Marine Biology Commons^™

The Effects Of Refuge On Escape Responses Of Two Caribbean Goby Species, Russell P. Dauksis

Senior Honors Projects

The Effects of Refuge Abundance on Escape Responses of the Bridled Goby (Coryphopterus glaucofraenum)

Russell P. Dauksis

Major

Marine Biology

Advisor

Dr. Graham Forrester

Advisor Department

Natural Resources Science

Date

5-2012

Keywords

Escapology, marine ecology, functional morphology, animal behavior, predator-prey interactions, Bridled Goby, Coryphopterus glaucofraenum

Abstract

Interactions between predators and prey species are arguably the most pervasive and important events in ecology. Predators have strong effects on the distribution and abundance of prey in virtually all environments. In the long-term, it is therefore hardly surprising that selective mortality imposed by predators has shaped a wide array of prey behaviors …

A Springtime Source Of Toxic Pseudo-Nitzschia Cells On Razor Clam Beaches In The Pacific Northwest, Barbara Hickey, Vera Trainer, P. Kosro, Nicolaus Adams, Thomas Connolly, Nancy Kachel, Susan Geier

Faculty Publications

Concentrations of domoic acid (DA) above the regulatory limit in Washington coast razor clams are usually higher on northern beaches from summer to fall. Recent field studies have confirmed that the primary source of toxic Pseudo-nitzschia (PN) cells in those seasons is a semi-retentive topographically trapped seasonal eddy located offshore and north of the clamming beaches. Another semi-retentive coastal feature, Heceta Bank, that has been shown to support toxic PN cells in summer, is located south of Washington’s clamming beaches. In this paper we present evidence to demonstrate that Heceta Bank, although not a likely source of toxic cells to …

Distribution, Prevalence, And Genetic Analysis Of Panulirus Argus Virus 1 (Pav1) From The Caribbean Sea, Jessica Moss, Donald C. Behringer Jr., Jeffrey D. Shields, Antonio Baeza, Alfonso Aguilar-Perera, Phillippe G. Bush, Clement Dromer, Alejandro Herrera-Moreno, Lester Gittens, Thomas R. Matthews, Michael R. Mccord, Michelle T. Schärer, Lionel Reynal, Nathanial Truelove, Mark J. Butler Iv

Biological Sciences Faculty Publications

The pathogenic virus Panulirus argus virus 1 (PaV1) was first discovered in Caribbean spiny lobsters Panulirus argus from the Florida Keys (USA) in 1999 and has since been reported in Belize, Mexico, and Cuba; its distribution in the wider Caribbean is unknown. We collected tissue samples from adult spiny lobsters from 30 locations in 14 countries bordering the Caribbean Sea and used molecular diagnostics to assay for the presence of PaV1. PaV1 occurred primarily in the northern areas of the Caribbean, where its prevalence was highest. The virus was not found in lobsters from the southeastern Caribbean, and its prevalence …

Assessment Of Sea Lice Infestations On Wild Fishes Of Cobscook Bay, Alexander Jensen

Honors College

Sea lice are ectoparasitic copepods on fishes and can negatively impact aquaculture operations. Little work on sea lice, specifically Lepeophtheirus salmonis and Caligus elongatus, has occurred in the northwest Atlantic. This project characterized sea lice infestations on wild fishes in Cobscook Bay during 2012. Trawling, seine netting, and fyke netting occurred from March to November. Netting sites were selected to sample the bay’s three regions: Outer, Central, and Inner Bay. Visual examinations of fish were used to identify wild hosts and characterize sea lice life stage abundances, attachment locations, and infection prevalence and intensity. DNA sequencing was used to …

Springtime Contribution Of Dinitrogen Fixation To Primary Production Across The Mediterranean Sea, E. Rahav, B. Herut, A. Levi, Margaret Mulholland, I. Berman-Frank

OES Faculty Publications

Dinitrogen (N-2) fixation rates were measured during early spring across the different provinces of Mediterranean Sea surface waters. N-2 fixation rates, measured using N-15(2) enriched seawater, were lowest in the eastern basin and increased westward with a maximum at the Strait of Gibraltar (0.10 to 2.35 nmol NL-1 d(-1), respectively). These rates were 3-7 fold higher than N-2 fixation rates measured previously in the Mediterranean Sea during summertime and we estimated that methodological differences alone did not account for the seasonal changes we observed. Higher contribution of N-2 fixation to primary production (4-8 %) was measured in the western basin …

Genetic Structure In The Coral, Montastraea Cavernosa: Assessing Genetic Differentiation Among And Within Mesophotic Reefs, Daniel A. Brazeau, Michael P. Lesser, Marc Slattery

Pharmaceutical Sciences Faculty Publications

Mesophotic coral reefs (30–150 m) have recently received increased attention as a potential source of larvae (e.g., the refugia hypothesis) to repopulate a select subset of the shallow water (,30 m) coral fauna. To test the refugia hypothesis we used highly polymorphic Amplified Fragment Length Polymorphism (AFLP) markers as a means to assess small-scale genetic heterogeneity between geographic locations and across depth clines in the Caribbean coral, Montastraea cavernosa. Zooxanthellae-free DNA extracts of coral samples (N = 105) were analyzed from four depths, shallow (3–10 m), medium (15– 25 m), deep (30–50 m) and very deep (60–90 m) from Little …

Comparative Visual Function In Predatory Fishes From The Indian River Lagoon, D. Michelle Mccomb, Stephen M. Kajiura, Andrij Horodysky, Tamara M. Frank

Marine & Environmental Sciences Faculty Articles

Visual temporal resolution and spectral sensitivity of three coastal teleost species (common snook [Centropomus undecimalis], gray snapper [Lutjanus griseus], and pinfish [Lagodon rhomboides]) were investigated by electroretinogram. Temporal resolution was quantified under photopic and scotopic conditions using response waveform dynamics and maximum critical flicker fusion frequency (CFF_max). Photopic CFF_max was significantly higher than scotopic CFF_max in all species. The snapper had the shortest photoreceptor response latency time (26.7 ms) and the highest CFF_max (47 Hz), suggesting that its eyes are adapted for a brighter photic environment. In contrast, the …

Virginia Game Fish Tagging Program Annual Report 2012, Susanna Musick, Lewis Gillingham

Reports

Through 2012, the Virginia Game Fish Tagging Program has maintained a 18-year database of records for tagged and recaptured fish. The program is a cooperative project of the Virginia Saltwater Fishing Tournament (under the Virginia Marine Resources Commission-VMRC) and the Virginia Institute of Marine Science (VIMS) of the College of William and Mary (under the VIMS Marine Advisory Program).

De Novo Transcriptome Analysis Of The Marine Sponge Cinachyrella Spp: A Potential Model Organism For Oil And Dispersant Ecotoxicology, Emily Smith

HCNSO Student Theses and Dissertations

In order to study the potential effects of an oil spill on coral reef organisms, the marine sponge, Cinachyrella spp. was investigated. In this study, Cinachyrella spp. was placed in a closed aquaculture system and exposed to sub-lethal water-accommodated fractions (WAFs) of Macondo crude oil and chemically-enhanced water accommodated fractions (CE-WAFs) of the dispersant, Corexit 9500, over a 24-hour time course, in order to model the BP Deepwater Horizon oil spill and oil spill sponge response. Illumina RNA sequencing and gene expression analysis utilizing hierarchical clustering, principal component analysis, and KEGG bioinformatic database generated 34,147 unique transcripts with …

Aerobic Degradation Of Α-, Β-, Γ-Hexachlorocyclohexane By Narragansett Bay Bacterioplankton, Ian M. Rambo

Senior Honors Projects

Hexachlorocyclohexanes (HCHs) are a family of chlorinated organic compounds that were previously used as agricultural insecticides. HCHs are recognized as persistent organic pollutants due to their toxicity, recalcitrant properties, and tendency to bioaccumulate in food webs. Although HCH was first synthesized in 1825, its use was not widespread until the discovery of the insecticidal activity of the γ-HCH isomer in 1942. γ-HCH and its toxic waste isomers α-HCH and β-HCH were banned from production and use by the United Nations in 2009, yet these chemicals still present environmental problems due to their persistence in soils and surface waters. HCHs continue …

Investigation Of Early Development And Importance Of Sediment Choice In The Hatchery Production Of Razor Clams, Ensis Directus, Molly P. Flanagan

Honors College

Ensis directus, commonly known as the razor clam, is a bivalve species that lives in temperate sub-polar regions of the Atlantic Ocean. It is an infaunal species found in shallow, subtidal, sedimentary habitats. A recent increase in the market value for razor clams has resulted in heightened interest in the culture of this species. The experimental hatchery at the University of Maine’s Darling Marine Center began work in 2012 to develop improved hatchery and grow-out techniques for this species. For my thesis, razor clam embryos from both spontaneous and controlled spawns were observed via video and still imagery to document …

Diet And Prey Availability Of Sturgeons In The Penobscot River, Maine, Matthew Dzaugis

Honors College

Although vital to the protection and conservation of species listed under the U.S. Endangered Species Act, critical habitat of shortnose sturgeon and Atlantic sturgeon in the Penobscot River, Maine have not yet been described. Critical habitat includes food availability as well as the physical characteristics of foraging habitat. To characterize seasonal availability of benthic prey, a ponar grab was used to collect over 125 benthic samples between 21 May and 8 October 2012. Samples were stratified throughout the river and broadly categorized by sediment type. All organisms within samples were identified to the family level. To characterize diet, stomach contents …

Habitat Characterization, Habitat Use And Associated Growth Of Juvenile Spotted Seatrout (Cynoscion Nebulosus) In A Mississippi Bay System: Implications For Stock Enhancement Practices, Joseph Read Hendon

Dissertations

The spotted seatrout (Cynoscion nebulosus) is the most targeted recreational fishery species in Mississippi coastal waters. Consequently, the Seatrout Population Enhancement Cooperative stock enhancement program was initiated to investigate methods for supplementing this heavily exploited population. Given ecological data needs for both wild and hatchery-reared (HR) juveniles of the species, habitat mapping, directed sampling and a caging study were conducted. Submerged aquatic vegetation (SAV), oyster shell and non-vegetated substrates were mapped at water depths < 2 m in Point aux Chenes Bay, Mississippi, using a sidescan sonar, which provided more accurate estimations of habitat coverage, particularly for SAV, compared to point-based sampling. Applying habitat strata delineated from sidescan mapping, late-juvenile spotted seatrout [125 - 275 mm total length (TL)] were sampled in SAV, marsh-edge and non-vegetated habitats as part of a seasonal gill net survey conducted in 2011 and 2012. Spotted seatrout ranging from 138 to 485 mm TL were collected using a smallmesh gill net, and 65% of collected individuals fell within the targeted late-juvenile size range. Overall mean catch-per-unit-effort of C. nebulosus did not differ for abundance or biomass between years, but both metrics were significantly higher in SAV habitats. Employing cage enclosures that …

Evaluation Of Human Fecal Pollution In Mississippi Coastal And Creek Waters Using Library Independent Markers, Christopher John Flood

Dissertations

The objective of this study was to determine whether statistically valid correlations could be elucidated between standard indicator bacteria (enterococci and fecal coliforms) from coastal creek and marine samples and the presence of four library independent molecular markers that are human or sewage specific. Eight hundred and nineteen samples were collected between August 2007 and July 2010 to determine enterococcal and fecal coliform counts and the presence of genetic markers for sewage indicator organisms Methanobrevibacter smithii, human specific Bacteroides sp., Bacteroides thetaiotaomicron, and Fecalibacterium sp. During the course of this study environmental parameters were measured and statistically analyzed to determine …

Accessing Learning In The Adult Zebrafish With A Novel Associative Learning Task, David Joseph Jouandot Ii

Dissertations

The zebrafish (Danio rerio) is accepted in the developmental and genomic communities as a model organism. However, the capacity for the zebrafish as a behavioral model has yet to be fully acknowledged. The research presented provides evidence validating the novel task, aids in gaining a better understanding of the learning processes, and identifies individual differences. The novel associative learning task differs from any present well established behavioral model and lends itself to future development. The task provides the zebrafish community with a high output behavioral task which is readily replicated and allows one researcher to test between eight …

Tactile Behavior In A Group Of Captive Rough-Toothed Dolphins As A Function Of Opportunities To Play With Objects, Kelly Ann Caffery

Dissertations

Cetaceans live in complex physical and social environments that are frequently changing. In contrast, the captive environment for marine mammals is often lacking in stimulation. As a result, enrichment is often used to increase species-typical behaviors and enhance the well-being of the animals. The purpose of this study was to compare the effects of enrichment objects on the social behavior of a group of seven captive rough-toothed dolphins (Steno bredanensis). Observations of this species in the wild suggest it may have a particular affinity for tactile and object play behaviors. Therefore, these behavior categories were a primary focus …

Community Metrics And Trophic Dynamics In Tidal Creeks In An Anthropogenically Fragmented, Coastal Landscape, Michael Robert Lowe

Dissertations

Salt marsh landscapes are among the most anthropogenically altered ecosystems in the world. Urbanization (i.e., accumulation of impervious cover and man made structrues) of the coastal landscape can disrupt the delivery of numerous ecosystem services. Among the many services provided by salt marsh habitats, they serves as the primary habitats for distinct macroinfauna (i.e., benthic and epibenthic macrofauna) and nekton (i.e., fish and decapod crustaceans) assemblages. In this dissertation, I used a number of metrics to test the overarching hypothesis that coastal urbanization has negative consequences for salt marsh faunal assemblages. Chapter I uses a landscape ecology approach to show …

Phytoplankton Community Distribution And Light Absorption Properties In The Northern Gulf Of Mexico, Sumit Chakraborty

Dissertations

The theme of this dissertation was to understand the spatio-temporal dynamics of the phytoplankton community, its light absorption properties, and its relationship to underlying physicochemical processes. Understanding these phenomena will benefit efforts to predict pathways of carbon transformation in the ocean, to estimate primary productivity (PP) and to characterize distributions of phytoplankton communities using ocean color remote sensing.

This research entailed four different studies, which address different objectives. The first two studies dealt with phytoplankton community composition and its relationship to environmental variables. A chemotaxonomic approach was used, which was successful in revealing distinct phytoplankton assemblages in distinct water mass …

Advocacy For Marine Management: Contributions To A Policy Advocacy Initiative In The Maldives, Neal Collins

Capstone Collection

On June 5, 2009 a 42-­‐km2 area of coral reef situated in the Alif Dhaalu (South Ari) atoll of the Republic of Maldives was designated the South Ari Atoll Marine Protected Area (S.A. MPA) due to a globally significant whale shark aggregation site. The whale shark is notorious for its gargantuan size and docile nature, which has led to a burgeoning tourist industry that gives people the opportunity to swim with the gentle giants in tropical sites such as the Maldives. The S.A. MPA receives tens of thousands of visitors a year that engage in whale shark excursions, however, there …

Modulation Of Light-Enhancement To Symbiotic Algae By Light-Scattering In Corals And Evolutionary Trends In Bleaching, Luisa A. Marcelino, Mark W. Westneat, Valentina P. Stoyneva, Jillian Henss, Jeremy Rogers, Andrew J. Radosevich, Vladimir Turzhitsky, Margaret Siple, Andrew Fang, Timothy D. Swain, Jennifer Fung, Vadim Backman

Marine & Environmental Sciences Faculty Articles

Calcium carbonate skeletons of scleractinian corals amplify light availability to their algal symbionts by diffuse scattering, optimizing photosynthetic energy acquisition. However, the mechanism of scattering and its role in coral evolution and dissolution of algal symbioses during “bleaching” events are largely unknown. Here we show that differences in skeletal fractal architecture at nano/micro-lengthscales within 96 coral taxa result in an 8-fold variation in light-scattering and considerably alter the algal light environment. We identified a continuum of properties that fall between two extremes: (1) corals with low skeletal fractality that are efficient at transporting and redistributing light throughout the colony with …