

Family Meals: Expectation Vs. Reality, Lindsey Hair

Family Perspectives

No abstract provided.

How Parent-Child Attachment May Influence Relational Self-Efficacy In Adults, Rachel Abraham

Family Perspectives

No abstract provided.

Dollars And Daddy Issues: The Effect Of Parental Gambling On Children’S Attachment Style And Relational Outcomes, Mackenzie Pistritto

Family Perspectives

No abstract provided.

Viewing Adhd’S Impact On Children’S Social Development Through The Lens Of Peer Rejection, Bethany Sycamore

Family Perspectives

No abstract provided.

Crocodylian Diversity During The Early Eocene Climatic Optimum In The Golden Valley Formation Of North Dakota, U.S.A., Adam P. Cossette, David Tarailo

Biological Sciences Faculty Publications

Rich bone beds from the lower Eocene strata of the Golden Valley Formation of Stark County, North Dakota reveal a speciose sympatric crocodylian fauna. However, analyses demonstrate limited phylogenetic diversity among these co-occurring taxa, and of the four species known for the locality, three are alligatorids and one is a crocodyloid. Phylogenetic hypotheses recover Chrysochampsa mylnarskii as a late lived member of Brachychampsini—a stem-based clade including Brachychampsa montana and all alligatorids more closely related to it than to Caiman crocodilus or Alligator mississippiensis—and a new genus and species, Ahdeskatanka russlanddeutsche groups with species of Allognathosuchus. The crocodylians, partitioned by body …

Ai And Future-Making: Design, Biases, And Human-Plant Interactions, Maliheh Ghajargar

Art Faculty Articles and Research

Design researchers and practitioners are turning to generative AI (genAI) to support activities such as ideation and concept development in pursuit of preferred futures. At the same time, genAI is known to have biases, which prompts questions about how these biases might adversely affect design practices. In the domain of sustainable HCI, with its recent trends in human-nature interactions and more-than-human design, the question can be further refined into whether and how genAI biases might perpetuate anthropocentric biases that these practices are increasingly seeking to confront. In the present research, we conducted three workshops, focusing on genAI for human-plant interactions; …

"The Words We Do Not Yet Have." A Creative Inquiry Into Human-Plant Relationships, Maliheh Ghajargar

Art Faculty Articles and Research

Climate change, loss of plant biodiversity, and ocean pollution signal the drastic changes in our ecology that call us to attend to the needs of more than human forms of life on Earth. Sustainable design and HCI research are responding to this call by offering methods and approaches to design more sustainable products and systems and recently, more than human design is building momentum. This agenda seeks to reform traditional design processes by decentering the creative agency of the dominant socio-economical group of humans and foregrounding those of diverse Others. In this paper, I focus on plants as a nonhuman …

The Role Of Lymph-Adipose Crosstalk In Alcohol-Induced Perilymphatic Adipose Tissue Dysfunction, Kourtney D. Weaver, Liz Simon, Patricia E. Molina, Flavia Souza-Smith

School of Graduate Studies Faculty Publications

Chronic alcohol use leads to metabolic dysfunction in adipose tissue. The underlying mechanisms and the contribution of alcohol-induced adipose tissue dysfunction to systemic metabolic dysregulation are not well understood. In our previous studies, we found that chronic alcohol feeding induces mesenteric lymphatic leakage, perilymphatic adipose tissue (PLAT) inflammation, and local insulin resistance in rats. The goal of this study was to further explore the link between alcohol-induced lymphatic leakage and PLAT immunometabolic dysregulation, locally and systemically, using in vivo and ex vivo approaches. Male rats received a Lieber–DeCarli liquid diet, of which 36% of the calories were from alcohol, for …

Genetic Diversity Of Soybean Dwarf Virus In Two Regions Of Mainland Australia, Benjamin S. Congdon, Murray Sharman, Monica Kehoe

Biosecurity Research Articles

Soybean dwarf virus (SbDV; family Tombusviridae, genus Luteovirus, species Luteovirus glycinis) is an RNA plant virus that is transmitted solely by aphids in a persistent, circulative and non-propagative manner. SbDV causes significant losses in cultivated Fabaceae, especially in subterranean clover (Trifolium subterraneum) pastures of mainland Australia. SbDV isolates are classified into four phenotypically distinguishable strains: YP, YS, DP, and DS. Y and D strains differ primarily in their host range, and P and S strains in their primary vector species. Genetically, Y and D strains separate into two clades in every genomic region except for …

Unravelling The Impact Of Blood Metabolites, And Lifestyle Factors On Periodontal Disease Using Mendelian Randomization, Rhea Charles

USF Tampa Graduate Theses and Dissertations

Periodontal disease remains a global public health concern. Despite the availability of preventive and therapeutic strategies, the multifactorial nature of periodontitis complicates its understanding and management. Periodontal disease is associated with an increased risk of chronic conditions, including ischemic heart disease (IHD), gestational hypertension, respiratory diseases such as COPD and bronchitis, and various cancers, including kidney and pancreatic cancers. Moreover, individuals with diabetes, autoimmune diseases like lupus and Crohn’s disease, and osteoporosis are more likely to develop periodontitis. The ambiguity in the direction of causality between periodontal disease and its associated conditions poses challenges for effective treatment. Mendelian randomization offers …

Flagellar Motility Is Mutagenic, Souvik Bhattacharyya, Shelby Lopez, Abhyudai Singh, Rasika M Harshey

Faculty, Staff and Student Publications

Flagella are highly complex rotary molecular machines that enable bacteria to not only migrate to optimal environments but also to promote range expansion, competitiveness, virulence, and antibiotic survival. Flagellar motility is an energy-demanding process, where the sum of its production (biosynthesis) and operation (rotation) costs has been estimated to total ~10% of the entire energy budget of an