Life Sciences Commons^™

Immune Dynamics And B Cell Contributions To Neuroplasticity And Recovery After Stroke, Thomas A. Ujas

Theses and Dissertations--Neuroscience

This dissertation explores the dynamic interplay between the immune system and the brain across stroke and aging using clinical, post-mortem, and pre-clinical models. The immune system plays critical roles in shaping brain function, responding to injury, and mediating recovery. These studies aim to enhance our understanding of neuroimmune dynamics across spatial and temporal dimensions.

In the first part, we conducted longitudinal sampling of aneurysmal subarachnoid hemorrhage (aSAH) patients to track immune cell and cytokine changes at days 3, 5, 7, 10, and 14 post-stroke, with a focus on delayed cerebral ischemia (DCI), a common complication. We observed distinct temporal patterns, …

Investigating The Role Of Dynamic Signaling Of Nrg3-Erbb4 In The Prefrontal Cortex In Mediating Nicotine Withdrawal Phenotypes, Emily Prantzalos

Theses and Dissertations--Pharmacy

While several pharmacotherapies are currently available for nicotine use disorder (NUD), smoking cessation success rates remain below 10% each year. The molecular mechanisms underlying failed quit attempts continue to represent a critical gap in our knowledge. However, recent advances in understanding the genetic contributions to nicotine dependence offer a promising avenue for developing more effective cessation therapies. Prior research has identified genetic variation in Neuregulin 3 (Nrg3) and its cognate receptor ErbB4 as potential contributors to affective nicotine withdrawal (WD) phenotypes and cessation outcomes. Therefore, this dissertation aims to systematically investigate the region-specific, functional role of the Neuregulin Signaling Pathway …

Leveraging Transcriptomics And Behavior To Investigate Potential Neuronal And Glial Drivers Of Substance Use Disorder Endophenotypes, Jack V. Keady

Theses and Dissertations--Pharmacy

Over 54 million Americans needed substance use treatment in 2023. While there are many facets of substance use disorder, two major issues of interest are the negative reinforcing aspects of substances of abuse, manifesting in part as withdrawal symptomologies, and why a subset of people who use substances of abuse escalate to a use disorder. Nicotine exposure models were used to investigate the mechanisms of withdrawal endophenotypes, as smoking is the leading cause of preventable death in the United States, and a fentanyl self-administration model was used to probe individual differences in escalation phenotypes, as 80% of overdose deaths in …

The Impact Of Maternal Environmental Exposures On The Immune Landscape Of The Maternal-Fetal Interface, Heather E. True

Theses and Dissertations--Pharmacy

Maternal environmental exposures and inflammation are known to impact fetal development in utero as well as increase the risk for chronic diseases later in life. Therefore, it is essential that we understand how the maternal environment alters placental structure and immune function.

Therefore, we isolated fetal (chorionic villous) tissues from the placentas of healthy pregnant participants (control) and those with inflammatory conditions, including SARS-COV-2 infection, pregravid obesity, and opioid use disorder. Isolated placental leukocytes were subjected to a series of assays to uncover the phenotypic, functional, and transcriptional (single-cell RNA-sequencing) landscape of placental immune cells. Additional placental tissues were subjected …

Cell-Type Specific Apoe4 To Apoe2 ‘Switching’ In Astrocytes And Microglia Alters Alzheimer’S Disease Neuropathology, Lesley R. Golden

Theses and Dissertations--Physiology

Apolipoprotein E (APOE) is the strongest genetic risk factor for late-onset Alzheimer’s disease (LOAD). APOE exists in three common protein isoforms throughout the population: ApoE2 (E2), ApoE3 (E3), and ApoE4 (E4). While APOE allele frequencies and the degree of AD-associated risk vary across different ethnic groups, when compared to the ‘neutral’ and most common E3 allele, the E4 allele confers up to a 33-fold increase in Alzheimer’s Disease (AD) risk. Conversely, the neuroprotective E2 allele decreases AD risk by up to 67%. Here, we aimed to determine the therapeutic potential of cell-type specific APOE allele ‘switching’ and explore …

Causes And Consequences Of Reproductive Plasticity In The Seed Beetle, Callosobruchus Maculatus, Josiah P. Ritchey

Theses and Dissertations--Entomology

Competition for resources has direct effects on traits that can influence an individual’s reproductive success in competitive mating environments. When population density is high during development, competition for resources can reduce growth and body size at maturation, influencing resources available for reproduction. In this thesis, I investigate how the developmental environment affects plasticity in male reproductive traits, as well as the consequences of male reproductive plasticity on female reproductive behavior, in the seed beetle, Callosobruchus maculatus. My results show that increasing larval density causes male beetles to emerge small and transfer small ejaculates to females. However, small males transfer …

Dinotefuran Resistance In The German Cockroach (Blattella Germanica L.), Hannah F. Blevins

Theses and Dissertations--Entomology

German cockroaches (Blattella germanica L.) are one of the most prevalent and pervasive indoor pest species in the world. Infestations can lead to many negative impacts on humans, including sensitization to allergens, increase in asthmatic symptoms, mental health declines, and potentially, the spread of diseases. While insecticides remain the most effective and affordable option for German cockroach control, resistance to many commonly used insecticide active ingredients (AIs), such as pyrethroids, has been observed globally at high levels across different populations. Given such resistance to pyrethroids, inclusion of insecticides with alternative modes of action into insecticidal treatments could potentially improve cockroach …

Bed Bugs: Health Risks And Control, Simona Principato

Theses and Dissertations--Entomology

Bed bugs are blood-feeding hemipterans strongly associated with humans. Their detection in indoor environments, such as homes, hotels, trains, and public facilities, has increased gradually over the past 20 years. The exact cause of their resurgence is still unclear, but the increase of international travel and insecticide resistance are thought to have contributed to it.

Although bed bugs are not known to transmit diseases, the EPA, CDC, and USDA have classified them as a pest of significant public health concern, mainly due to the dermatitis that they can cause. Beyond the dermatological burden of the bites, other health implications often …

The Role Of Nutrition In Managing Honey Bee Viral Pathogen, Caroline Wylie Kane

Theses and Dissertations--Entomology

This study evaluated the impact of nutritional supplements on viral infections in honey bee colonies, focusing on Lake Sinai Virus 2 (LSV2), Deformed Wing Virus A (DWVA), and Deformed Wing Virus B (DWVB). I partnered with 32 hobbyist beekeepers across Kentucky, who volunteered 138 colonies for a month-long field study. Half of the colonies received weekly commercial supplements, while the other half served as controls. Viral titers were measured before and after the supplementation period using qPCR. Supplements did not significantly reduce viral titers for any of the three viruses, suggesting that short-term supplementation may not be effective in lowering …

Exportin 1 Is The Central Hub In Antiviral Defensive Mobilization Of Nuclear Factors And The Target Of Counter-Defence By Tombusviruses, Biao Sun Dr.

Theses and Dissertations--Plant Pathology

Positive-strand RNA viruses, such as coronaviruses and flaviviruses, are obligate parasites whose genomic RNAs function as mRNAs. These viruses infect a wide range of hosts-including plants, animals, and humans-resulting in significant economic losses and posing serious threats to public health. Due to the relatively simple structure of the genome of positive-strand RNA viruses, many host factors and physiological processes are co-opted to support virus infection and replication. In our previous studies, we identified numerous host factors and associated physiological processes involved in the replication of tombusviruses, a cytosolic-replicating model that includes tomato bushy stunt virus (TBSV) and carnation Italian ringspot …

Role Of Chemotype In Aggressiveness, Toxicity, And Competitive-Ness Of Fusarium Graminearum On Wheat, Simran Goyal

Theses and Dissertations--Plant Pathology

Fusarium Head Blight (FHB) of wheat, caused by the fungus Fusarium graminearum, is a devastating disease that led to epidemics in the U.S. during the 1990s, resulting in economic losses exceeding $2.6 billion. Typical symptoms include bleached spikelets and shriveled grains, often contaminated with trichothecene mycotoxins that make them unsafe for food or feed. FHB severity and mycotoxin production are influenced by a complex interplay between host genotype, environmental factors, and pathogen genotype. Integrated management practices that include the use of more resistant cultivars, crop rotation, and fungicide applications help to reduce disease incidence and severity. Disease forecasting models …

Gene Expression In Relation To Bone Fractures In Throughbred Racehorses, Anna M. Rauber-Ramos

Theses and Dissertations--Veterinary Science

Evidence that fractures in Thoroughbred racehorses are outcomes of chronic bone microdamage has led to extensive research into identifying horses at increased risk of fracture. This includes the use of biomarkers and messenger RNA (mRNA) as a measure of bone turnover. Previous research has found expression differences in horses with fractures compared to controls. Utilizing pre-race whole blood samples collected over an 18-month period from Thoroughbred racehorses in Southern California, RNA-sequencing was conducted on horses with bone fractures and race-matched controls to identify differences in gene expression. Focusing on third metacarpal (MC3) and proximal sesamoid bone (PSB) fractures, differentially expressed …

Avian Response To Legacy Coal Mine Reforestation In The Cumberland Plateau, Kentucky, Madoline J. Varias

Theses and Dissertations--Forestry and Natural Resources

Surface coal mining and reclamation processes alter the ecological characteristics of landscapes, which affects the presence and distribution of native wildlife. The Forestry Reclamation Approach (FRA) is a coal mine reclamation method that aims to establish native forests on surface mines and has been widely implemented across the Central Appalachian region. Avian response the FRA, in particular, is unknown in Kentucky and limited throughout Appalachia. Thus, the goal of this project was to assess the effects of the FRA on avian community occupancy, species richness, and abundance in the Cumberland Plateau of Kentucky. Point count surveys were conducted across three …

Predicting Patterns Of Species Presence In Eastern Kentucky Using Fine- And Broad-Scale Site-Species Relationships, Kyra L. Shrout

Theses and Dissertations--Forestry and Natural Resources

Understanding site-species relationships is integral to effective forest management, as landscape factors influence both the presence of mature trees and the regeneration of future trees. This study examined the influence of topographic, soil, and canopy variables on species presence at both fine (i.e., stand-level) and broad (i.e., forest-wide) scales within Robinson Forest, Kentucky. At the fine-scale, using vegetation data from permanent sampling plots, LiDAR-derived topographic data, and historical soils data, the relationships between the species of interest and the landscape variables within a single watershed were analyzed using conditional inference tree (CTree) models. Elevation and slope aspect were the most …

Impacts Of Utilizing Reverse Osmosis Concentrate On Mashing, Fermentation, And Water Use In Bourbon Whiskey Production, Ryan C. Sarhan

Theses and Dissertations--Biosystems and Agricultural Engineering

This thesis addresses the feasibility of reusing reverse osmosis concentrate (ROC) in the bourbon whiskey fermentation processes. Initial work compared laboratory-scale mashing and fermentation methods, demonstrating that simultaneous saccharification and fermentation reliably reflects industrial-scale processes, with lower complexity and process time. Building upon this, laboratory and distillery-scale experiments demonstrated that reusing ROC in the mashing and fermentation steps does not negatively impact ethanol yields. ROC produced by systems with a water softener was found to significantly increase mash rheology, suggesting a need for potential process adjustments. Softened ROC also altered the production of flavor-influencing volatile congeners. Under worst case conditions, …

Development Of Non-Destructive Methods For The Detection And Quantification Of Gluten Sources In Foods, Adewale Abiola Oloyede

Theses and Dissertations--Biosystems and Agricultural Engineering

Cross-contamination of food with gluten-rich grains such as wheat, barley, and rye remains a significant challenge in gluten-free food production, posing health risks to individuals with gluten-related disorders. Traditional detection methods are often time-consuming and labor-intensive, highlighting the need for rapid and reliable alternatives. This study investigates the use of hyperspectral imaging (HSI) combined with machine learning (ML) and deep learning (DL) techniques for the detection and quantification of gluten contamination in grain-based foods through three main approaches: (i) classification of gluten source contaminants in gluten-free flour, (ii) quantification of gluten content from wheat, rye, and barley flours, and …

Physical Ablative Methods And Cancer Cell Death: Implications For Immunity And Therapies, Alessandra Rossi, Claudia Muratori

Bioelectrics Publications

Surgery has traditionally been a cornerstone in cancer treatment, yet its feasibility can be limited by factors such as tumor location and patient health conditions. When surgery is not viable, thermal and pulsed electric field (PEF)-based ablation technologies offer valuable alternatives. Emerging evidence suggests that these approaches not only target tumors effectively but also stimulate antitumor immune responses. In this review, we begin by examining the distinctive features of hyperthermic treatments (radiofrequency and microwave ablation), cryoablation, and PEF-technologies. Subsequently, we discuss the mechanisms of cell death, stress responses, and release of danger signals triggered by these diverse ablation technologies. Finally, …

Nests With Higher Thermal Variation Produce Fewer Fledglings With Larger Bills Than Higher Temperature Nests, Salvador Barraza-Del Barco, William Kirckpatrick, Sarah Heissenberger, Sarah Durant

2025 Research Poster Competition

Warmer temperatures and increased temperature variability are predicted in the future due to climate change. Phenotypic outcomes of avian nestlings are heavily impacted by nest temperature. We examined metabolic rates and growth of Eastern Bluebird nestlings subjected to increased mean temperature and increased temperature variability within the nest during development.

Stress Affects Infectious Disease Outcomes In Canaries, Vansh Singhal, Erin Sauer, Salvador Barraza-Del Barco, Kamiah H. Turner, William H. Kirkpatrick, Weston Perrine, Sarah Heissenberger, Sarah E. Durant

2025 Research Poster Competition

Chronic stress is related to a decline in immune function in all living organisms and is known to increase the likelihood of developing or exacerbating chronic non-infectious diseases. However, the role of chronic stress in affecting outcomes of infection important to individual health and endpoints important for epidemic dynamics (e.g., likelihood of transmission) are not well understood. In this study we exposed canaries (Serinus canaria) to chronic stress or control conditions after which they were inoculated with Mycoplasma Gallisepticum, a bacterium that causes respiratory disease in birds.

Following the chronic stress protocol, the canaries were assessed every day for measures …

A Non-Toxic Analgesic Elicits Cell-Specific Genomic And Epigenomic Modulation By Targeting The Pag Brain Region, Hernan A. Bazan, Brian L. Giles, Surjyadipta Bhattacharjee, Scott Edwards, Nicolas G. Bazan

School of Medicine Faculty Publications

Acetaminophen (ApAP) is widely used for pain management, but overuse or overdose leads to hepatotoxicity, making it the leading cause of acute liver failure globally. There is an urgent need for safer pain medications, as other non-opioid analgesics like non-steroidal anti-inflammatory drugs (NSAIDs) are nephrotoxic. We have identified SRP-001 as a safer, non-hepatotoxic, novel analgesic that overcomes ApAP's limitations by avoiding NAPQI formation and preserving hepatic tight junctions. Using coupled RNA and ATAC sequencing, from the periaqueductal gray (PAG) midbrain region, we compared the genetic and epigenetic signatures of SRP-001 and ApAP treatments following complete Freund's adjuvant (CFA)-induced inflammatory pain …

Selective Lure For Bactrocera Dorsalis Based On Shared Palpal And Antennal Responses Across Three Economically Important Tephritid Species, Tibebe Dejene Biasazin, Raphael Njurai Miano, Xavier Cheseto, Shepard Ndlela, Samira A. Mohamed, Teun Dekker

All Peer-Reviewed Publications

The oriental fruit fly Bactrocera dorsalis is a highly destructive and invasive pest that threatens global horticulture, causing economic losses due to fruit damage and quarantine regulations. While attract-and-kill baits are widely used to suppress fly populations, these baits also impact many non-target species. To achieve ecological sustainability, our study aimed to develop a method that selectively targets female fruit flies. Using gas chromatography coupled to electro-antennal or palpal detection (GC-EAD/GC-EPD), we identified compounds that elicited responses in the maxillary palp and antenna of three different fruit flies including B. dorsalis, Ceratitis capitata, and Zeugodacus cucurbitae. As previous studies indicated …

Fire And Mammal Herbivory On Arthropods In The Protected Savannas: A Systematic Review, Ludzula Mukwevho, Mduduzi Ndlovu, Frank Chidawanyika

All Peer-Reviewed Publications

Protected areas in the savannas are key global reserves for biological diversity, including arthropods. Fire and mammal herbivory disrupts the diversity of biological organisms that alternately affects the functioning of the ecosystem. The study presents a global synthesis review of arthropod responses to varying intensities of fires and mammal herbivory in the protected savannas. We hypothesise that the intensity of predetermined fires and mammal herbivory has cascading impacts on abundance, species richness and diversity of terrestrial arthropods in the protected savannas. A minimum selection criteria was used to collate relevant literature from electronic databases of previous studies performed in the …

The Comparative Effects Of A Thermal Gradient On The Age And Growth Characteristics Of Largemouth Bass (Micropterus Nigricans), And Atlantic Cod (Gadus Morhua), Whitney Hall

Theses and Dissertations

Thermal gradients impact fishes differently, due to variations in ecological niches and physiological adaptations. I assessed the effects of temperature on Largemouth Bass (Micropterus nigricans) and Atlantic Cod (Gadus morhua) using data from peer-reviewed journals, state records, and fisheries agencies. For Largemouth Bass, I analyzed the relationships between air temperature (MAT_min°C, MAT24hr°C, and MAT_max°C), and growth parameters including maximum length and weight, growth rate (K), longevity, and total length-at-ages 3, 5, and 8 years (TLAge_3,5,8), using least squares regression. Significant correlations were found between all temperature and growth metrics. Positive correlations were found between …

Epilithic Algal Composition And The Functioning Of Anthropocene Coral Reefs, Sterling B. Tebbett, Michael J. Emslie, Michelle J. Jonker, Scott D. Ling, Morgan S. Pratchett, Alexandre C. Siqueira, Angus A. Thompson, Helen F. Yan, David R. Bellwood

Research outputs 2022 to 2026

Epilithic algae dominate cover on coral reefs globally, forming a critical ecological interface between the benthos and reef organisms. Yet, the drivers of epilithic algal composition, and how composition relates to the distribution of key taxa, remain unclear. We develop a novel metric, the Epilithic Algal Ratio, based on turf cover relative to total epilithic algae cover, and use this metric to assess cross-scale patterns. We reveal water quality and hydrodynamics as the key environmental drivers of the Epilithic Algal Ratio across the Great Barrier Reef (GBR), and reefs globally. On the GBR, the abundance of herbivorous fishes and juvenile …

A Comprehensive Uhplc-Ms/Ms And Extraction Method Reveals Flavonoid Profile And Concentration Are Diverse In Spinach (Spinacia Oleracea L), Michael P Dzakovich, Elaine A Le, Alvin L Tak, Shaji K Chacko

Children’s Nutrition Research Center Staff Publications

INTRODUCTION: Spinach produces an array of unique flavonoids not commonly found in other fruits and vegetables. These molecules likely serve as defense agents against biotic and abiotic stress and may have health beneficial properties for humans. Current methods to analyze spinach flavonoids are incomplete and only capture a portion of this uncharacterized pathway. A comprehensive analysis method is needed to determine how genetics, environmental conditions, and other factors influence spinach flavonoid biosynthesis.

METHODS: We developed and validated a high-throughput extraction and ultra high-performance liquid chromatography tandem mass spectrometry (UHPLC-MS/MS) method to separate and quantify 39 spinach flavonoid species in 11.5 …

New Genetic Tools To Define The Pathophysiology Of Inborn Errors Of Cobalamin Metabolism Impacting Mammalian Development, Tiffany Chern, Xuefei Tong, William G Bauer, David J Quispe-Parra, Xia Gao, Kamryn N Gerner-Mauro, Ross A Poché

Children’s Nutrition Research Center Staff Publications

The congenital, autosomal recessive disorder combined methylmalonic acidemia and homocystinuria - cblC type, is the most common inborn error of cobalamin (vitamin B12) metabolism. In its early onset form, cblC profoundly impacts fetal development of the central nervous system, hematopoietic system, and other tissues. Previously, mutations in the MMACHC gene, which encodes a protein required for the intracellular trafficking and enzymatic processing of free cobalamin into active coenzyme forms, were found to cause cblC. These coenzymes are required in two metabolic pathways which produce either succinyl-CoA in the mitochondria or methionine in the cytosol. However, due to a lack of …

More Than One Way To Be A Planktivore: The Vast Morphospace Of Plankton-Feeding Reef Fishes, Isabelle Ng, David R. Bellwood, Jan M. Strugnell, Sergio R. Floeter, Alexandre C. Siqueira

Research outputs 2022 to 2026

Planktivorous reef fishes are thought to possess unique morphological traits to feed on small, evasive prey. Despite the multitude of family-level studies addressing this hypothesis, results remain inconclusive. Our goal, therefore, was to determine whether specialised traits and patterns of morphological convergence are congruent across a comprehensive phylogeny of reef-associated fishes. We measured 15 morphological traits from 815 images of 299 species in 12 globally distributed families. Using phylogenetic comparative methods, we mapped the evolution of plankton-feeding across lineages; assessed the effect of planktivory on body shape; and tested for the presence of morphological convergence among planktivores. We demonstrate that …

Methyl Jasmonate Application Downregulates Drupelet Reversion And Enhances Phenolic Biosynthesis And Antioxidant Potential Of Blackberries, Hafiz Muhammad Shoaib Shah, Zora Singh, Mahmood Ul Hasan, Jashanpreet Kaur, Eben Afrifa-Yamoah, Andrew Woodward

Research outputs 2022 to 2026

Blackberry plants were sprayed with methyl jasmonate (MJ 0, 1, 2 or 3 mmol L−1), 2 weeks before tentative harvest maturity, to evaluate its influence on red drupelet reversion (RDR), antioxidant capacity and postharvest quality during cold storage up to 12 days. MJ significantly reduced RDR and weight loss while maintaining higher anthocyanins and flavonoids during cold storage for 12 days. MJ application upregulated phenolic metabolism by maintaining higher phenylalanine ammonia lyase activity, and showed higher total antioxidants, ascorbic acid, and glutathione content. MJ-treated blackberries displayed higher activities of superoxide dismutase, catalase, ascorbate peroxidase, monodehydroascorbate reductase, dehydroascorbate reductase and glutathione …

Cross-Habitat Patterns Of Sediment Transport And Release By Surgeonfishes, Sterling B. Tebbett, David R. Bellwood, James Gahan, Isabelle Ng, Alexandre C. Siqueira

Research outputs 2022 to 2026

Building a comprehensive understanding of geo-ecological functions is viewed as a critical step in the quantification of carbonate and sediment budgets on coral reefs. Although parrotfishes are known to play key roles in such functions, the roles of surgeonfishes are less well understood. This is despite surgeonfishes being some of the largest and most abundant, nominally herbivorous fishes on reefs, with the potential to play a major role in sediment dynamics. Here, we quantified the role of four focal surgeonfish species across two functional groups (sediment suckers and brushers) in cross-habitat sediment dynamics by combining data on behavioural observations, fish …

Contrasting Tropical Marine Herbivorous Fish Catches Between The Indo-Pacific And Western Atlantic, Lucas L. Lutzenkirchen, Sterling B. Tebbett, Helen F. Yan, David R. Bellwood

Research outputs 2022 to 2026

Ensuring food security in the Anthropocene presents a significant socio-ecological challenge, especially in rapidly changing coastal seascapes that sustain critical fisheries. Herbivorous fishes are essential for food and financial security through fisheries, however, their contributions to regional catches, and the factors influencing them, are not well understood. Analysing reported and reconstructed catch data across 69 Exclusive Economic Zones, we identify shallow-reef area and coastal population density as significant predictors of herbivorous fish catches. However, between-realm (i.e. Indo-Pacific vs. Western Atlantic) differences are marked, with rabbitfishes contributing disproportionately to herbivorous fishery catches. While rabbitfishes have the potential to support productive fisheries …